Clone BO13089 Report

Search the DGRC for BO13089

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptdanr-RA
Protein status:BO13089.pep:
Sequenced Size:1291

Clone Sequence Records

BO13089.5prime Sequence

739 bp (631 high quality bases) assembled on 2006-05-08

> BO13089.5prime
GAAGTTATCAGTCGACATGGATATCTCCGCCTACCAGCACATGAACATCC
GGATGAGCACGCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGAC
AAGGTGCGTGCCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGT
GTCGCGGGACATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGA
ACGAGCAGAAGCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTG
GGTCTCGACACGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCA
GCTGCCACCGAAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCT
TCGGTGCACTGCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCC
CTGCTGGAGAAGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATT
GCATCCGGAGGGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACT
CCAACAACATGCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAA
CTCACCCCACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGA
GGACAACAAAGTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAA
ACAATTACCCCTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAG
CGGGTGAACTCCGCCAATCAGCCGGAGCAAGTGAACGAT

BO13089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13651-PA 1260 danr-RA 1..723 17..739 3615 100 Plus
CG11849-PA 2037 dan-RA 116..192 156..232 210 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
danr-RA 1832 CG13651-RA 161..884 16..739 3620 100 Plus
dan-RC 3968 CG11849-RC 1078..1292 18..232 475 81.4 Plus
dan-RB 3340 CG11849-RB 450..664 18..232 475 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25138232..25138955 16..739 3620 100 Plus
3R 32079331 3R 25189916..25190130 18..232 475 81.4 Plus
Blast to na_te.dros performed on 2015-02-11 09:58:37 has no hits.

BO13089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:36 Download gff for BO13089.5prime
Subject Subject Range Query Range Percent Splice Strand
danr-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:02 Download gff for BO13089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13651-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:41 Download gff for BO13089.5prime
Subject Subject Range Query Range Percent Splice Strand
danr-RA 156..879 16..739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:35 Download gff for BO13089.5prime
Subject Subject Range Query Range Percent Splice Strand
danr-RA 161..884 16..739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:35 Download gff for BO13089.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25138232..25138955 16..739 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:41 Download gff for BO13089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20963954..20964677 16..739 100   Plus

BO13089.3prime Sequence

624 bp (515 high quality bases) assembled on 2006-05-08

> BO13089.3prime
ATGGTCTAGAAAGCTTGCCTGTTCGGCGTCGCTGGACCCGACGCTCTTGT
CGGGAGTGTGGGATCTGCTGGACGCCTTGGAGGCGCAGGAGCGCACGGAC
AGATCCTCCGGCTCGCTGTCGCAGTAGCTTTCGTTGGAGGCCTCACTGTG
CGCCAGTGGACTCAGTCGCTTTAGTAGCGCCTCGTTGAAAGGATATGTTT
CGAGATCCGGCTCCGATCCGCCGCTGGCCATTTGGTTGGGATTGTAGCTG
GGTCCACCTGGTCCTCCGCCGCCGGGCTGCATGGAGGCTGCGGCCGCAGC
GAAGGCCAGGAAGTTCAAACTGGCATTGAAGAGCTTGCACCAGTCGAGCA
GAGCCGCTCCCTGGTTATCGGTTCCAGTGGGCGGGGCGTTTGCCGGAGTC
ACTGGTGCTATCACAGGCGCTAGATCCGCAGGATTCGGGAAGGGTGCTGG
CAGTAGGGGCATTGTGGTGTCCGAGAACATGGGAGTCTTCGCCTGCTCCG
TGACAAGAGCTTGTGGTGCGGAACTGTTGGCCTCCAGGGCATTTGTTGTT
CTTATCGTTCACTTGCTCCGGCTGATTGGCGGAGTTCACCCGCTTGGCCG
GATCCTTGGCCCAGTTCTTAACAC

BO13089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13651-PA 1260 danr-RA 733..1257 543..19 2625 100 Minus
CG13651-PA 1260 danr-RA 653..734 624..543 410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
danr-RA 1832 CG13651-RA 814..1418 624..19 3005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25138885..25139489 624..19 2980 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 16:07:09 has no hits.

