Clone Sequence Records
BO13114.3prime Sequence
652 bp (624 high quality bases) assembled on 2006-05-08
> BO13114.3prime
ATGGTCTAGAAAGCTTGCGACAGGACTGTCTGAAGTTATATCCTGTCTTT
CTGTCTGGGCCTTGATGGCAATGCCTTCCAGACTGTGACTCTGGCTCTGG
CCCTGATCCTGTTCCTGCCCCTGCCCCTGTTCCTCATCCTCGTCCTCTTC
CTCTCCCTCGTTATCTGTCTCGCCATCAACTTCCGCTTCCAATTCCTGTC
CCTCGATGTGACGAGCCGCCGGCTGGGACACGAACGATGTGGAGGAAGTG
GACAGCTGCGAAGGCAATGTGGCCGCTGTCGAGGATGAGACGAAACTGGG
CATACTGACCGGGCACATGCAGGGAACAAATTGAATGCGACTGTTACTGG
AGACCCCTTGCTCCGATACTACGGTCTGCTGCTGCGGCTGATAGTTGAAG
TAATCCGGATATGGATACTGAGGCCTGGCGTTATAGAGGTTGTTTACCCG
GCGATTGTACGCGGGATATTCACCAAAGCGCAGCAAGCTAGAAGTGGGTC
CTTCGGAGAAACTACTACTGGTGGACTGGGGCGGAGGTGGTACTGGTGGT
GGGGTTGTACTGGTGGTAGTAGTACTAGGTCTTGTTGTTGGTGCCGGAGT
GGTGGTTGTGGTGGTGGTAGTTGTTGTCGTTGGTGTGGGAGTGGTTGTGG
TT
BO13114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-PA | 969 | CG13362-RA | 340..966 | 645..19 | 3085 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 1686 | CG13362-RA | 465..1098 | 652..19 | 3110 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 749829..750462 | 19..652 | 3110 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:37:31 has no hits.
BO13114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:13 Download gff for
BO13114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-PA | 333..969 | 18..652 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:53 Download gff for
BO13114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-PA | 333..969 | 18..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:49 Download gff for
BO13114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 465..1103 | 11..652 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:09 Download gff for
BO13114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 465..1103 | 11..652 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:09 Download gff for
BO13114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 749824..750462 | 11..652 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:49 Download gff for
BO13114.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 643857..644495 | 11..652 | 98 | | Plus |
BO13114.5prime Sequence
760 bp (692 high quality bases) assembled on 2006-05-08
> BO13114.5prime
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGCCCGGTCAATATG
CCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCCTTCGCAGCTGTC
CACTTCCTCC
BO13114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-PA | 969 | CG13362-RA | 1..744 | 17..760 | 3695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 1686 | CG13362-RA | 133..876 | 17..760 | 3705 | 99.9 | Plus |
CG5254-RB | 1362 | CG5254-RB | 1..427 | 464..34 | 1940 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 750051..750714 | 760..97 | 3305 | 99.8 | Minus |
X | 23542271 | X | 750772..750835 | 97..34 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:31:37 has no hits.
BO13114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:14 Download gff for
BO13114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-PA | 1..744 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:55 Download gff for
BO13114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-PA | 1..744 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:51 Download gff for
BO13114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 126..876 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:33 Download gff for
BO13114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 126..876 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:33 Download gff for
BO13114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 750773..750834 | 35..96 | 100 | <- | Minus |
X | 750051..750714 | 97..760 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:51 Download gff for
BO13114.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 644084..644747 | 97..760 | 99 | <- | Minus |
arm_X | 644806..644867 | 35..96 | 100 | <- | Minus |
BO13114.complete Sequence
1000 bp assembled on 2006-10-11
GenBank Submission: FJ632679
> BO13114.complete
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGCCCGGTCAGTATG
CCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCCTTCGCAGCTGTC
CACTTCCTCCACATCGTTCGTGTCCCAGCCGGCGGCTCGTCACATCGAGG
GACAGGAATTGGAAGCGGAAGTTGATGGCGAGACAGATAACGAGGGAGAG
GAAGAGGACGAGGATGAGGAACAGGGGCAGGGGCAGGAACAGGATCAGGG
CCAGAGCCAGAGTCACAGTCTGGAAGGCATTGCCATCAAGGCCCAGACAG
AAAGACAGGATATAACTTCAGACAGTCCTGTCGCAAGCTTTCTAGACCAT
BO13114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 969 | CG13362-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-RA | 1686 | CG13362-RA | 133..1098 | 17..982 | 4830 | 100 | Plus |
CG5254-RB | 1362 | CG5254-RB | 1..427 | 464..34 | 1890 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 749829..750714 | 982..97 | 4430 | 100 | Minus |
X | 23542271 | X | 750772..750835 | 97..34 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:40 has no hits.
BO13114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:00 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 1..969 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:38 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 122..1099 | 9..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:03 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 133..1098 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:00 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 122..1099 | 9..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:41 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13362-RA | 133..1098 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:41 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 749827..750714 | 97..984 | 99 | <- | Minus |
X | 750773..750834 | 35..96 | 100 | <- | Minus |
X | 751152..751169 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:03 Download gff for
BO13114.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 643860..644747 | 97..984 | 99 | <- | Minus |
arm_X | 644806..644867 | 35..96 | 100 | <- | Minus |
arm_X | 645185..645202 | 17..34 | 100 | | Minus |
BO13114.pep Sequence
Translation from 16 to 1000
> BO13114.pep
MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT
YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT
DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP
PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP
QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS
FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH
SLEGIAIKAQTERQDITSDSPVASFLDH
BO13114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13362-PA | 322 | CG13362-PA | 1..322 | 1..322 | 1684 | 100 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 327..489 | 90..250 | 159 | 30.7 | Plus |
CG43798-PA | 213 | CG43798-PA | 128..197 | 105..166 | 152 | 48.6 | Plus |