Clone Sequence Records
BO13106.3prime Sequence
712 bp (647 high quality bases) assembled on 2006-05-08
> BO13106.3prime
ATGGTCTAGAAAGCTTGCCTTGCGACGGAACACTTCGACCTTGAGGGGGT
GGCACTTGTCGTCCGGCACATCGGCGCCCACTGCGATGGAGACATCGCCC
TGTGGACAGGCGCTCAGAGCCACCAGAAGATTCATGTCGGCCACAAACTC
AATGAAATCCCCCTTGCGCGCTGGACTTGCCTTGCAGAAATACTGATGCG
TGTCCCGTGTAAATCCGGTGCACATAAAGATGTTCCACACGTCGTGTACA
TCCTGCTCGGTCAGCCCGCGCTCCTCCACCACCGCCTTGACTAGGGAACT
GTGGCAACTGCCCACCCGATCCTTGCCCGTGATTAGCTTGTAGGTGTAGT
CGTCGCACCGTGTTCCAATTACGTCGTGCAGAGCACCGCCATCCTCATCG
ATGCCATAGGCGGCAAGGGAATCAAACACAAAGGTGGCCATGGGACGCAG
GTGGGGCAGGCAGCTCCACAGACGATCGTAAACGCGCAGATGCGACGAGT
GCAGCTGGCGCGTCTTGCCCGAGTAGAAGCGCTCGGCGGTGTTCTCCAGA
TTCCAAAAGTTCATGTCGCCCACCTGAGAACCTTCGTGGACAGTGACGCG
GCACAAATCACCCTCTTGCATTGTCCAGGTGCGTGCCTCCCGTTTGGGCA
CATCAGTGTCTCACAAGATCGCCAGTCAGGGCACGATAACGTTTATTATC
ATACTCCTCCTT
BO13106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-PA | 831 | CG10208-RA | 195..828 | 652..19 | 3170 | 100 | Minus |
CG10208-PA | 831 | CG10208-RA | 133..183 | 712..662 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-RA | 1064 | CG10208-RA | 228..923 | 712..19 | 3430 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23773139..23773819 | 19..697 | 3305 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:18:52 has no hits.
BO13106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:00 Download gff for
BO13106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-PA | 133..831 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:33 Download gff for
BO13106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-PA | 133..831 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:56 Download gff for
BO13106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 228..926 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:23 Download gff for
BO13106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 228..926 | 15..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:23 Download gff for
BO13106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23773135..23773819 | 15..697 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:56 Download gff for
BO13106.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19598857..19599541 | 15..697 | 99 | <- | Plus |
BO13106.5prime Sequence
608 bp (604 high quality bases) assembled on 2006-05-08
> BO13106.5prime
GAAGTTATCAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCG
CCCCCGCCTCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAG
GAACCGCCAGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAA
GGAGGAGTATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGG
AGACACTGATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAG
GGTGATTTGTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACAT
GAACTTTTGGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGA
CGCGCCAGCTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGC
TGCCTGCCCCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGC
CGCCTATGGCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAA
CACGGTGCGACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTG
GGCAGTTGCCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCT
GACCGAGC
BO13106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-PA | 831 | CG10208-RA | 1..592 | 17..608 | 2960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-RA | 1064 | CG10208-RA | 95..687 | 16..608 | 2965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23773375..23773819 | 608..164 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 23773886..23774033 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:29:16 has no hits.
