Clone Sequence Records
BO13107.3prime Sequence
735 bp (698 high quality bases) assembled on 2006-05-08
> BO13107.3prime
ATGGTCTAGAAAGCTTGCCTGCCCACTGGTGGTCATCACATTGATCAGGC
CGGGCATAACCTCCGCCTGAATGGGTCCATATTCCACCCGCTCGCCGTCC
ACCACCAGGATGCCATCGGAGCTGCTCGGCTCGATGCGGAATGCCCGACA
AGGCACCACCTTGATGAACGGATCCTCGCCGATGGGCAGATGGGTGCCTG
CGTTTAGGTTCAGCATGAAATTGAGCAGCTGATGGCGACTAACGCCTCTC
CGGATGATCACCAGGTAGATGAGGCCATCGTCCAGACGGGATTCGGGCGC
AAAGAAGACATCGGAGGAGAGATGGGTGGTATAGGCGGCATGGACCATCA
CAAAGTCACCATCCTCGCAGATCCAACCATCGCTGCTGAGCAGTGGCATC
TGTAATGGTGGAATGGTGCCCGTTGGCACCCTCTCAGCGAATTCCGCATT
TGCTGCCTCGATCCGCTGGCTAATGCTCATCCGGCTGCGATTGGATCGCA
TACTGGGTCCGCCCAGGGAGTAATATGCCGTTCGCCTGGACATGGCCGAG
TGCCAACTGTCGGCATGCTGGCGGTAAACCGAACGATCCAAAGATATGGC
ATCGGCGAACTGTTCTCCATCCAAGACCGCCTCCCCCTCCTCCTCCTCGG
GTAGATCATGGAATTCCCCGGCATTCAGAGGCAGAGATGAGCGGATTCCT
GCAGCCGTTGATTCTGCAAGCAACTCTCGAGCCGC
BO13107.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1747-PB | 1926 | Sk1-RB | 1207..1923 | 735..19 | 3560 | 99.8 | Minus |
| CG1747-PA | 1926 | Sk1-RA | 1207..1923 | 735..19 | 3560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 1509..2225 | 735..19 | 3570 | 99.9 | Minus |
| Sk1-RB | 2616 | CG1747-RB | 1443..2159 | 735..19 | 3570 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11444839..11445555 | 735..19 | 3570 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:38:17 has no hits.
BO13107.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:02 Download gff for
BO13107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-PB | 1207..1926 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:36 Download gff for
BO13107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1747-PA | 1207..1926 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:32 Download gff for
BO13107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 1443..2159 | 19..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:28 Download gff for
BO13107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 1443..2159 | 19..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:28 Download gff for
BO13107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11444839..11445555 | 19..735 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:32 Download gff for
BO13107.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11338872..11339588 | 19..735 | 99 | | Minus |
BO13107.5prime Sequence
731 bp (600 high quality bases) assembled on 2006-05-08
> BO13107.5prime
GAAGTTATCAGTCGACATGACGGCCAACACAGGGACGTCGGGTGAAAATC
TGATGGGAAATGGTGGAAAGACGCATGAACCCTCCACGCCCACTTCGGAT
ACGGAAGTGGCCAGCGGCACGCCAACGGAACTGAGCGAAATCTTCTTCGT
GGACAATAGCCGGCGCAAGCAGAGCATCAAAATCCAGGTGAAACTATGCC
CGGAAGGCGTTTACCTGCGACGCGAAACCGAGGAAGATGATCACATCAAT
GAGCAGCTGATCAGGATCGATGATATCATAGGATCACGCTACGGACGGCG
TTTGAAGAAACGAGCCCGAGGCGGTCTAAACTCCTGCCGCAATCCAAATG
TTCCGGGCCAGGAGGCGGATTCGGAACCGGATAGCGATAATAGCGCCTAT
TTGTACATCTATGCATATTTGAAGAAGGAGAAACCGTTGCGACGTGTCCA
AACGCTCCGGATTCTACGCTTTCGTTCGAGCAATGACTACGGAGTGAATC
TACAGACCGCCGAGATGTGGCATCATACGATTCGAAAGCACAAGCGTGGC
AATGGCAGCAGTTCGCCCGCCGATTGTGGCAAACAGTTGCTCATCCTACT
GAATCCGAAATCCGGTTCGGGCAAAGGGCGTGAGCTCTTCCAGAAACAGG
TGGCACCTTTGCTGACGGAAGCAGAGGTGCAATACGATCTCCAGATCACC
ACACATCCGCAGTATGCCAAGGAGTTCGTGC
BO13107.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1747-PB | 1926 | Sk1-RB | 1..715 | 17..731 | 3575 | 100 | Plus |
| CG1747-PA | 1926 | Sk1-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 303..1017 | 17..731 | 3575 | 100 | Plus |
| Sk1-RB | 2616 | CG1747-RB | 237..951 | 17..731 | 3575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11443633..11444347 | 17..731 | 3575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:44:54 has no hits.
