Clone Sequence Records
BO13119.3prime Sequence
603 bp (561 high quality bases) assembled on 2006-05-08
> BO13119.3prime
ATGGTCTAGAAAGCTTGCATGAGACTGTGGATCACACTGTAATAATCGTA
CTATTGATGGATCACTTTTGGCTCCTTCTATGAACTCTTCCAAGCTTAAT
TTCCCATCCTTGTTTCGATCCATTTGACGAAAAATCTTGTCGGTTCGTTT
CTCAGGAGTACTCTCGTCCTCTGGCATTTTCATCACCGAGCCGACCATTT
TATATATTGCTGTAACAATTTCTAGCATTTCCTGCCGCGATATGTATCCG
TTCCCATCAAGATCGTACATTGAGAATGCCCATTTGAGTTTCTGCTCGAG
TTTGCCCCGCGATGTGACACTTAGTGCACACAAGAACTCTCTAAAGTCTA
TAGTGCCATCGCCGTTGGCGTCGAATGTCCGGAAGACATGCTCTGCAAAC
TTGCTAGCGTCACCATATGGGAAAAAGTTCCCATAAATCTTTTTAAACTC
TTCTACTGATAAATGCCCACTAGGGCAGTCCTTAAGAAAGCCTTTATACC
ATTCTTGAATCTCAGCGTCTGTGAACTCTGTGTTTTGCTTGAGATCCTCC
AAAACTTCTGGTTTTAGTTTACTATTTTGCTTTCCCATGTCGACTTGATA
ACT
BO13119.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7641-PA | 573 | Nca-RA | 1..570 | 588..19 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 899 | CG7641-RA | 245..814 | 588..19 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19997029..19997220 | 401..210 | 960 | 100 | Minus |
3L | 28110227 | 3L | 19997292..19997483 | 210..19 | 960 | 100 | Minus |
3L | 28110227 | 3L | 19996848..19996968 | 520..400 | 605 | 100 | Minus |
3L | 28110227 | 3L | 19996711..19996780 | 588..519 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:48:21 has no hits.
BO13119.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:24 Download gff for
BO13119.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-PA | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:08 Download gff for
BO13119.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7641-PA | 1..573 | 15..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:34 Download gff for
BO13119.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 240..820 | 11..597 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:23:59 Download gff for
BO13119.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 240..820 | 11..597 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:23:59 Download gff for
BO13119.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19996706..19996780 | 519..597 | 94 | -> | Minus |
3L | 19996850..19996968 | 400..518 | 100 | -> | Minus |
3L | 19997031..19997219 | 211..399 | 100 | -> | Minus |
3L | 19997292..19997489 | 11..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:34 Download gff for
BO13119.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19989806..19989880 | 519..597 | 94 | -> | Minus |
arm_3L | 19989950..19990068 | 400..518 | 100 | -> | Minus |
arm_3L | 19990131..19990319 | 211..399 | 100 | -> | Minus |
arm_3L | 19990392..19990589 | 11..210 | 98 | | Minus |
BO13119.5prime Sequence
607 bp (475 high quality bases) assembled on 2006-05-08
> BO13119.5prime
GAAGTTATCAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAG
TTTTGGAGGATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAA
GAATGGTATAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGT
AGAAGAGTTTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTA
GCAAGTTTGCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGC
ACTATAGACTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGG
CATACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATG
GGAACGGATACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATA
TATAAAATGGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCC
TGAGAAACGAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATG
GGAAATTAAGCTTGGAAGAGTTCATAGAAGGAGCCAAAAAGTGATCCTTC
AATAGTACGATTATTACAGTGTGATCCACAGTCTCATGCAAGCTTTCTAG
ACCATTC
BO13119.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7641-PA | 573 | Nca-RA | 1..523 | 17..539 | 2590 | 99.8 | Plus |
CG7641-PA | 573 | Nca-RA | 520..570 | 537..587 | 230 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 899 | CG7641-RA | 245..814 | 17..587 | 2800 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19997029..19997220 | 204..395 | 945 | 99.5 | Plus |
3L | 28110227 | 3L | 19997292..19997483 | 395..587 | 900 | 99 | Plus |
3L | 28110227 | 3L | 19996848..19996968 | 85..205 | 605 | 100 | Plus |
3L | 28110227 | 3L | 19996711..19996780 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:52:08 has no hits.
BO13119.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:25 Download gff for
BO13119.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-PA | 1..573 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:09 Download gff for
BO13119.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7641-PA | 1..573 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:28 Download gff for
BO13119.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 236..820 | 8..595 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:23 Download gff for
BO13119.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 236..820 | 8..595 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:23 Download gff for
BO13119.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19997031..19997219 | 206..394 | 99 | -> | Plus |
3L | 19996702..19996780 | 8..86 | 95 | -> | Plus |
3L | 19996850..19996968 | 87..205 | 100 | -> | Plus |
3L | 19997292..19997489 | 395..595 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:28 Download gff for
BO13119.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19989802..19989880 | 8..86 | 95 | -> | Plus |
arm_3L | 19989950..19990068 | 87..205 | 100 | -> | Plus |
arm_3L | 19990131..19990319 | 206..394 | 99 | -> | Plus |
arm_3L | 19990392..19990589 | 395..595 | 97 | | Plus |
BO13119.complete Sequence
604 bp assembled on 2006-10-11
GenBank Submission: FJ632682
> BO13119.complete
GAAGTTATCAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAG
TTTTGGAGGATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAA
GAATGGTATAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGT
AGAAGAGTTTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTA
GCAAGTTTGCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGC
ACTATAGACTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGG
CAAACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATG
GGAACGGATACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATA
TATAAAATGGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCC
TGAGAAACGAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATG
GGAAATTAAGCTTGGAAGAGTTCATAGAAGGAGCCAAAAGTGATCCATCA
ATAGTACGATTATTACAGTGTGATCCACAGTCTCATGCAAGCTTTCTAGA
CCAT
BO13119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 573 | CG7641-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 899 | CG7641-RA | 245..814 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19997029..19997220 | 204..395 | 960 | 100 | Plus |
3L | 28110227 | 3L | 19997292..19997483 | 395..586 | 960 | 100 | Plus |
3L | 28110227 | 3L | 19996848..19996968 | 85..205 | 605 | 100 | Plus |
3L | 28110227 | 3L | 19996711..19996780 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:02:43 has no hits.
BO13119.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:56 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 1..573 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:47 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 200..784 | 8..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:34 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 245..814 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:56 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 200..784 | 8..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:12 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 245..814 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:12 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19996711..19996780 | 17..86 | 100 | -> | Plus |
3L | 19996850..19996968 | 87..205 | 100 | -> | Plus |
3L | 19997031..19997219 | 206..394 | 100 | -> | Plus |
3L | 19997292..19997483 | 395..588 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:34 Download gff for
BO13119.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19989811..19989880 | 17..86 | 100 | -> | Plus |
arm_3L | 19989950..19990068 | 87..205 | 100 | -> | Plus |
arm_3L | 19990131..19990319 | 206..394 | 100 | -> | Plus |
arm_3L | 19990392..19990583 | 395..588 | 98 | | Plus |
BO13119.pep Sequence
Translation from 16 to 604
> BO13119.pep
MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKK
IYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK
LKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTD
KIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSHASFLDH
BO13119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-PA | 190 | CG7641-PA | 1..190 | 1..190 | 1002 | 100 | Plus |
Frq1-PE | 187 | CG5744-PE | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PD | 187 | CG5744-PD | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PC | 187 | CG5744-PC | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PB | 187 | CG5744-PB | 1..182 | 1..183 | 582 | 60.1 | Plus |