Clone BO13094 Report

Search the DGRC for BO13094

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG4753-RA
Protein status:BO13094.pep: validated full length
Sequenced Size:1174

Clone Sequence Records

BO13094.3prime Sequence

677 bp (617 high quality bases) assembled on 2006-05-08

> BO13094.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGGCAGCAGCTGCTCCATACGCAGAGG
CTTTGCTGATCTTCGAAGCATTCACAGCGTATTCCATGAGGCTATAGAAT
CCTCCCAAAATGGAAAGAACCGTGATGAAGCCAAACCAGTTGCCGGCAAC
CAGCGAGGTGACCAAGTAGTGCAGAATGCACAGGACGGCAAAGGTGGCCC
AGCCCAAGAAGTTGAGGAGCGTGCTCAGGCGCGGCTTGTAGATTTTCTCG
GGCACCTCCTTGACTCCGGAATTCTTAAAGAAGCTGCCGGTCTCGTGGAA
GCTGTCGATGATCTTGTCCTTTTCCGCAAAGAAGTCCTGCATCCAGGCGG
CGGCCTCCTTCTCGTCATCGGGAACCACGTCCAGTGGCACTCGGCGAATG
TACATGTACGGTTCCACGGGCTCTCCGTTCAACTGGGACAGCATGGTGGG
CTTTGGCTCGGCATTCTTCTTGAAGGCCAGATTGATGTCGTAGATGGCAG
GACAGATGCCACGCATGGTGGGCAGACTGGTCGTGAATCCCTTAGTGCGC
GGAATCAGATGGTGCTTGAGGAGGGGAAGACCTCGCTCCTCGGCGAACTT
GACTGACAGCTCGTGTTTGGCGGGTGTGAAACGGGTGCCCTCCGCGTTCA
GCAGTAGCCACACGGGATCCGGATAGG

BO13094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PB 1143 CG4753-RB 482..1140 677..19 3295 100 Minus
CG4753-PA 1143 CG4753-RA 482..1140 677..19 3295 100 Minus
CG4729-PD 432 CG4729-RD 124..172 321..273 145 91.8 Minus
CG4729-PA 1161 CG4729-RA 853..901 321..273 145 91.8 Minus
CG4729-PC 1161 CG4729-RC 853..901 321..273 145 91.8 Minus
CG4729-PB 1161 CG4729-RB 853..901 321..273 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1575 CG4753-RC 761..1419 677..19 3295 100 Minus
CG4753-RA 1355 CG4753-RA 541..1199 677..19 3295 100 Minus
CG4753-RB 1570 CG4753-RB 756..1414 677..19 3295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379270..16379629 99..458 1800 100 Plus
3L 28110227 3L 16379700..16379920 457..677 1105 100 Plus
3L 28110227 3L 16379130..16379209 19..98 400 100 Plus
3L 28110227 3L 16382537..16382670 254..387 325 82.8 Plus
3L 28110227 3L 16383353..16383551 479..677 290 76.4 Plus
Blast to na_te.dros performed on 2015-02-10 17:28:58 has no hits.

BO13094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:45 Download gff for BO13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-PB 482..1143 18..677 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:13 Download gff for BO13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-PA 482..1143 18..677 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:23:31 Download gff for BO13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 756..1421 10..677 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:59 Download gff for BO13094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 756..1421 10..677 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:59 Download gff for BO13094.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16379123..16379209 10..98 95 <- Plus
3L 16379270..16379627 99..456 100 <- Plus
3L 16379700..16379920 457..677 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:23:31 Download gff for BO13094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16372223..16372309 10..98 95 <- Plus
arm_3L 16372370..16372727 99..456 100 <- Plus
arm_3L 16372800..16373020 457..677 100   Plus

BO13094.5prime Sequence

718 bp (683 high quality bases) assembled on 2006-05-08

> BO13094.5prime
GAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGA
TCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTC
CTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCT
GGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGG
AATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAG
CAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTA
CGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATC
TGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTC
CTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTT
CGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTCTTCTCCT
ATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCGTTTCACA
CCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCC
CCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCACGACCAGTC
TGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCAATCTGGCC
TTCAAGAAGAATGCCGAG

BO13094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PB 1143 CG4753-RB 1..702 17..718 3510 100 Plus
CG4753-PA 1143 CG4753-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1575 CG4753-RC 280..981 17..718 3510 100 Plus
CG4753-RA 1355 CG4753-RA 60..761 17..718 3510 100 Plus
CG4753-RB 1570 CG4753-RB 275..976 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379700..16380235 718..183 2680 100 Minus
3L 28110227 3L 16380471..16380636 182..17 830 100 Minus
3L 28110227 3L 16383353..16383787 696..262 540 74.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:06:47 has no hits.

