Clone Sequence Records
BO13117.3prime Sequence
582 bp (515 high quality bases) assembled on 2006-05-08
> BO13117.3prime
ATGGTCTAGAAAGCTTGCCCAACTGCGACGCAGGATTAGACGCTGAGGAA
CGGGCCTCTGGGAACGCCGTCCTTGCGGAAATCGCTGGTAGAGTCGGGCG
GACTGGACGGACTGTGGCTGGTCAAGACTGCTAGCTACAACGATCACAGT
GCCATCCTCAGCAACATCCAGCTGCGGTTCATCCTCCTCGGCGTCCTCAT
CAGCGGGCTGCAGCTTGGCACCGTCAACCGATGCTTCCTCAGTCTCTGGA
ATATCATCAGTCTCGATGGGATTCTCTGGTAGCGGCTCAGCCTCGGGAGC
AATAGCCGGCACGGAGTCGGTCTCTGGAGGTCCATAAGTGTTATCTGGTG
GCCCGTATGTGTTGTCCGGAGGTCCATAGGTGTTATCAGGCGGCAGATAA
GTGTTCTCCGGCTTGACAGTCGAACTGGGTAAATCGAATGGAACACTCGG
GGTGATGCCCGCCTCCGGATATCCGGTGGGCGAAGGACTGGGTATAGCCT
CCCCTTGGCGCGCCAAGAACCTCCGGCGGATCGGCTCCGCGGAGCTCAGC
GCCAACAGGCTCAGGAACAGAATAGCCAATTG
BO13117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-PA | 588 | CG14569-RA | 38..585 | 566..19 | 2690 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-RA | 826 | CG14569-RA | 52..614 | 582..19 | 2735 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21730937..21731494 | 19..576 | 2730 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:56 has no hits.
BO13117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:19 Download gff for
BO13117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-PA | 23..588 | 18..582 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:02 Download gff for
BO13117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-PA | 23..588 | 18..582 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:54 Download gff for
BO13117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 52..622 | 10..582 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:14 Download gff for
BO13117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 52..622 | 10..582 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:14 Download gff for
BO13117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21730929..21731499 | 10..582 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:54 Download gff for
BO13117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21724029..21724599 | 10..582 | 98 | | Plus |
BO13117.5prime Sequence
594 bp (459 high quality bases) assembled on 2006-05-08
> BO13117.5prime
GAAGTTATCAGTCGACATGTTTAAACCGACTGGCGCACCAATTGCTATTC
TTGTCCTGAGCCTGTTGGCGCTGAGCTCCGCGGAGCCGATCCGCCGGAGG
TTCTTGGCGCGCCAAGTGGAGGCTATACCCAGTCCTTCGCCCACCGGATA
TCCGGAGGCGGGCATCACCCCGAGTGTTCCCTTCGATTTACCCAGTTCGA
CTGTCAAGCCGGAGAACACTTATCTGCCGCCTGATAACACCTATGGACCT
CCGGACAACACATACGGGCCACCAGATAACACTTATGGACCTCCAGAGAC
CGACTCCGTGCCGGCTATTGCTCCCGAGGCTGAGCCGCTACCAGAGAATC
CCATCGAGACTGATGATATTCCAGAGACTGAGGAAGCATCGGTTGACGGT
GCCAAGCTGCAGCCCGCTGATGAGGACGCCGAGGAGGATGAACCGCATCT
GGATGTTGCTGATGATGGCACTGTGATCGTTGTAGCTAGCAGTCTTGACC
AGCCACAGTCCGTCCAGTCCCGCCCGACTCTACCAGCGATTTCCGCAAGG
ACGGCGTTCCCATAGGCCCGTTCCTCACCGTCTAATCCTGCGTC
BO13117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-PA | 588 | CG14569-RA | 1..504 | 17..520 | 2470 | 99.6 | Plus |
| CG14569-PA | 588 | CG14569-RA | 503..577 | 520..594 | 325 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-RA | 826 | CG14569-RA | 30..606 | 17..594 | 2805 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21730945..21731521 | 594..17 | 2780 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:51:22 has no hits.
BO13117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:21 Download gff for
BO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-PA | 1..577 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:04 Download gff for
BO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-PA | 1..577 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:35 Download gff for
BO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 30..606 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:56 Download gff for
BO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 30..606 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:56 Download gff for
BO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21730945..21731519 | 19..594 | 99 | -> | Minus |
| 3L | 21868224..21868241 | 1..18 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:35 Download gff for
BO13117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21724045..21724619 | 19..594 | 99 | -> | Minus |
| arm_3L | 21861324..21861341 | 1..18 | 94 | | Minus |
BO13117.complete Sequence
619 bp assembled on 2006-10-11
GenBank Submission: FJ632681
> BO13117.complete
GAAGTTATCAGTCGACATGTTTAAACCGACTGGCGCACCAATTGCTATTC
TTGTCCTGAGCCTGTTGGCGCTGAGCTCCGCGGAGCCGATCCGCCGGAGG
TTCTTGGCGCGCCAAGTGGAGGCTATACCCAGTCCTTCGCCCACCGGATA
TCCGGAGGCGGGCATCACCCCGAGTGTTCCCTTCGATTTACCCAGTTCGA
CTGTCAAGCCGGAGAACACTTATCTGCCGCCTGATAACACCTATGGACCT
CCGGACAACACATACGGGCCACCAGATAACACTTATGGACCTCCAGAGAC
CGACTCCGTGCCGGCTATTGCTCCCGAGGCTGAGCCGCTACCAGAGAATC
CCATCGAGACTGATGATATTCCAGAGACTGAGGAAGCATCGGTTGACGGT
GCCAAGCTGCAGCCCGCTGATGAGGACGCCGAGGAGGATGAACCGCAGCT
GGATGTTGCTGAGGATGGCACTGTGATCGTTGTAGCTAGCAGTCTTGACC
AGCCACAGTCCGTCCAGTCCGCCCGACTCTACCAGCGATTTCCGCAAGGA
CGGCGTTCCCAGAGGCCCGTTCCTCAGCGTCTAATCCTGCGTCGCAGTTG
GGCAAGCTTTCTAGACCAT
BO13117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-RA | 588 | CG14569-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-RA | 826 | CG14569-RA | 30..614 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21730937..21731521 | 601..17 | 2925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:07:34 has no hits.
BO13117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:50 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:42 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 27..619 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:35 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 36..614 | 23..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:51 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 27..619 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:18 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14569-RA | 36..614 | 23..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:18 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21730935..21731515 | 23..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:35 Download gff for
BO13117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21724035..21724615 | 23..603 | 99 | | Minus |
BO13117.pep Sequence
Translation from 16 to 619
> BO13117.pep
MFKPTGAPIAILVLSLLALSSAEPIRRRFLARQVEAIPSPSPTGYPEAGI
TPSVPFDLPSSTVKPENTYLPPDNTYGPPDNTYGPPDNTYGPPETDSVPA
IAPEAEPLPENPIETDDIPETEEASVDGAKLQPADEDAEEDEPQLDVAED
GTVIVVASSLDQPQSVQSARLYQRFPQGRRSQRPVPQRLILRRSWASFLD
H
BO13117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14569-PA | 195 | CG14569-PA | 1..195 | 1..195 | 1017 | 100 | Plus |
| CG14568-PA | 171 | CG14568-PA | 10..139 | 11..114 | 217 | 42.5 | Plus |
| CG14570-PA | 228 | CG14570-PA | 5..127 | 4..111 | 183 | 36.1 | Plus |
