Clone BO13106 Report

Search the DGRC for BO13106

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG10208-RA
Protein status:BO13106.pep: validated full length
Sequenced Size:862

Clone Sequence Records

BO13106.3prime Sequence

712 bp (647 high quality bases) assembled on 2006-05-08

> BO13106.3prime
ATGGTCTAGAAAGCTTGCCTTGCGACGGAACACTTCGACCTTGAGGGGGT
GGCACTTGTCGTCCGGCACATCGGCGCCCACTGCGATGGAGACATCGCCC
TGTGGACAGGCGCTCAGAGCCACCAGAAGATTCATGTCGGCCACAAACTC
AATGAAATCCCCCTTGCGCGCTGGACTTGCCTTGCAGAAATACTGATGCG
TGTCCCGTGTAAATCCGGTGCACATAAAGATGTTCCACACGTCGTGTACA
TCCTGCTCGGTCAGCCCGCGCTCCTCCACCACCGCCTTGACTAGGGAACT
GTGGCAACTGCCCACCCGATCCTTGCCCGTGATTAGCTTGTAGGTGTAGT
CGTCGCACCGTGTTCCAATTACGTCGTGCAGAGCACCGCCATCCTCATCG
ATGCCATAGGCGGCAAGGGAATCAAACACAAAGGTGGCCATGGGACGCAG
GTGGGGCAGGCAGCTCCACAGACGATCGTAAACGCGCAGATGCGACGAGT
GCAGCTGGCGCGTCTTGCCCGAGTAGAAGCGCTCGGCGGTGTTCTCCAGA
TTCCAAAAGTTCATGTCGCCCACCTGAGAACCTTCGTGGACAGTGACGCG
GCACAAATCACCCTCTTGCATTGTCCAGGTGCGTGCCTCCCGTTTGGGCA
CATCAGTGTCTCACAAGATCGCCAGTCAGGGCACGATAACGTTTATTATC
ATACTCCTCCTT

BO13106.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-PA 831 CG10208-RA 195..828 652..19 3170 100 Minus
CG10208-PA 831 CG10208-RA 133..183 712..662 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-RA 1064 CG10208-RA 228..923 712..19 3430 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23773139..23773819 19..697 3305 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 17:18:52 has no hits.

BO13106.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:00 Download gff for BO13106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-PA 133..831 15..712 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:33 Download gff for BO13106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-PA 133..831 15..712 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:56 Download gff for BO13106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 228..926 15..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:23 Download gff for BO13106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 228..926 15..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:23 Download gff for BO13106.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23773135..23773819 15..697 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:56 Download gff for BO13106.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19598857..19599541 15..697 99 <- Plus

BO13106.5prime Sequence

608 bp (604 high quality bases) assembled on 2006-05-08

> BO13106.5prime
GAAGTTATCAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCG
CCCCCGCCTCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAG
GAACCGCCAGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAA
GGAGGAGTATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGG
AGACACTGATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAG
GGTGATTTGTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACAT
GAACTTTTGGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGA
CGCGCCAGCTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGC
TGCCTGCCCCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGC
CGCCTATGGCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAA
CACGGTGCGACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTG
GGCAGTTGCCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCT
GACCGAGC

BO13106.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-PA 831 CG10208-RA 1..592 17..608 2960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-RA 1064 CG10208-RA 95..687 16..608 2965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23773375..23773819 608..164 2225 100 Minus
3R 32079331 3R 23773886..23774033 163..16 740 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:29:16 has no hits.

BO13106.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:01 Download gff for BO13106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-PA 1..592 17..608 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:34 Download gff for BO13106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-PA 1..592 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:24 Download gff for BO13106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 84..687 4..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:18 Download gff for BO13106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 84..687 4..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:18 Download gff for BO13106.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23773375..23773819 164..608 100 <- Minus
3R 23773886..23774044 4..163 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:24 Download gff for BO13106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19599097..19599541 164..608 100 <- Minus
arm_3R 19599608..19599766 4..163 97   Minus

BO13106.complete Sequence

862 bp assembled on 2006-10-11

GenBank Submission: FJ632676

> BO13106.complete
GAAGTTATCAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCG
CCCCCGCCTCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAG
GAACCGCCAGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAA
GGAGGAGTATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGG
AGACACTGATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAG
GGTGATTTGTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACAT
GAACTTTTGGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGA
CGCGCCAGCTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGC
TGCCTGCCCCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGC
CGCCTATGGCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAA
CACGGTGCGACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTG
GGCAGTTGCCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCT
GACCGAGCAGGATGTACACGACGTGTGGAACATCTTTATGTGCACCGGAT
TTACACGGGACACGCATCAGTATTTCTGCAAGGCAAGTCCAGCGCGCAAG
GGGGATTTCATTGAGTTTGTGGCCGACATGAATCTTCTGGTGGCTCTGAG
CGCCTGTCCACAGGGCGATGTCTCCATCGCAGTGGGCGCCGATGTGCCGG
ACGACAAGTGCCACCCCCTCAAGGTCGAAGTGTTCCGTCGCAAGGCAAGC
TTTCTAGACCAT

BO13106.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-RA 831 CG10208-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-RA 1064 CG10208-RA 95..923 16..844 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23773139..23773819 844..164 3405 100 Minus
3R 32079331 3R 23773886..23774033 163..16 740 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:00:20 has no hits.

BO13106.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:03 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..831 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:06 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 80..922 4..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:04 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 96..923 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:03 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 80..922 4..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:13 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 96..923 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:13 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23773137..23773819 164..846 99 <- Minus
3R 23773886..23774032 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:04 Download gff for BO13106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19599608..19599754 17..163 100   Minus
arm_3R 19598859..19599541 164..846 99 <- Minus

BO13106.pep Sequence

Translation from 16 to 862

> BO13106.pep
MAAVVPTETSAAPASWCGRGAKPRTFEKEPPVICYDKPAASIVSKEEYDN
KRYRALTGDLVETLIVPKREARTWTMQEGDLCRVTVHEGSQVGDMNFWNL
ENTAERFYSGKTRQLHSSHLRVYDRLWSCLPHLRPMATFVFDSLAAYGID
EDGGALHDVIGTRCDDYTYKLITGKDRVGSCHSSLVKAVVEERGLTEQDV
HDVWNIFMCTGFTRDTHQYFCKASPARKGDFIEFVADMNLLVALSACPQG
DVSIAVGADVPDDKCHPLKVEVFRRKASFLDH

BO13106.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-PA 276 CG10208-PA 1..276 1..276 1486 100 Plus