Clone BO13116 Report

Search the DGRC for BO13116

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL40-RA
Protein status:BO13116.pep: validated full length
Sequenced Size:622

Clone Sequence Records

BO13116.3prime Sequence

620 bp (590 high quality bases) assembled on 2006-05-08

> BO13116.3prime
ATGGTCTAGAAAGCTTGCTTTGACCTCCCACTTCATGGATTGGTGCAGGT
AGTCGCCATCGGGACTGACGTAATCCTTAATGGGGGGCGTGGCAACGGGT
CCTTTGACGGCGACGGGCAGCAGCTGGGGATCGATATCGATGGCCGCCTG
GTAGAGCTCCTCGGACTCGCGCCGAAGTTCCGCCAGCGCCTTGTTTTGCG
CCTGGACCAGCCGGTCGATGATCTGAAAGTCTGCTACGCGCTCGTCGTGC
TTGTAGTGCGCCCACTGCTTCTTGAGGAGAGCACGTTCCTCCAACTGGTC
GATGGTCAGTGGAGCTAGCTTCCGCTGCCGTTTGTCCTTTTCGTCGATGA
GCTCCAGTGGAACCTCCAGTTCATCCACGGGCTTCAGCTGACGGGCATTC
TTCTCCAGCCGGCGAATCTGCTTTTCGATCTTCTTCTTCTTGCGATCCTC
GCGCTGCTTGACAATCTGCGGATCCAGTTTCTTCTTTTTCTTCAGGGGCT
CCGCACAAAGAACTGGTGTCGTGTGGAGGCAACGTGCAAAGGCGGCACCG
GCGACGCCGCCACTTCTCTGCAGACTCAATCTGGCAAAGGCGCCCAGCAG
CGACATGTCGACTGATAACT

BO13116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5242-PA 591 mRpL40-RA 1..588 606..19 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 716 CG5242-RA 74..661 606..19 2940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11408386..11408701 334..19 1580 100 Minus
3R 32079331 3R 11408078..11408326 583..335 1245 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:29:18 has no hits.

BO13116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:17 Download gff for BO13116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5242-PA 1..591 16..606 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:59 Download gff for BO13116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5242-PA 1..591 16..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:56 Download gff for BO13116.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..667 13..606 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:55 Download gff for BO13116.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..667 13..606 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:55 Download gff for BO13116.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11408386..11408707 13..334 99   Minus
3R 11407991..11408016 581..606 100 -> Minus
3R 11408081..11408326 335..580 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:56 Download gff for BO13116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7233713..7233738 581..606 100 -> Minus
arm_3R 7233803..7234048 335..580 100 -> Minus
arm_3R 7234108..7234429 13..334 99   Minus

BO13116.5prime Sequence

620 bp (619 high quality bases) assembled on 2006-05-08

> BO13116.5prime
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAAGCAAGCTTTCTAGACC

BO13116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5242-PA 591 mRpL40-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 716 CG5242-RA 74..661 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11408386..11408701 289..604 1580 100 Plus
3R 32079331 3R 11408078..11408326 40..288 1245 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:27:18 has no hits.

BO13116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:18 Download gff for BO13116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5242-PA 1..591 17..607 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:01 Download gff for BO13116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5242-PA 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:11 Download gff for BO13116.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..667 17..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:43 Download gff for BO13116.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..667 17..610 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:43 Download gff for BO13116.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11407991..11408016 17..42 100 -> Plus
3R 11408081..11408326 43..288 100 -> Plus
3R 11408386..11408707 289..610 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:11 Download gff for BO13116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7233713..7233738 17..42 100 -> Plus
arm_3R 7233803..7234048 43..288 100 -> Plus
arm_3R 7234108..7234429 289..610 99   Plus

BO13116.complete Sequence

622 bp assembled on 2006-10-11

GenBank Submission: FJ632680

> BO13116.complete
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAAGCAAGCTTTCTAGACCAT

BO13116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 591 CG5242-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-RA 716 CG5242-RA 74..661 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11408386..11408701 289..604 1580 100 Plus
3R 32079331 3R 11408078..11408326 40..288 1245 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:06:57 has no hits.

BO13116.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:49 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:18 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 69..662 17..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:01 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..661 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:49 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 69..662 17..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:17 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL40-RA 74..661 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:17 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11407991..11408016 17..42 100 -> Plus
3R 11408081..11408326 43..288 100 -> Plus
3R 11408386..11408701 289..606 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:01 Download gff for BO13116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7233713..7233738 17..42 100 -> Plus
arm_3R 7233803..7234048 43..288 100 -> Plus
arm_3R 7234108..7234423 289..606 99   Plus

BO13116.pep Sequence

Translation from 16 to 622

> BO13116.pep
MSLLGAFARLSLQRSGGVAGAAFARCLHTTPVLCAEPLKKKKKLDPQIVK
QREDRKKKKIEKQIRRLEKNARQLKPVDELEVPLELIDEKDKRQRKLAPL
TIDQLEERALLKKQWAHYKHDERVADFQIIDRLVQAQNKALAELRRESEE
LYQAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWEVKASFL
DH

BO13116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL40-PA 196 CG5242-PA 1..196 1..196 997 100 Plus