Clone Sequence Records
BO13109.3prime Sequence
614 bp (538 high quality bases) assembled on 2006-05-08
> BO13109.3prime
ATGGTCTAGAAAGCTTGCGTAGTAAGCAATGCCGGTGTGGTCACGGATCC
AGTCCAAGTGGTAGGTCACACGCTGGAAGCCAGCGGGGTGGCCAGCCTGG
CAACCGGCTCCCGACACCCAGTTGGTGACTCCCACAAGCTTGCTGCCGTC
ATGGGTGACCAGAGGACCGCCGGAGTCGCCACCGCAGGTGCCCTTGCCAT
CGACCACGCGCACGCAGATGATGTTGTCGCCGACGGTGCCGGTTCCGTAG
TAGCTGGCGCACTCGGAGTTGTGGATGATCTGGAGATCGACACACTGCAG
GTAGTCGGGCAGTGGGCTGCCGTCATAGGTGCCTCCCCAGCCGCAGGCAA
CAGCCCACCATTCGTTGTAGTCGTTGTAGCGATCGTTGTAGCTGGGCAGC
TCCACCTTGTTCACCATGTGCCAGAAGTCCACGTGGGGAATGCGGATGAG
GGCGAATGTCAGCAGATCCGTGGGTGATGAAGTTGCCCGCTTCCAACCCA
GTGGGTGAAACTGGGCGTTGGTGCGCCAGGTTGCTCCGAAGTAGACAGTC
ACTGCATCACCTCCGATGCAGTGCTCGGCGGTGAGGACCCACTCGTTGGA
GATGATGGAGCCAC
BO13109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7118-PA | 783 | Jon66Ci-RA | 344..780 | 455..19 | 2185 | 100 | Minus |
| CG7170-PA | 789 | Jon66Cii-RA | 358..552 | 453..259 | 975 | 100 | Minus |
| CG7118-PA | 783 | Jon66Ci-RA | 188..293 | 614..509 | 530 | 100 | Minus |
| CG8871-PA | 777 | Jon25Biii-RA | 347..534 | 455..268 | 515 | 90.9 | Minus |
| CG8867-PA | 801 | Jon25Bi-RA | 388..453 | 438..373 | 280 | 96.9 | Minus |
| CG8867-PB | 801 | Jon25Bi-RB | 388..453 | 438..373 | 280 | 96.9 | Minus |
| CG7170-PA | 789 | Jon66Cii-RA | 615..685 | 190..120 | 205 | 91.5 | Minus |
| CG18030-PA | 804 | Jon99Fi-RA | 397..456 | 435..376 | 200 | 93.3 | Minus |
| CG7170-PA | 789 | Jon66Cii-RA | 718..786 | 87..19 | 195 | 91.3 | Minus |
| CG7170-PA | 789 | Jon66Cii-RA | 265..305 | 549..509 | 180 | 97.5 | Minus |
| CG8871-PA | 777 | Jon25Biii-RA | 712..767 | 84..29 | 180 | 92.8 | Minus |
| CG2229-PA | 804 | Jon99Fii-RA | 397..456 | 435..376 | 175 | 91.6 | Minus |
| CG8579-PA | 816 | Jon44E-RA | 424..462 | 411..373 | 170 | 97.4 | Minus |
| CG7118-PA | 783 | Jon66Ci-RA | 313..344 | 487..456 | 160 | 100 | Minus |
| CG8871-PA | 777 | Jon25Biii-RA | 188..241 | 614..561 | 145 | 90.7 | Minus |
| CG8867-PA | 801 | Jon25Bi-RA | 266..302 | 545..509 | 135 | 94.5 | Minus |
| CG8867-PB | 801 | Jon25Bi-RB | 266..302 | 545..509 | 135 | 94.5 | Minus |
| CG8869-PA | 831 | Jon25Bii-RA | 415..456 | 435..394 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Ci-RA | 838 | CG7118-RA | 206..798 | 614..19 | 2905 | 99.5 | Minus |
| Jon66Cii-RA | 830 | CG7170-RA | 200..789 | 614..19 | 1735 | 86.8 | Minus |
| Jon25Biii-RA | 827 | CG8871-RA | 207..795 | 614..20 | 1215 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8391745..8392337 | 614..19 | 2830 | 99.5 | Minus |
| 3L | 28110227 | 3L | 8392861..8393450 | 19..614 | 1605 | 86.5 | Plus |
| 2L | 23513712 | 2L | 4949973..4950561 | 20..614 | 1090 | 80.8 | Plus |
| 3R | 32079331 | 3R | 30487347..30487524 | 275..452 | 485 | 84.8 | Plus |
| 2L | 23513712 | 2L | 4954632..4954753 | 334..455 | 355 | 86.1 | Plus |
| 3L | 28110227 | 3L | 6053938..6054074 | 335..472 | 280 | 81.9 | Plus |
| 3L | 28110227 | 3L | 6052755..6052857 | 455..353 | 275 | 84.5 | Minus |
| 2L | 23513712 | 2L | 4954326..4954497 | 19..190 | 200 | 74.4 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:32:02 has no hits.
