Clone BO13114 Report

Search the DGRC for BO13114

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG13362-RA
Protein status:BO13114.pep: validated full length
Sequenced Size:1000

Clone Sequence Records

BO13114.3prime Sequence

652 bp (624 high quality bases) assembled on 2006-05-08

> BO13114.3prime
ATGGTCTAGAAAGCTTGCGACAGGACTGTCTGAAGTTATATCCTGTCTTT
CTGTCTGGGCCTTGATGGCAATGCCTTCCAGACTGTGACTCTGGCTCTGG
CCCTGATCCTGTTCCTGCCCCTGCCCCTGTTCCTCATCCTCGTCCTCTTC
CTCTCCCTCGTTATCTGTCTCGCCATCAACTTCCGCTTCCAATTCCTGTC
CCTCGATGTGACGAGCCGCCGGCTGGGACACGAACGATGTGGAGGAAGTG
GACAGCTGCGAAGGCAATGTGGCCGCTGTCGAGGATGAGACGAAACTGGG
CATACTGACCGGGCACATGCAGGGAACAAATTGAATGCGACTGTTACTGG
AGACCCCTTGCTCCGATACTACGGTCTGCTGCTGCGGCTGATAGTTGAAG
TAATCCGGATATGGATACTGAGGCCTGGCGTTATAGAGGTTGTTTACCCG
GCGATTGTACGCGGGATATTCACCAAAGCGCAGCAAGCTAGAAGTGGGTC
CTTCGGAGAAACTACTACTGGTGGACTGGGGCGGAGGTGGTACTGGTGGT
GGGGTTGTACTGGTGGTAGTAGTACTAGGTCTTGTTGTTGGTGCCGGAGT
GGTGGTTGTGGTGGTGGTAGTTGTTGTCGTTGGTGTGGGAGTGGTTGTGG
TT

BO13114.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 969 CG13362-RA 340..966 645..19 3085 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1686 CG13362-RA 465..1098 652..19 3110 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 749829..750462 19..652 3110 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 18:37:31 has no hits.

BO13114.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:13 Download gff for BO13114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-PA 333..969 18..652 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:53 Download gff for BO13114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-PA 333..969 18..652 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:49 Download gff for BO13114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 465..1103 11..652 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:09 Download gff for BO13114.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 465..1103 11..652 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:09 Download gff for BO13114.3prime
Subject Subject Range Query Range Percent Splice Strand
X 749824..750462 11..652 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:49 Download gff for BO13114.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 643857..644495 11..652 98   Plus

BO13114.5prime Sequence

760 bp (692 high quality bases) assembled on 2006-05-08

> BO13114.5prime
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGCCCGGTCAATATG
CCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCCTTCGCAGCTGTC
CACTTCCTCC

BO13114.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 969 CG13362-RA 1..744 17..760 3695 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1686 CG13362-RA 133..876 17..760 3705 99.9 Plus
CG5254-RB 1362 CG5254-RB 1..427 464..34 1940 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 750051..750714 760..97 3305 99.8 Minus
X 23542271 X 750772..750835 97..34 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:31:37 has no hits.

BO13114.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:14 Download gff for BO13114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-PA 1..744 17..760 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:55 Download gff for BO13114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-PA 1..744 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:51 Download gff for BO13114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 126..876 9..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:33 Download gff for BO13114.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 126..876 9..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:33 Download gff for BO13114.5prime
Subject Subject Range Query Range Percent Splice Strand
X 750773..750834 35..96 100 <- Minus
X 750051..750714 97..760 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:51 Download gff for BO13114.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 644084..644747 97..760 99 <- Minus
arm_X 644806..644867 35..96 100 <- Minus

BO13114.complete Sequence

1000 bp assembled on 2006-10-11

GenBank Submission: FJ632679

> BO13114.complete
GAAGTTATCAGTCGACATGAGGCTAAGTTTTGTGATTACTCTTATCCTGA
CAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAGACAACAACGGAA
ACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAATTCCGCTCACCTA
TTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGTTTTTTGGATTTG
GAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTACGATCCATATGGG
ATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGTTTCCAGGCAAGA
AGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTAGCTCTCGGACAA
CCAGCACCACTCCCGCGCCAACGACAACAACTACCACCACCACAACCACC
ACTCCGGCACCAACAACAAGACCTAGTACTACTACCACCAGTACAACCCC
ACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTAGTTTCTCCGAAG
GACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCCGCGTACAATCGC
CGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCCATATCCGGATTA
CTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGGAGCAAGGGGTCT
CCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGCCCGGTCAGTATG
CCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCCTTCGCAGCTGTC
CACTTCCTCCACATCGTTCGTGTCCCAGCCGGCGGCTCGTCACATCGAGG
GACAGGAATTGGAAGCGGAAGTTGATGGCGAGACAGATAACGAGGGAGAG
GAAGAGGACGAGGATGAGGAACAGGGGCAGGGGCAGGAACAGGATCAGGG
CCAGAGCCAGAGTCACAGTCTGGAAGGCATTGCCATCAAGGCCCAGACAG
AAAGACAGGATATAACTTCAGACAGTCCTGTCGCAAGCTTTCTAGACCAT

BO13114.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 969 CG13362-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1686 CG13362-RA 133..1098 17..982 4830 100 Plus
CG5254-RB 1362 CG5254-RB 1..427 464..34 1890 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 749829..750714 982..97 4430 100 Minus
X 23542271 X 750772..750835 97..34 320 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:12:40 has no hits.

BO13114.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:00 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 17..983 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:38 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 122..1099 9..990 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:03 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 133..1098 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:00 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 122..1099 9..990 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:41 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 133..1098 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:41 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
X 749827..750714 97..984 99 <- Minus
X 750773..750834 35..96 100 <- Minus
X 751152..751169 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:03 Download gff for BO13114.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 643860..644747 97..984 99 <- Minus
arm_X 644806..644867 35..96 100 <- Minus
arm_X 645185..645202 17..34 100   Minus

BO13114.pep Sequence

Translation from 16 to 1000

> BO13114.pep
MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT
YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT
DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP
PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP
QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS
FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH
SLEGIAIKAQTERQDITSDSPVASFLDH

BO13114.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 322 CG13362-PA 1..322 1..322 1684 100 Plus
Sgs1-PA 1286 CG3047-PA 327..489 90..250 159 30.7 Plus
CG43798-PA 213 CG43798-PA 128..197 105..166 152 48.6 Plus