BO13106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:01 Download gff for
BO13106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-PA | 1..592 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:34 Download gff for
BO13106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-PA | 1..592 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:24 Download gff for
BO13106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 84..687 | 4..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:18 Download gff for
BO13106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 84..687 | 4..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:18 Download gff for
BO13106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23773375..23773819 | 164..608 | 100 | <- | Minus |
3R | 23773886..23774044 | 4..163 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:24 Download gff for
BO13106.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19599097..19599541 | 164..608 | 100 | <- | Minus |
arm_3R | 19599608..19599766 | 4..163 | 97 | | Minus |
BO13106.complete Sequence
862 bp assembled on 2006-10-11
GenBank Submission: FJ632676
> BO13106.complete
GAAGTTATCAGTCGACATGGCTGCTGTTGTTCCCACTGAAACCTCCGCCG
CCCCCGCCTCCTGGTGTGGGCGCGGTGCCAAGCCCCGAACCTTTGAAAAG
GAACCGCCAGTCATCTGCTATGACAAGCCCGCAGCTTCGATCGTTTCGAA
GGAGGAGTATGATAATAAACGTTATCGTGCCCTGACTGGCGATCTTGTGG
AGACACTGATTGTGCCCAAACGGGAGGCACGCACCTGGACAATGCAAGAG
GGTGATTTGTGCCGCGTCACTGTCCACGAAGGTTCTCAGGTGGGCGACAT
GAACTTTTGGAATCTGGAGAACACCGCCGAGCGCTTCTACTCGGGCAAGA
CGCGCCAGCTGCACTCGTCGCATCTGCGCGTTTACGATCGTCTGTGGAGC
TGCCTGCCCCACCTGCGTCCCATGGCCACCTTTGTGTTTGATTCCCTTGC
CGCCTATGGCATCGATGAGGATGGCGGTGCTCTGCACGACGTAATTGGAA
CACGGTGCGACGACTACACCTACAAGCTAATCACGGGCAAGGATCGGGTG
GGCAGTTGCCACAGTTCCCTAGTCAAGGCGGTGGTGGAGGAGCGCGGGCT
GACCGAGCAGGATGTACACGACGTGTGGAACATCTTTATGTGCACCGGAT
TTACACGGGACACGCATCAGTATTTCTGCAAGGCAAGTCCAGCGCGCAAG
GGGGATTTCATTGAGTTTGTGGCCGACATGAATCTTCTGGTGGCTCTGAG
CGCCTGTCCACAGGGCGATGTCTCCATCGCAGTGGGCGCCGATGTGCCGG
ACGACAAGTGCCACCCCCTCAAGGTCGAAGTGTTCCGTCGCAAGGCAAGC
TTTCTAGACCAT
BO13106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-RA | 831 | CG10208-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-RA | 1064 | CG10208-RA | 95..923 | 16..844 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23773139..23773819 | 844..164 | 3405 | 100 | Minus |
3R | 32079331 | 3R | 23773886..23774033 | 163..16 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:20 has no hits.
BO13106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:03 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 1..831 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:06 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 80..922 | 4..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:04 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 96..923 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:03 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 80..922 | 4..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:13 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10208-RA | 96..923 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:13 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23773137..23773819 | 164..846 | 99 | <- | Minus |
3R | 23773886..23774032 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:04 Download gff for
BO13106.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19599608..19599754 | 17..163 | 100 | | Minus |
arm_3R | 19598859..19599541 | 164..846 | 99 | <- | Minus |
BO13106.pep Sequence
Translation from 16 to 862
> BO13106.pep
MAAVVPTETSAAPASWCGRGAKPRTFEKEPPVICYDKPAASIVSKEEYDN
KRYRALTGDLVETLIVPKREARTWTMQEGDLCRVTVHEGSQVGDMNFWNL
ENTAERFYSGKTRQLHSSHLRVYDRLWSCLPHLRPMATFVFDSLAAYGID
EDGGALHDVIGTRCDDYTYKLITGKDRVGSCHSSLVKAVVEERGLTEQDV
HDVWNIFMCTGFTRDTHQYFCKASPARKGDFIEFVADMNLLVALSACPQG
DVSIAVGADVPDDKCHPLKVEVFRRKASFLDH
BO13106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10208-PA | 276 | CG10208-PA | 1..276 | 1..276 | 1486 | 100 | Plus |