Clone BO13113 Report

Search the DGRC for BO13113

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG15251-RA
Protein status:BO13113.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO13113.3prime Sequence

656 bp (628 high quality bases) assembled on 2006-05-08

> BO13113.3prime
ATGGTCTAGAAAGCTTGCGTAGCCCGCCTCATCGGAATCGGGAGCTGGTG
TCGTCACGCCGGCGATTCCATTAACTCCGCCAGATGATCCCTGCAGGATG
GGTCCCGAGAAGCTGAGGAACTTGGAAACCACATTGCCCAATCCGGCGTT
CGCATTTCCGCCGCCCGAGGAGGAGCCACTAAAGGCGGTAATCGTGGTCA
GCACACCGGTGGTCAGGTCATTAGCAATGTTGCCAATCGAACGGATCTTT
GGCGACACCACGGCGGTAATCAGAGTCTGGAAGTCCTTGATGGGCACCGG
CGACTTGATGTCCCACTGCTTGTTCTTTTCGATATTCGATCGGTCCAGCT
GCTCGATCACCCGCGTCTTTGTATCCAGGAAGTTGTCGATTTTGCCAAAC
ACAAAACCGAGCACTGCGTTCTTAGCCTCGAATGTGGCATCGGGCAGTTT
TCTTTTGTTGCGCTCCTGGACACTTAACACCTCCTCTGCGTTGATAGGAT
TCAAGTCGGGATCGCTGCTATCCTGGAAATTCGCCTCCAGTTCGGAATTT
GTTTGCTGAGGTGCGGGAAAGCCCAGCGATAACGATAGCAGTGCCGATAG
CACGGCCATCGATAGTAATTAACGGCTCCTGGTGAACTGCATGTCGACTG
ATAACT

BO13113.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15251-PA 627 CG15251-RA 1..624 642..19 3095 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 1134 CG43386-RD 257..880 642..19 3105 99.8 Minus
CG43386-RC 1036 CG43386-RC 159..782 642..19 3105 99.8 Minus
CG43386-RB 716 CG43386-RB 159..317 642..484 780 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967577..9967951 19..393 1875 100 Plus
X 23542271 X 9970352..9970511 483..642 785 99.4 Plus
X 23542271 X 9968019..9968110 394..485 460 100 Plus
Blast to na_te.dros performed 2015-02-02 20:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 888..932 78..34 108 71.1 Minus

BO13113.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:12 Download gff for BO13113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15251-PA 1..627 18..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:51 Download gff for BO13113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15251-PA 1..627 18..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:23:58 Download gff for BO13113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..782 19..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:19 Download gff for BO13113.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..782 19..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:19 Download gff for BO13113.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9967577..9967951 19..393 100 <- Plus
X 9968019..9968108 394..483 100 <- Plus
X 9970353..9970511 484..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:23:58 Download gff for BO13113.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9861610..9861984 19..393 100 <- Plus
arm_X 9862052..9862141 394..483 100 <- Plus
arm_X 9864386..9864544 484..642 99   Plus

BO13113.5prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-08

> BO13113.5prime
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCAC
CGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCG
GAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTC
TCGGGACCCATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGG
CGTGACGACACCAGCTCCCGATTCCGATGAGGCGGGCTACGCAAGCTTTC
TAGACC

BO13113.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15251-PA 627 CG15251-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 1134 CG43386-RD 257..880 17..640 3120 100 Plus
CG43386-RC 1036 CG43386-RC 159..782 17..640 3120 100 Plus
CG43386-RB 716 CG43386-RB 159..317 17..175 795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967577..9967951 640..266 1875 100 Minus
X 23542271 X 9970352..9970511 176..17 800 100 Minus
X 23542271 X 9968019..9968110 265..174 460 100 Minus
Blast to na_te.dros performed 2015-02-12 11:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 888..932 581..625 108 71.1 Plus

BO13113.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:12 Download gff for BO13113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15251-PA 1..627 17..641 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:52 Download gff for BO13113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15251-PA 1..627 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:34 Download gff for BO13113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..782 17..640 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:09 Download gff for BO13113.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..782 17..640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:09 Download gff for BO13113.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9967577..9967951 266..640 100 <- Minus
X 9968019..9968108 176..265 100 <- Minus
X 9970353..9970511 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:34 Download gff for BO13113.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9861610..9861984 266..640 100 <- Minus
arm_X 9862052..9862141 176..265 100 <- Minus
arm_X 9864386..9864544 17..175 100   Minus

BO13113.complete Sequence

658 bp assembled on 2006-10-11

GenBank Submission: FJ632678

> BO13113.complete
GAAGTTATCAGTCGACATGCAGTTCACCAGGAGCCGTTTATTACTATCGA
TGGCCGTGCTATCGGCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCT
CAGCAAACAAATTCCGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCC
CGACTTGAATCCTATCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCA
ACAAAAGAAAACTGCCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTC
GGTTTTGTGTTTGGCAAAATCGACAACTTCCTGGATACAAAGACGCGGGT
GATCGAGCAGCTGGACCGATCGAATATCGAAAAGAACAAGCAGTGGGACA
TCAAGTCGCCGGTGCCCATCAAGGACTTCCAGACTCTGATTACCGCCGTG
GTGTCGCCAAAGATCCGTTCGATTGGCAACATTGCTAATGACCTGACCAC
CGGTGTGCTGACCACGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCG
GAAATGCGAACGCCGGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTC
TCGGGACCCATCCTGCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGG
CGTGACGACACCAGCTCCCGATTCCGATGAGGCGGGCTACGCAAGCTTTC
TAGACCAT

BO13113.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 627 CG43386-PD 1..624 17..640 3120 100 Plus
CG43386-RC 627 CG43386-PC 1..624 17..640 3120 100 Plus
CG43386-RB 462 CG43386-PB 1..159 17..175 795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-RD 1134 CG43386-RD 257..880 17..640 3120 100 Plus
CG43386-RC 1036 CG43386-RC 159..782 17..640 3120 100 Plus
CG43386-RB 716 CG43386-RB 159..317 17..175 795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967577..9967951 640..266 1875 100 Minus
X 23542271 X 9970352..9970511 176..17 800 100 Minus
X 23542271 X 9968019..9968110 265..174 460 100 Minus
Blast to na_te.dros performed 2014-11-27 14:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 888..932 581..625 108 71.1 Plus

BO13113.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:04 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..627 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:07 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 153..776 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:19 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..782 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:04 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 153..776 17..640 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:14 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 159..782 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:14 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
X 9967575..9967951 266..642 99 <- Minus
X 9968019..9968108 176..265 100 <- Minus
X 9970353..9970511 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:19 Download gff for BO13113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9861608..9861984 266..642 99 <- Minus
arm_X 9862052..9862141 176..265 100 <- Minus
arm_X 9864386..9864544 17..175 100   Minus

BO13113.pep Sequence

Translation from 16 to 658

> BO13113.pep
MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI
NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD
RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT
ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA
PDSDEAGYASFLDH

BO13113.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-PD 208 CG43386-PD 1..208 1..208 1039 100 Plus
CG43386-PC 208 CG15251-PA 1..208 1..208 1039 100 Plus
CG43386-PB 153 CG15250-PA 1..100 1..101 268 62.4 Plus