BO13094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:46 Download gff for BO13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-PB 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:14 Download gff for BO13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:41 Download gff for BO13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 271..976 9..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:17 Download gff for BO13094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 271..976 9..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:17 Download gff for BO13094.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16380471..16380636 17..182 100   Minus
3L 16379700..16380235 183..718 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:41 Download gff for BO13094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16372800..16373335 183..718 100 <- Minus
arm_3L 16373571..16373736 17..182 100   Minus

BO13094.complete Sequence

1174 bp assembled on 2006-10-11

GenBank Submission: FJ632674

> BO13094.complete
GAAGTTATCAGTCGACATGTCGCATCTCCGGGGTTTGGGGCGACTGCTGA
TCGCCGTGACCTTCTTCACATGCGGATTCTTCGTCAACATTGGCCAGCTC
CTGCTGATTCTCCTCGTGAGGCCCTTCGATAAGAAGCTATCCCGCAGTCT
GGCCTACTACCTGCACTACTCCTTCTATTGCATCCTTGTCTGTGTGGCGG
AATGGTATGCGGGCAGCAAGCTGAGGGTGTACATCGATCCCCAGGACGAG
CAGAAGTTCTTCGGCAAGGAGCATGGACTGCTCCTGATGAACCACACGTA
CGAGATCGACTGGCTGACCGCCTGGATGATCACCGACAAGCTGGGCAATC
TGGGAGGCACCAAGGCGTATGCCAAGAAGATGCTGCGCTATGTTCCGGTC
CTGGGATGGGTCTGGTGGATGGCCGAGTTCATCTTCCTTGACCGCAACTT
CGAGAAGGACAAGGTGGTGATCAAGACGCAGCTGAAGGAGGTCTTCTCCT
ATCCGGATCCCGTGTGGCTACTGCTGAACGCGGAGGGCACCCGTTTCACA
CCCGCCAAACACGAGCTGTCAGTCAAGTTCGCCGAGGAGCGAGGTCTTCC
CCTCCTCAAGCACCATCTGATTCCGCGCACTAAGGGATTCACGACCAGTC
TGCCCACCATGCGTGGCATCTGTCCTGCCATCTACGACATCAATCTGGCC
TTCAAGAAGAATGCCGAGCCAAAGCCCACCATGCTGTCCCAGTTGAACGG
AGAGCCCGTGGAACCGTACATGTACATTCGCCGAGTGCCACTGGACGTGG
TTCCCGATGACGAGAAGGAGGCCGCCGCCTGGATGCAGGACTTCTTTGCG
GAAAAGGACAAGATCATCGACAGCTTCCACGAGACCGGCAGCTTCTTTAA
GAATTCCGGAGTCAAGGAGGTGCCCGAGAAAATCTACAAGCCGCGCCTGA
GCACGCTCCTCAACTTCTTGGGCTGGGCCACCTTTGCCGTCCTGTGCATT
CTGCACTACTTGGTCACCTCGCTGGTTGCCGGCAACTGGTTTGGCTTCAT
CACGGTTCTTTCCATTTTGGGAGGATTCTATAGCCTCATGGAATACGCTG
TGAATGCTTCGAAGATCAGCAAAGCCTCTGCGTATGGAGCAGCTGCTGCC
AAGAAAGCAAGCTTTCTAGACCAT

BO13094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1143 CG4753-PC 1..1140 17..1156 5700 100 Plus
CG4753-RA 1143 CG4753-PA 1..1140 17..1156 5700 100 Plus
CG4753-RB 1143 CG4753-PB 1..1140 17..1156 5700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-RC 1575 CG4753-RC 280..1419 17..1156 5700 100 Plus
CG4753-RA 1355 CG4753-RA 60..1199 17..1156 5700 100 Plus
CG4753-RB 1570 CG4753-RB 275..1414 17..1156 5700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16379700..16380235 718..183 2680 100 Minus
3L 28110227 3L 16379270..16379629 1076..717 1800 100 Minus
3L 28110227 3L 16380471..16380636 182..17 830 100 Minus
3L 28110227 3L 16383353..16383787 696..262 540 74.9 Minus
3L 28110227 3L 16379130..16379209 1156..1077 400 100 Minus
3L 28110227 3L 16382537..16382670 921..788 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-27 15:21:08 has no hits.

BO13094.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:00 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 1..1143 17..1157 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:03 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 55..1201 17..1165 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:54 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 275..1414 17..1158 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:00 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RA 55..1201 17..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:39 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
CG4753-RB 275..1414 17..1158 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:39 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16379128..16379209 1077..1158 97 <- Minus
3L 16379270..16379627 719..1076 100 <- Minus
3L 16379700..16380235 183..718 100 <- Minus
3L 16380471..16380636 17..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:54 Download gff for BO13094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16372228..16372309 1077..1158 97 <- Minus
arm_3L 16372370..16372727 719..1076 100 <- Minus
arm_3L 16372800..16373335 183..718 100 <- Minus
arm_3L 16373571..16373736 17..182 100   Minus

BO13094.pep Sequence

Translation from 16 to 1174

> BO13094.pep
MSHLRGLGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLH
YSFYCILVCVAEWYAGSKLRVYIDPQDEQKFFGKEHGLLLMNHTYEIDWL
TAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWWMAEFIFLDRNFEKDKV
VIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKHH
LIPRTKGFTTSLPTMRGICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEP
YMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVK
EVPEKIYKPRLSTLLNFLGWATFAVLCILHYLVTSLVAGNWFGFITVLSI
LGGFYSLMEYAVNASKISKASAYGAAAAKKASFLDH

BO13094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4753-PC 380 CG4753-PC 1..380 1..380 2014 100 Plus
CG4753-PA 380 CG4753-PA 1..380 1..380 2014 100 Plus
CG4753-PB 380 CG4753-PB 1..380 1..380 2014 100 Plus
CG4729-PB 386 CG4729-PB 15..381 10..376 1268 62.7 Plus
CG4729-PC 386 CG4729-PC 15..381 10..376 1268 62.7 Plus