Clone Sequence Records
BO13089.5prime Sequence
739 bp (631 high quality bases) assembled on 2006-05-08
> BO13089.5prime
GAAGTTATCAGTCGACATGGATATCTCCGCCTACCAGCACATGAACATCC
GGATGAGCACGCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGAC
AAGGTGCGTGCCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGT
GTCGCGGGACATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGA
ACGAGCAGAAGCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTG
GGTCTCGACACGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCA
GCTGCCACCGAAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCT
TCGGTGCACTGCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCC
CTGCTGGAGAAGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATT
GCATCCGGAGGGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACT
CCAACAACATGCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAA
CTCACCCCACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGA
GGACAACAAAGTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAA
ACAATTACCCCTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAG
CGGGTGAACTCCGCCAATCAGCCGGAGCAAGTGAACGAT
BO13089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13651-PA | 1260 | danr-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
CG11849-PA | 2037 | dan-RA | 116..192 | 156..232 | 210 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
danr-RA | 1832 | CG13651-RA | 161..884 | 16..739 | 3620 | 100 | Plus |
dan-RC | 3968 | CG11849-RC | 1078..1292 | 18..232 | 475 | 81.4 | Plus |
dan-RB | 3340 | CG11849-RB | 450..664 | 18..232 | 475 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25138232..25138955 | 16..739 | 3620 | 100 | Plus |
3R | 32079331 | 3R | 25189916..25190130 | 18..232 | 475 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:58:37 has no hits.
BO13089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:36 Download gff for
BO13089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:02 Download gff for
BO13089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13651-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:41 Download gff for
BO13089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 156..879 | 16..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:35 Download gff for
BO13089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 161..884 | 16..739 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:35 Download gff for
BO13089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25138232..25138955 | 16..739 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:41 Download gff for
BO13089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20963954..20964677 | 16..739 | 100 | | Plus |
BO13089.3prime Sequence
624 bp (515 high quality bases) assembled on 2006-05-08
> BO13089.3prime
ATGGTCTAGAAAGCTTGCCTGTTCGGCGTCGCTGGACCCGACGCTCTTGT
CGGGAGTGTGGGATCTGCTGGACGCCTTGGAGGCGCAGGAGCGCACGGAC
AGATCCTCCGGCTCGCTGTCGCAGTAGCTTTCGTTGGAGGCCTCACTGTG
CGCCAGTGGACTCAGTCGCTTTAGTAGCGCCTCGTTGAAAGGATATGTTT
CGAGATCCGGCTCCGATCCGCCGCTGGCCATTTGGTTGGGATTGTAGCTG
GGTCCACCTGGTCCTCCGCCGCCGGGCTGCATGGAGGCTGCGGCCGCAGC
GAAGGCCAGGAAGTTCAAACTGGCATTGAAGAGCTTGCACCAGTCGAGCA
GAGCCGCTCCCTGGTTATCGGTTCCAGTGGGCGGGGCGTTTGCCGGAGTC
ACTGGTGCTATCACAGGCGCTAGATCCGCAGGATTCGGGAAGGGTGCTGG
CAGTAGGGGCATTGTGGTGTCCGAGAACATGGGAGTCTTCGCCTGCTCCG
TGACAAGAGCTTGTGGTGCGGAACTGTTGGCCTCCAGGGCATTTGTTGTT
CTTATCGTTCACTTGCTCCGGCTGATTGGCGGAGTTCACCCGCTTGGCCG
GATCCTTGGCCCAGTTCTTAACAC
BO13089.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13651-PA | 1260 | danr-RA | 733..1257 | 543..19 | 2625 | 100 | Minus |
CG13651-PA | 1260 | danr-RA | 653..734 | 624..543 | 410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
danr-RA | 1832 | CG13651-RA | 814..1418 | 624..19 | 3005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25138885..25139489 | 624..19 | 2980 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:07:09 has no hits.