BO13109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:04 Download gff for
BO13109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7118-PA | 188..783 | 15..614 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:39 Download gff for
BO13109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7118-PA | 188..783 | 15..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:01:13 Download gff for
BO13109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 206..803 | 13..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:36 Download gff for
BO13109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 206..803 | 13..614 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:36 Download gff for
BO13109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8391745..8392342 | 13..614 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:01:13 Download gff for
BO13109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8384845..8385442 | 13..614 | 99 | | Minus |
BO13109.5prime Sequence
561 bp (494 high quality bases) assembled on 2006-05-08
> BO13109.5prime
GAAGTTATCAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCG
TGGCCTCCGCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCC
AAGGTGGCCAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGA
GGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGT
GCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGC
ATCGGAGGTGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAA
CGCCCAGTTCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGAT
CTGCTGACATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATG
GTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAA
CGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCC
CACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCC
CAGTGCGCCAG
BO13109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7118-PA | 783 | Jon66Ci-RA | 1..545 | 17..561 | 2700 | 99.8 | Plus |
| CG7170-PA | 789 | Jon66Cii-RA | 358..552 | 362..556 | 950 | 99.4 | Plus |
| CG8871-PA | 777 | Jon25Biii-RA | 340..534 | 353..547 | 525 | 90.7 | Plus |
| CG7170-PA | 789 | Jon66Cii-RA | 110..200 | 117..207 | 430 | 98.9 | Plus |
| CG8867-PA | 801 | Jon25Bi-RA | 367..453 | 356..442 | 285 | 93.1 | Plus |
| CG8867-PB | 801 | Jon25Bi-RB | 367..453 | 356..442 | 285 | 93.1 | Plus |
| CG8871-PA | 777 | Jon25Biii-RA | 133..241 | 149..257 | 270 | 89.9 | Plus |
| CG7170-PA | 789 | Jon66Cii-RA | 265..320 | 269..324 | 255 | 98.2 | Plus |
| CG18030-PA | 804 | Jon99Fi-RA | 397..456 | 380..439 | 200 | 93.3 | Plus |
| CG2229-PA | 804 | Jon99Fii-RA | 397..456 | 380..439 | 175 | 91.6 | Plus |
| CG8867-PA | 801 | Jon25Bi-RA | 266..309 | 273..316 | 170 | 95.4 | Plus |
| CG8867-PB | 801 | Jon25Bi-RB | 266..309 | 273..316 | 170 | 95.4 | Plus |
| CG8579-PA | 816 | Jon44E-RA | 424..462 | 404..442 | 170 | 97.4 | Plus |
| CG8871-PA | 777 | Jon25Biii-RA | 262..303 | 275..316 | 160 | 95.2 | Plus |
| CG8867-PA | 801 | Jon25Bi-RA | 133..174 | 149..190 | 160 | 95.2 | Plus |
| CG8867-PB | 801 | Jon25Bi-RB | 133..174 | 149..190 | 160 | 95.2 | Plus |
| CG6580-PA | 780 | Jon65Aii-RA | 340..378 | 356..394 | 145 | 94.8 | Plus |
| CG8869-PA | 831 | Jon25Bii-RA | 415..456 | 380..421 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Ci-RA | 838 | CG7118-RA | 17..563 | 15..561 | 2720 | 99.8 | Plus |
