Clone Sequence Records
BO13113.3prime Sequence
656 bp (628 high quality bases) assembled on 2006-05-08
> BO13113.3prime
ATGGTCTAGAAAGCTTGCGTAGCCCGCCTCATCGGAATCGGGAGCTGGTG
TCGTCACGCCGGCGATTCCATTAACTCCGCCAGATGATCCCTGCAGGATG
GGTCCCGAGAAGCTGAGGAACTTGGAAACCACATTGCCCAATCCGGCGTT
CGCATTTCCGCCGCCCGAGGAGGAGCCACTAAAGGCGGTAATCGTGGTCA
GCACACCGGTGGTCAGGTCATTAGCAATGTTGCCAATCGAACGGATCTTT
GGCGACACCACGGCGGTAATCAGAGTCTGGAAGTCCTTGATGGGCACCGG
CGACTTGATGTCCCACTGCTTGTTCTTTTCGATATTCGATCGGTCCAGCT
GCTCGATCACCCGCGTCTTTGTATCCAGGAAGTTGTCGATTTTGCCAAAC
ACAAAACCGAGCACTGCGTTCTTAGCCTCGAATGTGGCATCGGGCAGTTT
TCTTTTGTTGCGCTCCTGGACACTTAACACCTCCTCTGCGTTGATAGGAT
TCAAGTCGGGATCGCTGCTATCCTGGAAATTCGCCTCCAGTTCGGAATTT
GTTTGCTGAGGTGCGGGAAAGCCCAGCGATAACGATAGCAGTGCCGATAG
CACGGCCATCGATAGTAATTAACGGCTCCTGGTGAACTGCATGTCGACTG
ATAACT
BO13113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15251-PA | 627 | CG15251-RA | 1..624 | 642..19 | 3095 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 1134 | CG43386-RD | 257..880 | 642..19 | 3105 | 99.8 | Minus |
CG43386-RC | 1036 | CG43386-RC | 159..782 | 642..19 | 3105 | 99.8 | Minus |
CG43386-RB | 716 | CG43386-RB | 159..317 | 642..484 | 780 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9967577..9967951 | 19..393 | 1875 | 100 | Plus |
X | 23542271 | X | 9970352..9970511 | 483..642 | 785 | 99.4 | Plus |
X | 23542271 | X | 9968019..9968110 | 394..485 | 460 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 20:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 888..932 | 78..34 | 108 | 71.1 | Minus |
BO13113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:12 Download gff for
BO13113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-PA | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:51 Download gff for
BO13113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-PA | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:23:58 Download gff for
BO13113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..782 | 19..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:19 Download gff for
BO13113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..782 | 19..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:19 Download gff for
BO13113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9967577..9967951 | 19..393 | 100 | <- | Plus |
X | 9968019..9968108 | 394..483 | 100 | <- | Plus |
X | 9970353..9970511 | 484..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:23:58 Download gff for
BO13113.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9861610..9861984 | 19..393 | 100 | <- | Plus |
arm_X | 9862052..9862141 | 394..483 | 100 | <- | Plus |
arm_X | 9864386..9864544 | 484..642 | 99 | | Plus |
BO13113.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO13113.5prime
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCAC
CGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCG
GAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTC
TCGGGACCCATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGG
CGTGACGACACCAGCTCCCGATTCCGATGAGGCGGGCTACGCAAGCTTTC
TAGACC
BO13113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15251-PA | 627 | CG15251-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 1134 | CG43386-RD | 257..880 | 17..640 | 3120 | 100 | Plus |
CG43386-RC | 1036 | CG43386-RC | 159..782 | 17..640 | 3120 | 100 | Plus |
CG43386-RB | 716 | CG43386-RB | 159..317 | 17..175 | 795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9967577..9967951 | 640..266 | 1875 | 100 | Minus |
X | 23542271 | X | 9970352..9970511 | 176..17 | 800 | 100 | Minus |
X | 23542271 | X | 9968019..9968110 | 265..174 | 460 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 888..932 | 581..625 | 108 | 71.1 | Plus |
BO13113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:12 Download gff for
BO13113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-PA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:52 Download gff for
BO13113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-PA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:34 Download gff for
BO13113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..782 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:09 Download gff for
BO13113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..782 | 17..640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:09 Download gff for
BO13113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9967577..9967951 | 266..640 | 100 | <- | Minus |
X | 9968019..9968108 | 176..265 | 100 | <- | Minus |
X | 9970353..9970511 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:34 Download gff for
BO13113.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9861610..9861984 | 266..640 | 100 | <- | Minus |
arm_X | 9862052..9862141 | 176..265 | 100 | <- | Minus |
arm_X | 9864386..9864544 | 17..175 | 100 | | Minus |
BO13113.complete Sequence
658 bp assembled on 2006-10-11
GenBank Submission: FJ632678
> BO13113.complete
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCAC
CGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCG
GAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTC
TCGGGACCCATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGG
CGTGACGACACCAGCTCCCGATTCCGATGAGGCGGGCTACGCAAGCTTTC
TAGACCAT
BO13113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 627 | CG43386-PD | 1..624 | 17..640 | 3120 | 100 | Plus |
CG43386-RC | 627 | CG43386-PC | 1..624 | 17..640 | 3120 | 100 | Plus |
CG43386-RB | 462 | CG43386-PB | 1..159 | 17..175 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-RD | 1134 | CG43386-RD | 257..880 | 17..640 | 3120 | 100 | Plus |
CG43386-RC | 1036 | CG43386-RC | 159..782 | 17..640 | 3120 | 100 | Plus |
CG43386-RB | 716 | CG43386-RB | 159..317 | 17..175 | 795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9967577..9967951 | 640..266 | 1875 | 100 | Minus |
X | 23542271 | X | 9970352..9970511 | 176..17 | 800 | 100 | Minus |
X | 23542271 | X | 9968019..9968110 | 265..174 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osvaldo | 1543 | Osvaldo OSV 1543bp | 888..932 | 581..625 | 108 | 71.1 | Plus |
BO13113.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:04 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-RA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:07 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-RA | 153..776 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:19 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..782 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:04 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15251-RA | 153..776 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:14 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43386-RC | 159..782 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:14 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9967575..9967951 | 266..642 | 99 | <- | Minus |
X | 9968019..9968108 | 176..265 | 100 | <- | Minus |
X | 9970353..9970511 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:19 Download gff for
BO13113.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9861608..9861984 | 266..642 | 99 | <- | Minus |
arm_X | 9862052..9862141 | 176..265 | 100 | <- | Minus |
arm_X | 9864386..9864544 | 17..175 | 100 | | Minus |
BO13113.pep Sequence
Translation from 16 to 658
> BO13113.pep
MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI
NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD
RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT
ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA
PDSDEAGYASFLDH
BO13113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43386-PD | 208 | CG43386-PD | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PC | 208 | CG15251-PA | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PB | 153 | CG15250-PA | 1..100 | 1..101 | 268 | 62.4 | Plus |