BO13089.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:35 Download gff for
BO13089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-PA | 653..1260 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:00 Download gff for
BO13089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13651-PA | 653..1260 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:57:49 Download gff for
BO13089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 809..1413 | 19..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:05 Download gff for
BO13089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 814..1418 | 19..624 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:05 Download gff for
BO13089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25138885..25139488 | 20..624 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:57:49 Download gff for
BO13089.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20964607..20965210 | 20..624 | 99 | -> | Minus |
BO13089.complete Sequence
1291 bp assembled on 2008-01-17
GenBank Submission: FJ632671
> BO13089.complete
GAAGTTATCAGTCGACATGGATATCTCCGCCTACCAGCACATGAACATCC
GGATGAGCACGCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGAC
AAGGTGCGTGCCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGT
GTCGCGGGACATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGA
ACGAGCAGAAGCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTG
GGTCTCGACACGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCA
GCTGCCACCGAAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCT
TCGGTGCACTGCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCC
CTGCTGGAGAAGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATT
GCATCCGGAGGGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACT
CCAACAACATGCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAA
CTCACCCCACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGA
GGACAACAAAGTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAA
ACAATTACCCCTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAG
CGGGTGAACTCCGCCAATCAGCCGGAGCAAGTGAACGATAAGAACAACAA
TGCCCTGGAGGCCAACAGTTCCGCACCACAAGCTCTTGTCACGGAGCAGG
CGAAGACTCCCATGTTCTCGGACACCACAATGCCCCTACTGCCAGCACCC
TTCCCGAATCCTGCGGATCTAGCGCCTGTGATAGCACCAGTGACTCCGGC
AAACGCCCCGCCCACTGGAACCGATAACCAGGGAGCGGCTCTGCTCGACT
GGTGCAAGCTCTTCAATGCCAGTTTGAACTTCCTGGCCTTCGCTGCGGCC
GCAGCCTCCATGCAGCCCGGCGGCGGAGGACCAGGTGGACCCAGCTACAA
TCCCAACCAAATGGCCAGCGGCGGATCGGAGCCGGATCTCGAAACATATC
CTTTCAACGAGGCGCTACTAAAGCGACTGAGTCCACTGGCGCACAGTGAG
GCCTCCAACGAAAGCTACTGCGACAGCGAGCCGGAGGATCTGTCCGTGCG
CTCCTGCGCCTCCAAGGCGTCCAGCAGATCCCACACTCCCGACAAGAGCG
TCGGGTCCAGCGACGCCGAACAGGCAAGCTTTCTAGACCAT
BO13089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
danr-RA | 1260 | CG13651-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
dan-RC | 2037 | CG11849-PC | 1..192 | 41..232 | 435 | 81.8 | Plus |
dan-RB | 2346 | CG11849-PB | 1..192 | 41..232 | 435 | 81.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
danr-RA | 1832 | CG13651-RA | 161..1418 | 16..1273 | 6290 | 100 | Plus |
dan-RC | 3968 | CG11849-RC | 1078..1292 | 18..232 | 475 | 81.4 | Plus |
dan-RB | 3340 | CG11849-RB | 450..664 | 18..232 | 475 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25138232..25139489 | 16..1273 | 6290 | 100 | Plus |
3R | 32079331 | 3R | 25189916..25190130 | 18..232 | 475 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:54 has no hits.
BO13089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:40 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 1..1260 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:27 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 157..1413 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:21 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 157..1413 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:41 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 156..1413 | 16..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:37 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
danr-RA | 162..1418 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:37 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25138233..25139489 | 17..1275 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:21 Download gff for
BO13089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20963955..20965211 | 17..1275 | 99 | | Plus |
BO13089.pep Sequence
Translation from 16 to 1291
> BO13089.pep
MDISAYQHMNIRMSTRGKRPLRNLTPNDKVRAIQRIHNGETKASVSRDIG
VPESTLRGWCKNEQKLRFMCRQLGPDHLGLDTPPEKRAKFELQLQLPPKF
VALPPNYEELGFGALPYSPADYPVQNESLLEKLSLVEFVKKNGGLHPEGA
LHPGQAGVMDYSNNMLHQLNLLALLNSKLTPQTADVLVDAQPKSEDNKVI
DSPAASEDYSKNNYPLLSVKNWAKDPAKRVNSANQPEQVNDKNNNALEAN
SSAPQALVTEQAKTPMFSDTTMPLLPAPFPNPADLAPVIAPVTPANAPPT
GTDNQGAALLDWCKLFNASLNFLAFAAAAASMQPGGGGPGGPSYNPNQMA
SGGSEPDLETYPFNEALLKRLSPLAHSEASNESYCDSEPEDLSVRSCASK
ASSRSHTPDKSVGSSDAEQASFLDH
BO13089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
danr-PA | 419 | CG13651-PA | 1..419 | 1..419 | 2198 | 100 | Plus |
dan-PC | 678 | CG11849-PC | 1..500 | 9..408 | 406 | 30.8 | Plus |
dan-PA | 678 | CG11849-PA | 1..500 | 9..408 | 406 | 30.8 | Plus |
dan-PB | 781 | CG11849-PB | 1..500 | 9..408 | 406 | 30.8 | Plus |
CG30401-PC | 275 | CG30401-PC | 8..59 | 16..66 | 156 | 61.5 | Plus |