Clone Sequence Records
BO13091.3prime Sequence
700 bp (695 high quality bases) assembled on 2006-05-08
> BO13091.3prime
ATGGTCTAGAAAGCTTGCGTAGGGCTTCGAGTCCTTGGGCTTCTTCAGCT
GCACCTTGAGACGCTTGGTGCCCACCTGGAAGCCGTTCATCGCCTTTATG
GCCACCTGGGCCGAGTCCGGATTGTCGAAGGAGACAAACCCGAAGCACTT
CGACAGGCTCGTCTGTTTGTCGATGAACACCTTGGCCGAGATCACATTGC
CGAAGGGCAGGAACGTGGAGGCCAGATCCGTATCGGTGAACTCCTGCGGC
AGATGGTAGATGAAAAGGTTGCAGCCCTCGGGTCCTTCAATCTGCTTTCC
CGCTGCGGCGGCGGCTGCGGCGCTGAGGGCAACGCTGGCCAGCGGCGAAG
TGGACAATGCACTGGCGCTCCCGAATTGCGGCAGACCGGCGGCTGTTGAC
ATATATGCCGATGCCATTGGATTCGGATCGGACCAGAGCAGCGCAGCCGT
GTTGGTCAGTTGGGCGCTTCCAGGCGATGTGGCAGCGGCGGCTGCCGCGG
CGGCATTCGAGAGACTCGGCTGCGTCATGGCCGCAATGGCCGCTAAGATT
CTGGACGGTCATCGGGGTCAAAAGTCCTGCGGCCGCCACAACGCTGGTGT
CCGTCGCCGAGCTGCTCTGCTGGGCTCCCAGTCCTGTGAGGGCTTGCAAC
AACTGGTGCTGCAGTCCCACCGCCTGCAGCTGCTGCCAGCAGTTGATTGG
BO13091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31762-PB | 2433 | aret-RB | 1904..2430 | 545..19 | 2635 | 100 | Minus |
CG31762-PA | 1815 | aret-RA | 1286..1812 | 545..19 | 2635 | 100 | Minus |
CG31762-PD | 1086 | aret-RD | 557..1083 | 545..19 | 2635 | 100 | Minus |
CG31762-PC | 1851 | aret-RC | 1433..1848 | 434..19 | 2080 | 100 | Minus |
CG31762-PC | 1851 | aret-RC | 1146..1286 | 686..546 | 680 | 99.2 | Minus |
CG31762-PB | 2433 | aret-RB | 1764..1904 | 686..546 | 680 | 99.2 | Minus |
CG31762-PA | 1815 | aret-RA | 1146..1286 | 686..546 | 680 | 99.2 | Minus |
CG31762-PD | 1086 | aret-RD | 417..557 | 686..546 | 680 | 99.2 | Minus |
CG31762-PC | 1851 | aret-RC | 1286..1397 | 545..434 | 560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aret-RK | 3510 | CG31762-RK | 1467..2146 | 700..19 | 3330 | 99.4 | Minus |
aret-RJ | 2431 | CG31762-RJ | 1496..2175 | 700..19 | 3330 | 99.4 | Minus |
aret-RI | 3019 | CG31762-RI | 1191..1870 | 700..19 | 3330 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12310680..12310947 | 286..19 | 1340 | 100 | Minus |
2L | 23513712 | 2L | 12299186..12299395 | 644..434 | 990 | 99.1 | Minus |
2L | 23513712 | 2L | 12304446..12304596 | 434..284 | 755 | 100 | Minus |
2L | 23513712 | 2L | 12396291..12396524 | 286..53 | 450 | 79.5 | Minus |
2L | 23513712 | 2L | 12299055..12299111 | 700..643 | 225 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:04:14 has no hits.
