Clone BO13095 Report

Search the DGRC for BO13095

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG14275-RA
Protein status:BO13095.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO13095.3prime Sequence

480 bp (479 high quality bases) assembled on 2006-05-08

> BO13095.3prime
ATGGTCTAGAAAGCTTGCATGCCTGAGCATGCTGGCCAGTGCCAGACTGA
CGACAGATCCAACCAGACTGTAGCCCAACTGGCGGACACCCAGCAGGGAG
CTGGCTCCATTGCATCCCTCGTCGGGACAGGTGCAAATGATCTGCTTGTA
GCCCTCGTTGTCGGCGGTGAAGCAAGCGTTTTGGATCTTCTCCGGAATGA
AACCACAGCTTCTCTCGATTCTGCGCTCGTCGTTCTGCTCGAAATTGATC
ACCGTCTTGCGGCAGAAGGCCACCTCACCGCTGGGCGGGACGCAGTCCGT
CAGGTACTGGTTGTCCCTCTGGGCACGAGGAGTGTTCACCACCAGGCCAC
CGCAATCCTCGTTGTCATGCGAATTACACTGATGGCACCGAATGGCATTC
ACTGTTAACAAATTGGCGGCCAAAACAAGGCACATGGCATAGACGTAGGT
TTGTGATTGCCATGTCGACTGATAACTTCG

BO13095.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-PA 447 CG14275-RA 12..444 451..19 2165 100 Minus
CG14275-PB 447 CG14275-RB 12..444 451..19 2165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 848 CG14275-RB 184..627 463..19 2200 99.8 Minus
CG14275-RA 849 CG14275-RA 185..628 463..19 2200 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8332305..8332690 404..19 1930 100 Minus
2L 23513712 2L 8329704..8329764 463..402 260 98.4 Minus
Blast to na_te.dros performed on 2015-02-11 16:36:14 has no hits.

BO13095.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:47 Download gff for BO13095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-PB 1..447 18..463 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:15 Download gff for BO13095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-PB 1..447 18..463 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:10 Download gff for BO13095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 179..628 19..471 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:35 Download gff for BO13095.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 179..628 19..471 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:35 Download gff for BO13095.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8329698..8329764 402..471 92 -> Minus
2L 8332308..8332690 19..401 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:10 Download gff for BO13095.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8329698..8329764 402..471 92 -> Minus
arm_2L 8332308..8332690 19..401 100   Minus

BO13095.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13095.5prime
GAAGTTATCAGTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCC
TTGTTTTGGCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAG
TGTAATTCGCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCC
TCGTGCCCAGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCG
GTGAGGTGGCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGAC
GAGCGCAGAATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAA
CGCTTGCTTCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCT
GTCCCGACGAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAG
TTGGGCTACAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCAT
GCTCAGGCATGCAAGCTTTCTAGACC

BO13095.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-PA 447 CG14275-RA 1..444 17..460 2220 100 Plus
CG14275-PB 447 CG14275-RB 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 848 CG14275-RB 184..627 17..460 2220 100 Plus
CG14275-RA 849 CG14275-RA 185..628 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8332305..8332690 75..460 1930 100 Plus
2L 23513712 2L 8329704..8329764 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:48 has no hits.

BO13095.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:48 Download gff for BO13095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-PB 1..447 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:17 Download gff for BO13095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-PB 1..447 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:52 Download gff for BO13095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 179..628 9..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:35 Download gff for BO13095.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 179..628 9..460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:35 Download gff for BO13095.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8329698..8329764 9..77 94 -> Plus
2L 8332308..8332690 78..460 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:52 Download gff for BO13095.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8329698..8329764 9..77 94 -> Plus
arm_2L 8332308..8332690 78..460 100   Plus

BO13095.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ632675

> BO13095.complete
GAAGTTATCAGTCGACATGGCAATCACAACCTACGTCTATGCCATGTGCC
TTGTTTTGGCCGCCAATTTGTTAACAGTGAATGCCATTCGGTGCCATCAG
TGTAATTCGCATGACAACGAGGATTGCGGTGGCCTGGTGGTGAACACTCC
TCGTGCCCAGAGGGACAACCAGTACCTGACGGACTGCGTCCCGCCCAGCG
GTGAGGTGGCCTTCTGCCGCAAGACGGTGATCAATTTCGAGCAGAACGAC
GAGCGCAGAATCGAGAGAAGCTGTGGTTTCATTCCGGAGAAGATCCAAAA
CGCTTGCTTCACCGCCGACAACGAGGGCTACAAGCAGATCATTTGCACCT
GTCCCGACGAGGGATGCAATGGAGCCAGCTCCCTGCTGGGTGTCCGCCAG
TTGGGCTACAGTCTGGTTGGATCTGTCGTCAGTCTGGCACTGGCCAGCAT
GCTCAGGCATGCAAGCTTTCTAGACCAT

BO13095.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 447 CG14275-PB 1..444 17..460 2220 100 Plus
CG14275-RA 447 CG14275-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-RB 848 CG14275-RB 184..627 17..460 2220 100 Plus
CG14275-RA 849 CG14275-RA 185..628 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8332305..8332690 75..460 1930 100 Plus
2L 23513712 2L 8329704..8329764 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:34 has no hits.

BO13095.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:01 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RB 1..447 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:04 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 177..626 9..460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:58 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 185..628 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:01 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 177..626 9..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:59 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
CG14275-RA 185..628 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:59 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8329704..8329764 17..77 100 -> Plus
2L 8332308..8332690 78..462 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:58 Download gff for BO13095.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8329704..8329764 17..77 100 -> Plus
arm_2L 8332308..8332690 78..462 99   Plus

BO13095.pep Sequence

Translation from 16 to 478

> BO13095.pep
MAITTYVYAMCLVLAANLLTVNAIRCHQCNSHDNEDCGGLVVNTPRAQRD
NQYLTDCVPPSGEVAFCRKTVINFEQNDERRIERSCGFIPEKIQNACFTA
DNEGYKQIICTCPDEGCNGASSLLGVRQLGYSLVGSVVSLALASMLRHAS
FLDH

BO13095.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14275-PB 148 CG14275-PB 1..148 1..148 791 100 Plus
CG14275-PA 148 CG14275-PA 1..148 1..148 791 100 Plus
CG7781-PB 147 CG7781-PB 3..141 6..144 147 29.5 Plus
CG7781-PA 147 CG7781-PA 3..141 6..144 147 29.5 Plus