BO13089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:35 Download gff for BO13089.3prime
Subject Subject Range Query Range Percent Splice Strand
danr-PA 653..1260 18..624 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:00 Download gff for BO13089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13651-PA 653..1260 18..624 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:57:49 Download gff for BO13089.3prime
Subject Subject Range Query Range Percent Splice Strand
danr-RA 809..1413 19..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:05 Download gff for BO13089.3prime
Subject Subject Range Query Range Percent Splice Strand
danr-RA 814..1418 19..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:05 Download gff for BO13089.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25138885..25139488 20..624 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:57:49 Download gff for BO13089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20964607..20965210 20..624 99 -> Minus

BO13089.complete Sequence

1291 bp assembled on 2008-01-17

GenBank Submission: FJ632671

> BO13089.complete
GAAGTTATCAGTCGACATGGATATCTCCGCCTACCAGCACATGAACATCC
GGATGAGCACGCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGAC
AAGGTGCGTGCCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGT
GTCGCGGGACATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGA
ACGAGCAGAAGCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTG
GGTCTCGACACGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCA
GCTGCCACCGAAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCT
TCGGTGCACTGCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCC
CTGCTGGAGAAGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATT
GCATCCGGAGGGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACT
CCAACAACATGCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAA
CTCACCCCACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGA
GGACAACAAAGTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAA
ACAATTACCCCTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAG
CGGGTGAACTCCGCCAATCAGCCGGAGCAAGTGAACGATAAGAACAACAA
TGCCCTGGAGGCCAACAGTTCCGCACCACAAGCTCTTGTCACGGAGCAGG
CGAAGACTCCCATGTTCTCGGACACCACAATGCCCCTACTGCCAGCACCC
TTCCCGAATCCTGCGGATCTAGCGCCTGTGATAGCACCAGTGACTCCGGC
AAACGCCCCGCCCACTGGAACCGATAACCAGGGAGCGGCTCTGCTCGACT
GGTGCAAGCTCTTCAATGCCAGTTTGAACTTCCTGGCCTTCGCTGCGGCC
GCAGCCTCCATGCAGCCCGGCGGCGGAGGACCAGGTGGACCCAGCTACAA
TCCCAACCAAATGGCCAGCGGCGGATCGGAGCCGGATCTCGAAACATATC
CTTTCAACGAGGCGCTACTAAAGCGACTGAGTCCACTGGCGCACAGTGAG
GCCTCCAACGAAAGCTACTGCGACAGCGAGCCGGAGGATCTGTCCGTGCG
CTCCTGCGCCTCCAAGGCGTCCAGCAGATCCCACACTCCCGACAAGAGCG
TCGGGTCCAGCGACGCCGAACAGGCAAGCTTTCTAGACCAT

BO13089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
danr-RA 1260 CG13651-PA 1..1257 17..1273 6285 100 Plus
dan-RC 2037 CG11849-PC 1..192 41..232 435 81.8 Plus
dan-RB 2346 CG11849-PB 1..192 41..232 435 81.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
danr-RA 1832 CG13651-RA 161..1418 16..1273 6290 100 Plus
dan-RC 3968 CG11849-RC 1078..1292 18..232 475 81.4 Plus
dan-RB 3340 CG11849-RB 450..664 18..232 475 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25138232..25139489 16..1273 6290 100 Plus
3R 32079331 3R 25189916..25190130 18..232 475 81.4 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:54 has no hits.

BO13089.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:40 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 1..1260 17..1274 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:27 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 157..1413 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:21 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 157..1413 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:41 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 156..1413 16..1273 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:37 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
danr-RA 162..1418 17..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:37 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25138233..25139489 17..1275 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:21 Download gff for BO13089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20963955..20965211 17..1275 99   Plus

BO13089.pep Sequence

Translation from 16 to 1291

> BO13089.pep
MDISAYQHMNIRMSTRGKRPLRNLTPNDKVRAIQRIHNGETKASVSRDIG
VPESTLRGWCKNEQKLRFMCRQLGPDHLGLDTPPEKRAKFELQLQLPPKF
VALPPNYEELGFGALPYSPADYPVQNESLLEKLSLVEFVKKNGGLHPEGA
LHPGQAGVMDYSNNMLHQLNLLALLNSKLTPQTADVLVDAQPKSEDNKVI
DSPAASEDYSKNNYPLLSVKNWAKDPAKRVNSANQPEQVNDKNNNALEAN
SSAPQALVTEQAKTPMFSDTTMPLLPAPFPNPADLAPVIAPVTPANAPPT
GTDNQGAALLDWCKLFNASLNFLAFAAAAASMQPGGGGPGGPSYNPNQMA
SGGSEPDLETYPFNEALLKRLSPLAHSEASNESYCDSEPEDLSVRSCASK
ASSRSHTPDKSVGSSDAEQASFLDH

BO13089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
danr-PA 419 CG13651-PA 1..419 1..419 2198 100 Plus
dan-PC 678 CG11849-PC 1..500 9..408 406 30.8 Plus
dan-PA 678 CG11849-PA 1..500 9..408 406 30.8 Plus
dan-PB 781 CG11849-PB 1..500 9..408 406 30.8 Plus
CG30401-PC 275 CG30401-PC 8..59 16..66 156 61.5 Plus