| Jon66Cii-RA | 830 | CG7170-RA | 113..555 | 117..556 | 1770 | 93.5 | Plus |
| Jon25Biii-RA | 827 | CG8871-RA | 19..553 | 16..547 | 1325 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8391556..8392102 | 15..561 | 2720 | 99.8 | Plus |
| 3L | 28110227 | 3L | 8393095..8393537 | 556..117 | 1745 | 93.5 | Minus |
| 2L | 23513712 | 2L | 4950215..4950749 | 547..16 | 1275 | 83 | Minus |
| 3R | 32079331 | 3R | 30487347..30487531 | 540..356 | 505 | 84.9 | Minus |
| 2L | 23513712 | 2L | 4954791..4955054 | 340..86 | 395 | 78.4 | Minus |
| 3L | 28110227 | 3L | 6053938..6054152 | 480..266 | 385 | 78.6 | Minus |
| 2L | 23513712 | 2L | 4954632..4954757 | 481..356 | 375 | 86.5 | Minus |
| 3L | 28110227 | 3L | 6052751..6052857 | 356..462 | 295 | 85 | Plus |
| 2L | 23513712 | 2L | 4952922..4953001 | 191..112 | 235 | 86.2 | Minus |
Blast to na_te.dros performed 2015-02-13 08:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5554..5592 | 541..503 | 105 | 74.4 | Minus |
BO13109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:05 Download gff for
BO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7118-PA | 1..545 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:41 Download gff for
BO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7118-PA | 1..545 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:47 Download gff for
BO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 8..563 | 4..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:50 Download gff for
BO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 8..563 | 4..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:50 Download gff for
BO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8391547..8392102 | 4..561 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:47 Download gff for
BO13109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8384647..8385202 | 4..561 | 99 | | Plus |
BO13109.complete Sequence
814 bp assembled on 2008-11-10
GenBank Submission: KX794079
> BO13109.complete
GAAGTTATCAGTCGACATGAAGGTGTTCCTAACTATTCTGGCTTTGGCCG
TGGCCTCCGCCTCGGCGTACGAGAGCGTCGTGCACCCCAAGGATCTGTCC
AAGGTGGCCAAGATCGAGGGTCGCATCACCAACGGCTATCCGGCTGAGGA
GGGCAAGGCTCCCTACACCGTCGGTCTGGGTTTCAGCGGCGGCTGGTGGT
GCGGTGGCTCCATCATCTCCAACGAGTGGGTCCTCACCGCCGAGCACTGC
ATCGGAGGTGATGCAGTGACTGTCTACTTCGGAGCAACCTGGCGCACCAA
CGCCCAGTTCACCCACTGGGTTGGAAGCGGCAACTTCATCACCCACGGAT
CTGCTGACATCGCCCTCATCCGCATTCCCCACGTGGACTTCTGGCACATG
GTGAACAAGGTGGAGCTGCCCAGCTACAACGATCGCTACAACGACTACAA
CGAATGGTGGGCTGTTGCCTGCGGCTGGGGAGGCACCTATGACGGCAGCC
CACTGCCCGACTACCTGCAGTGTGTCGATCTCCAGATCATCCACAACTCC
GAGTGCGCCAGCTACTACGGAACCGGCACCGTCGGCGACAACATCATCTG
CGTGCGCGTGGTCGATGGCAAGGGCACCTGCGGTGGCGACTCCGGCGGTC
CTCTGGTCACCCATGACGGCAGCAAGCTTGTGGGAGTCACCAACTGGGTG
TCGGGAGCCGGTTGCCAGGCTGGCCACCCCGCTGGCTTCCAGCGTGTGAC
CTACCACTTGGACTGGATCCGTGACCACACCGGCATTGCTTACTACGCAA
GCTTTCTAGACCAT
BO13109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Ci-RA | 783 | CG7118-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
| Jon66Cii-RA | 789 | CG7170-PA | 110..786 | 117..796 | 2145 | 88.3 | Plus |
| Jon25Biii-RA | 777 | CG8871-PA | 1..776 | 17..795 | 1530 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Ci-RA | 838 | CG7118-RA | 17..798 | 15..796 | 3910 | 100 | Plus |
| Jon66Cii-RA | 830 | CG7170-RA | 113..789 | 117..796 | 2145 | 88.3 | Plus |
