Clone Sequence Records
BO13116.3prime Sequence
620 bp (590 high quality bases) assembled on 2006-05-08
> BO13116.3prime
ATGGTCTAGAAAGCTTGCTTTGACCTCCCACTTCATGGATTGGTGCAGGT
AGTCGCCATCGGGACTGACGTAATCCTTAATGGGGGGCGTGGCAACGGGT
CCTTTGACGGCGACGGGCAGCAGCTGGGGATCGATATCGATGGCCGCCTG
GTAGAGCTCCTCGGACTCGCGCCGAAGTTCCGCCAGCGCCTTGTTTTGCG
CCTGGACCAGCCGGTCGATGATCTGAAAGTCTGCTACGCGCTCGTCGTGC
TTGTAGTGCGCCCACTGCTTCTTGAGGAGAGCACGTTCCTCCAACTGGTC
GATGGTCAGTGGAGCTAGCTTCCGCTGCCGTTTGTCCTTTTCGTCGATGA
GCTCCAGTGGAACCTCCAGTTCATCCACGGGCTTCAGCTGACGGGCATTC
TTCTCCAGCCGGCGAATCTGCTTTTCGATCTTCTTCTTCTTGCGATCCTC
GCGCTGCTTGACAATCTGCGGATCCAGTTTCTTCTTTTTCTTCAGGGGCT
CCGCACAAAGAACTGGTGTCGTGTGGAGGCAACGTGCAAAGGCGGCACCG
GCGACGCCGCCACTTCTCTGCAGACTCAATCTGGCAAAGGCGCCCAGCAG
CGACATGTCGACTGATAACT
BO13116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5242-PA | 591 | mRpL40-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 716 | CG5242-RA | 74..661 | 606..19 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11408386..11408701 | 334..19 | 1580 | 100 | Minus |
3R | 32079331 | 3R | 11408078..11408326 | 583..335 | 1245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:29:18 has no hits.
BO13116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:17 Download gff for
BO13116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5242-PA | 1..591 | 16..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:37:59 Download gff for
BO13116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5242-PA | 1..591 | 16..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:56 Download gff for
BO13116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..667 | 13..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:55 Download gff for
BO13116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..667 | 13..606 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:55 Download gff for
BO13116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11408386..11408707 | 13..334 | 99 | | Minus |
3R | 11407991..11408016 | 581..606 | 100 | -> | Minus |
3R | 11408081..11408326 | 335..580 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:56 Download gff for
BO13116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7233713..7233738 | 581..606 | 100 | -> | Minus |
arm_3R | 7233803..7234048 | 335..580 | 100 | -> | Minus |
arm_3R | 7234108..7234429 | 13..334 | 99 | | Minus |
BO13116.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-08
> BO13116.5prime
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAAGCAAGCTTTCTAGACC
BO13116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5242-PA | 591 | mRpL40-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 716 | CG5242-RA | 74..661 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11408386..11408701 | 289..604 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 11408078..11408326 | 40..288 | 1245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:27:18 has no hits.
BO13116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:18 Download gff for
BO13116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5242-PA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:01 Download gff for
BO13116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5242-PA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:11 Download gff for
BO13116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..667 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:43 Download gff for
BO13116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..667 | 17..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:43 Download gff for
BO13116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11407991..11408016 | 17..42 | 100 | -> | Plus |
3R | 11408081..11408326 | 43..288 | 100 | -> | Plus |
3R | 11408386..11408707 | 289..610 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:11 Download gff for
BO13116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7233713..7233738 | 17..42 | 100 | -> | Plus |
arm_3R | 7233803..7234048 | 43..288 | 100 | -> | Plus |
arm_3R | 7234108..7234429 | 289..610 | 99 | | Plus |
BO13116.complete Sequence
622 bp assembled on 2006-10-11
GenBank Submission: FJ632680
> BO13116.complete
GAAGTTATCAGTCGACATGTCGCTGCTGGGCGCCTTTGCCAGATTGAGTC
TGCAGAGAAGTGGCGGCGTCGCCGGTGCCGCCTTTGCACGTTGCCTCCAC
ACGACACCAGTTCTTTGTGCGGAGCCCCTGAAGAAAAAGAAGAAACTGGA
TCCGCAGATTGTCAAGCAGCGCGAGGATCGCAAGAAGAAGAAGATCGAAA
AGCAGATTCGCCGGCTGGAGAAGAATGCCCGTCAGCTGAAGCCCGTGGAT
GAACTGGAGGTTCCACTGGAGCTCATCGACGAAAAGGACAAACGGCAGCG
GAAGCTAGCTCCACTGACCATCGACCAGTTGGAGGAACGTGCTCTCCTCA
AGAAGCAGTGGGCGCACTACAAGCACGACGAGCGCGTAGCAGACTTTCAG
ATCATCGACCGGCTGGTCCAGGCGCAAAACAAGGCGCTGGCGGAACTTCG
GCGCGAGTCCGAGGAGCTCTACCAGGCGGCCATCGATATCGATCCCCAGC
TGCTGCCCGTCGCCGTCAAAGGACCCGTTGCCACGCCCCCCATTAAGGAT
TACGTCAGTCCCGATGGCGACTACCTGCACCAATCCATGAAGTGGGAGGT
CAAAGCAAGCTTTCTAGACCAT
BO13116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 591 | CG5242-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-RA | 716 | CG5242-RA | 74..661 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11408386..11408701 | 289..604 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 11408078..11408326 | 40..288 | 1245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:06:57 has no hits.
BO13116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:49 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:18 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 69..662 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:01 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..661 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:49 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 69..662 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:17 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL40-RA | 74..661 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:17 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11407991..11408016 | 17..42 | 100 | -> | Plus |
3R | 11408081..11408326 | 43..288 | 100 | -> | Plus |
3R | 11408386..11408701 | 289..606 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:01 Download gff for
BO13116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7233713..7233738 | 17..42 | 100 | -> | Plus |
arm_3R | 7233803..7234048 | 43..288 | 100 | -> | Plus |
arm_3R | 7234108..7234423 | 289..606 | 99 | | Plus |
BO13116.pep Sequence
Translation from 16 to 622
> BO13116.pep
MSLLGAFARLSLQRSGGVAGAAFARCLHTTPVLCAEPLKKKKKLDPQIVK
QREDRKKKKIEKQIRRLEKNARQLKPVDELEVPLELIDEKDKRQRKLAPL
TIDQLEERALLKKQWAHYKHDERVADFQIIDRLVQAQNKALAELRRESEE
LYQAAIDIDPQLLPVAVKGPVATPPIKDYVSPDGDYLHQSMKWEVKASFL
DH
BO13116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL40-PA | 196 | CG5242-PA | 1..196 | 1..196 | 997 | 100 | Plus |