BO13091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:39 Download gff for
BO13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-PA | 1133..1815 | 18..700 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:06 Download gff for
BO13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31762-PA | 1133..1815 | 18..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:32 Download gff for
BO13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RI | 1191..1870 | 19..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:08 Download gff for
BO13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RI | 1191..1870 | 19..700 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:08 Download gff for
BO13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12299055..12299111 | 643..700 | 96 | -> | Minus |
2L | 12299188..12299394 | 435..642 | 99 | -> | Minus |
2L | 12304446..12304595 | 285..434 | 100 | -> | Minus |
2L | 12310682..12310947 | 19..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:32 Download gff for
BO13091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12299055..12299111 | 643..700 | 96 | -> | Minus |
arm_2L | 12299188..12299394 | 435..642 | 99 | -> | Minus |
arm_2L | 12304446..12304595 | 285..434 | 100 | -> | Minus |
arm_2L | 12310682..12310947 | 19..284 | 100 | | Minus |
BO13091.5prime Sequence
663 bp (646 high quality bases) assembled on 2006-05-08
> BO13091.5prime
GAAGTTATCAGTCGACATGCTAAACAAGAAGCTGAACGAGAACGACGTTC
GCAAGCTATTTGAAGTCCACGGAGCCATCGAGGAGTGCACCGTCCTTCGG
GACCAAAACGGACAGAGCAAGGGTTGTGCCTTCGTCACATTCGCCACCAA
GCACGCTGCCATTTCGGCCATTAAAGTGACCCTGAGCCAGAACAAGATCA
TGGAGGGCTGCACATCGCCGCTGGTCGTCAAGTTCGCCGATACGCAAAAA
GAGAAGGAGCAGAAGAAGATTCAGCAAATTCAGGCCAATCTCTGGAACCT
GGCCAGCAACATCAACATACCTCTGGGCCAAACGGCCACCAGCGTGACCA
CGCCCATCCTGCCCAATCCGCCGCAGCAGCCTTCGCCGGTTCTCGGCGCA
GATGCCATTACCCCGGCCTCCATTCAACTGCTGCAGCAGCTGCAGGCGGT
GGGACTGCAGCACCAGTTGTTGCAAGCCCTCACAGGACTGGGAGCCCAGC
AGAGCAGCTCGGCGACGGACACCAGCGCTGTGGCGGCCGCAGGACTTTTG
ACCCCGATGACCGTCCAGAATCTAGCGGCCATTGCGGCCATGACGCAGCC
GAGTCTCTCGAATGCCGCCGCGGCAGCCGCCGCTGCCACATCGCCTGGAA
GCGCCCAACTGAC
BO13091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31762-PB | 2433 | aret-RB | 1348..1994 | 17..663 | 3235 | 100 | Plus |
CG31762-PA | 1815 | aret-RA | 730..1376 | 17..663 | 3235 | 100 | Plus |
CG31762-PC | 1851 | aret-RC | 730..1376 | 17..663 | 3235 | 100 | Plus |
CG31762-PD | 1086 | aret-RD | 1..647 | 17..663 | 3235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aret-RK | 3510 | CG31762-RK | 1064..1710 | 17..663 | 3235 | 100 | Plus |
aret-RJ | 2431 | CG31762-RJ | 1093..1739 | 17..663 | 3235 | 100 | Plus |
aret-RI | 3019 | CG31762-RI | 788..1434 | 17..663 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12298813..12299111 | 178..476 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 12299186..12299374 | 475..663 | 945 | 100 | Plus |
2L | 23513712 | 2L | 12298588..12298749 | 17..178 | 810 | 100 | Plus |
2L | 23513712 | 2L | 12385632..12385718 | 67..153 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:00:59 has no hits.
BO13091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:40 Download gff for
BO13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-PB | 1342..1994 | 11..663 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:08 Download gff for
BO13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31762-PD | 1..647 | 17..663 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:58 Download gff for
BO13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RI | 782..1434 | 11..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:53 Download gff for
BO13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RI | 782..1434 | 11..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:53 Download gff for
BO13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12298582..12298749 | 11..178 | 98 | -> | Plus |
2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
2L | 12299188..12299374 | 477..663 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:58 Download gff for
BO13091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12298582..12298749 | 11..178 | 98 | -> | Plus |
arm_2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
arm_2L | 12299188..12299374 | 477..663 | 100 | | Plus |
BO13091.complete Sequence
1117 bp assembled on 2006-10-11
GenBank Submission: FJ632672
> BO13091.complete
GAAGTTATCAGTCGACATGCTAAACAAGAAGCTGAACGAGAACGACGTTC
GCAAGCTATTTGAAGTCCACGGAGCCATCGAGGAGTGCACCGTCCTTCGG