| Jon25Biii-RA | 827 | CG8871-RA | 19..795 | 16..795 | 1535 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8391556..8392337 | 15..796 | 3910 | 100 | Plus |
| 3L | 28110227 | 3L | 8392861..8393537 | 796..117 | 2145 | 88.3 | Minus |
| 2L | 23513712 | 2L | 4949973..4950749 | 795..16 | 1535 | 80.3 | Minus |
| 3R | 32079331 | 3R | 30487347..30487531 | 540..356 | 505 | 84.9 | Minus |
| 3R | 32079331 | 3R | 30489360..30489544 | 356..540 | 505 | 84.9 | Plus |
| 3R | 32079331 | 3R | 29922608..29922792 | 356..540 | 460 | 83.2 | Plus |
| 3R | 32079331 | 3R | 29924037..29924221 | 540..356 | 460 | 83.2 | Minus |
| 2L | 23513712 | 2L | 4954791..4955054 | 340..86 | 395 | 78.4 | Minus |
| 3L | 28110227 | 3L | 6053938..6054152 | 480..266 | 385 | 78.6 | Minus |
| 2L | 23513712 | 2L | 4954632..4954757 | 481..356 | 375 | 86.5 | Minus |
| 2R | 25286936 | 2R | 8691844..8692089 | 356..601 | 360 | 76.4 | Plus |
| 3L | 28110227 | 3L | 6052751..6052857 | 356..462 | 295 | 85 | Plus |
| 3R | 32079331 | 3R | 30489083..30489320 | 109..337 | 295 | 76.9 | Plus |
| 3R | 32079331 | 3R | 30487571..30487808 | 337..109 | 280 | 76.5 | Minus |
| 3R | 32079331 | 3R | 29924258..29924490 | 340..117 | 255 | 76 | Minus |
| 2L | 23513712 | 2L | 4952922..4953001 | 191..112 | 235 | 86.2 | Minus |
| 2R | 25286936 | 2R | 8691573..8691718 | 109..251 | 215 | 78.1 | Plus |
| 3R | 32079331 | 3R | 30487110..30487271 | 786..625 | 210 | 75.3 | Minus |
| 2L | 23513712 | 2L | 4954326..4954497 | 796..625 | 200 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:28:39 has no hits.
BO13109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:10 Download gff for
BO13109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 6..801 | 4..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:34 Download gff for
BO13109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 19..798 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:50 Download gff for
BO13109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 17..796 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:22 Download gff for
BO13109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon66Ci-RA | 19..798 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:22 Download gff for
BO13109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8391558..8392337 | 17..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:34 Download gff for
BO13109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8384658..8385437 | 17..798 | 99 | | Plus |
BO13109.pep Sequence
Translation from 16 to 814
> BO13109.pep
MKVFLTILALAVASASAYESVVHPKDLSKVAKIEGRITNGYPAEEGKAPY
TVGLGFSGGWWCGGSIISNEWVLTAEHCIGGDAVTVYFGATWRTNAQFTH
WVGSGNFITHGSADIALIRIPHVDFWHMVNKVELPSYNDRYNDYNEWWAV
ACGWGGTYDGSPLPDYLQCVDLQIIHNSECASYYGTGTVGDNIICVRVVD
GKGTCGGDSGGPLVTHDGSKLVGVTNWVSGAGCQAGHPAGFQRVTYHLDW
IRDHTGIAYYASFLDH
BO13109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon66Ci-PA | 260 | CG7118-PA | 1..260 | 1..260 | 1454 | 100 | Plus |
| Jon66Cii-PA | 262 | CG7170-PA | 1..262 | 1..260 | 1198 | 82.2 | Plus |
| Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..259 | 1179 | 82.3 | Plus |
| Jon25Bi-PB | 266 | CG8867-PB | 1..266 | 1..260 | 940 | 68.3 | Plus |
| Jon99Fi-PA | 267 | CG18030-PA | 4..267 | 5..259 | 871 | 63.1 | Plus |