BO13107.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:03 Download gff for
BO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-PB | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:38 Download gff for
BO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1747-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:41 Download gff for
BO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 230..951 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:09 Download gff for
BO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 230..951 | 10..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:09 Download gff for
BO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11443626..11444347 | 10..731 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:41 Download gff for
BO13107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11337659..11338380 | 10..731 | 99 | | Plus |
BO13107.complete Sequence
1957 bp assembled on 2008-01-17
GenBank Submission: FJ632677
> BO13107.complete
GAAGTTATCAGTCGACATGACGGCCAACACAGGGACGTCGGGTGAAAATC
TGATGGGAAATGGTGGAAAGACGCATGAACCCTCCACGCCCACTTCGGAT
ACGGAAGTGGCCAGCGGCACGCCAACGGAACTGAGCGAAATCTTCTTCGT
GGACAATAGCCGGCGCAAGCAGAGCATCAAAATCCAGGTGAAACTATGCC
CGGAAGGCGTTTACCTGCGACGCGAAACCGAGGAAGATGATCACATCAAT
GAGCAGCTGATCAGGATCGATGATATCATAGGATCACGCTACGGACGGCG
TTTGAAGAAACGAGCCCGAGGCGGTCTAAACTCCTGCCGCAATCCAAATG
TTCCGGGCCAGGAGGCGGATTCGGAACCGGATAGCGATAATAGCGCCTAT
TTGTACATCTATGCATATTTGAAGAAGGAGAAACCGTTGCGACGTGTCCA
AACGCTCCGGATTCTACGCTTTCGTTCGAGCAATGACTACGGAGTGAATC
TACAGACCGCCGAGATGTGGCATCATACGATTCGAAAGCACAAGCGTGGC
AATGGCAGCAGTTCGCCCGCCGATTGTGGCAAACAGTTGCTCATCCTACT
GAATCCGAAATCCGGTTCGGGCAAAGGGCGTGAGCTCTTCCAGAAACAGG
TGGCACCTTTGCTGACGGAAGCAGAGGTGCAATACGATCTCCAGATCACC
ACACATCCGCAGTATGCCAAGGAGTTCGTGCGGACCAGAAGGGATCTGCT
GACACGCTATTCGGGCATTGTGGTTGCCTCCGGCGATGGTCTATTCTACG
AAGTGCTCAATGGGCTAATGGAACGCATGGATTGGCGCCGAGCCTGCAGG
GAGCTACCGCTTGGCATTATACCATGTGGTTCCGGGAATGGTCTGGCCAA
AAGTGTGGCCCATCATTGCAATGAACCGTACGAACCGAAGCCCATTCTCC
ACGCCACCTTGACCTGCATGGCGGGCAAAAGTACACCCATGGATGTGGTC
AGAGTGGAGCTGGCGACGCGGGACAAGCACTTTGTGATGTACTCCTTCCT
GTCGGTGGGCTGGGGTCTGATAGCCGACATCGATATAGAGAGCGAGCGAT
TGAGATCGATTGGAGCGCAAAGGTTTACGCTGTGGGCCATCAAGCGATTG
ATCGGGCTGCGCAGCTACAAAGGCCGAGTGTCCTATCTACTGGGCAAGGG
CAAGAAGGAACCACCAGTGGAAGCGGCTCGAGAGTTGCCTGCAGAATCAA
CGGCTGCAGGAATCCGCTCATCTCTGCCTCTGAATGCCGGGGAATTCCAT
GATCTACCCGAGGAGGAGGAGGGGGAGGCGGTCTTGGATGGAGAACAGTT
CGCCGATGCCATATCTTTGGATCGTTCGGTTTACCGCCAGCATGCCGACA
GTTGGCACTCGGCCATGTCCAGGCGAACGGCATATTACTCCCTGGGCGGA
CCCAGTATGCGATCCAATCGCAGCCGGATGAGCATTAGCCAGCGGATCGA
GGCAGCAAATGCGGAATTCGCTGAGAGGGTGCCAACGGGCACCATTCCAC
CATTACAGATGCCACTGCTCAGCAGCGATGGTTGGATCTGCGAGGATGGT
GACTTTGTGATGGTCCATGCCGCCTATACCACCCATCTCTCCTCCGATGT
CTTCTTTGCGCCCGAATCCCGTCTGGACGATGGCCTCATCTACCTGGTGA
TCATCCGGAGAGGCGTTAGTCGCCATCAGCTGCTCAATTTCATGCTGAAC
CTAAACGCAGGCACCCATCTGCCCATCGGCGAGGATCCGTTCATCAAGGT
GGTGCCTTGTCGGGCATTCCGCATCGAGCCGAGCAGCTCCGATGGCATCC
TGGTGGTGGACGGCGAGCGGGTGGAATATGGACCCATTCAGGCGGAGGTT
ATGCCCGGCCTGATCAATGTGATGACCACCAGTGGGCAGGCAAGCTTTCT
AGACCAT
BO13107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 1926 | CG1747-PA | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| Sk1-RB | 1926 | CG1747-PB | 1..1923 | 17..1939 | 9615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 303..2225 | 17..1939 | 9615 | 100 | Plus |
| Sk1-RB | 2616 | CG1747-RB | 237..2159 | 17..1939 | 9615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11443633..11445555 | 17..1939 | 9615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:36:53 has no hits.
BO13107.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:43 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 1..1926 | 17..1940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:50 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 95..2017 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:41 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 237..2159 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:43 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 88..2017 | 10..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:07 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 237..2159 | 17..1941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:07 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11443633..11445555 | 17..1941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:41 Download gff for
BO13107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11337666..11339588 | 17..1941 | 99 | | Plus |
BO13107.pep Sequence
Translation from 16 to 1957
> BO13107.pep
MTANTGTSGENLMGNGGKTHEPSTPTSDTEVASGTPTELSEIFFVDNSRR
KQSIKIQVKLCPEGVYLRRETEEDDHINEQLIRIDDIIGSRYGRRLKKRA
RGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRIL
RFRSSNDYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSG
SGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSG
IVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHH
CNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWG
LIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPP
VEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAIS
LDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAE
FAERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYTTHLSSDVFFAPE
SRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRA
FRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQASFLDH
BO13107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-PA | 641 | CG1747-PA | 1..641 | 1..641 | 3335 | 100 | Plus |
| Sk1-PB | 641 | CG1747-PB | 1..641 | 1..641 | 3335 | 100 | Plus |
| Sk2-PA | 661 | CG32484-PA | 7..658 | 18..636 | 1195 | 41.1 | Plus |