GACCAAAACGGACAGAGCAAGGGTTGTGCCTTCGTCACATTCGCCACCAA
GCACGCTGCCATTTCGGCCATTAAAGTGACCCTGAGCCAGAACAAGATCA
TGGAGGGCTGCACATCGCCGCTGGTCGTCAAGTTCGCCGATACGCAAAAA
GAGAAGGAGCAGAAGAAGATTCAGCAAATTCAGGCCAATCTCTGGAACCT
GGCCAGCAACATCAACATACCTCTGGGCCAAACGGCCACCAGCGTGACCA
CGCCCATCCTGCCCAATCCGCCGCAGCAGCCTTCGCCGGTTCTCGGCGCA
GATGCCATTACCCCGGCCTCCATTCAACTGCTGCAGCAGCTGCAGGCGGT
GGGACTGCAGCACCAGTTGTTGCAAGCCCTCACAGGACTGGGAGCCCAGC
AGAGCAGCTCGGCGACGGACACCAGCGCTGTGGCGGCCGCAGGACTTTTG
ACCCCGATGACCGTCCAGAATCTAGCGGCCATTGCGGCCATGACGCAGCC
GAGTCTCTCGAATGCCGCCGCGGCAGCCGCCGCTGCCACATCGCCTGGAA
GCGCCCAACTGACCAACACGGCTGCGCTGCTCTGGTCCGATCCGAATCCA
ATGGCATCGGCATATATGTCAACAGCCGCCGGTCTGCCGCAATTCGGGAG
CGCCAGTGCATTGTCCACTTCGCCGCTGGCCAGCGTTGCCCTCAGCGCCG
CAGCCGCCGCCGCAGCGGGAAAGCAGATTGAAGGACCCGAGGGCTGCAAC
CTTTTCATCTACCATCTGCCGCAGGAGTTCACCGATACGGATCTGGCCTC
CACGTTCCTGCCCTTCGGCAATGTGATCTCGGCCAAGGTGTTCATCGACA
AACAGACGAGCCTGTCGAAGTGCTTCGGGTTTGTCTCCTTCGACAATCCG
GACTCGGCCCAGGTGGCCATAAAGGCGATGAACGGCTTCCAGGTGGGCAC
CAAGCGTCTCAAGGTGCAGCTGAAGAAGCCCAAGGACTCGAAGCCCTACG
CAAGCTTTCTAGACCAT
BO13091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aret-RK | 1722 | CG31762-PK | 637..1719 | 17..1099 | 5415 | 100 | Plus |
aret-RJ | 1722 | CG31762-PJ | 637..1719 | 17..1099 | 5415 | 100 | Plus |
aret-RI | 1722 | CG31762-PI | 637..1719 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aret-RK | 3510 | CG31762-RK | 1064..2146 | 17..1099 | 5415 | 100 | Plus |
aret-RJ | 2431 | CG31762-RJ | 1093..2175 | 17..1099 | 5415 | 100 | Plus |
aret-RI | 3019 | CG31762-RI | 788..1870 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12298813..12299111 | 178..476 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 12310680..12310947 | 832..1099 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 12299186..12299395 | 475..684 | 1050 | 100 | Plus |
2L | 23513712 | 2L | 12298588..12298749 | 17..178 | 810 | 100 | Plus |
2L | 23513712 | 2L | 12304446..12304596 | 684..834 | 755 | 100 | Plus |
2L | 23513712 | 2L | 12396291..12396524 | 832..1065 | 450 | 79.5 | Plus |
2L | 23513712 | 2L | 12385632..12385718 | 67..153 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:59:54 has no hits.
BO13091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:58 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RA | 724..1815 | 11..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:29 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RA | 1059..2141 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:21 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RI | 788..1870 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:58 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RA | 1053..2141 | 11..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:43 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aret-RI | 788..1870 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:43 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12298588..12298749 | 17..178 | 100 | -> | Plus |
2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
2L | 12299188..12299394 | 477..683 | 100 | -> | Plus |
2L | 12304446..12304595 | 684..833 | 100 | -> | Plus |
2L | 12310682..12310947 | 834..1101 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:21 Download gff for
BO13091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12304446..12304595 | 684..833 | 100 | -> | Plus |
arm_2L | 12298588..12298749 | 17..178 | 100 | -> | Plus |
arm_2L | 12298814..12299111 | 179..476 | 100 | -> | Plus |
arm_2L | 12299188..12299394 | 477..683 | 100 | -> | Plus |
arm_2L | 12310682..12310947 | 834..1101 | 99 | | Plus |
BO13091.pep Sequence
Translation from 16 to 1117
> BO13091.pep
MLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAIS
AIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKKIQQIQANLWNLASNIN
IPLGQTATSVTTPILPNPPQQPSPVLGADAITPASIQLLQQLQAVGLQHQ
LLQALTGLGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNA
AAAAAAATSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALS
TSPLASVALSAAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPF
GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV
QLKKPKDSKPYASFLDH
BO13091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aret-PD | 361 | CG31762-PD | 1..361 | 1..361 | 1802 | 100 | Plus |
aret-PK | 573 | CG31762-PK | 213..573 | 1..361 | 1802 | 100 | Plus |
aret-PJ | 573 | CG31762-PJ | 213..573 | 1..361 | 1802 | 100 | Plus |
aret-PI | 573 | CG31762-PI | 213..573 | 1..361 | 1802 | 100 | Plus |
aret-PH | 573 | CG31762-PH | 213..573 | 1..361 | 1802 | 100 | Plus |