Clone BO13119 Report

Search the DGRC for BO13119

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptNca-RA
Protein status:BO13119.pep: validated full length
Sequenced Size:604

Clone Sequence Records

BO13119.3prime Sequence

603 bp (561 high quality bases) assembled on 2006-05-08

> BO13119.3prime
ATGGTCTAGAAAGCTTGCATGAGACTGTGGATCACACTGTAATAATCGTA
CTATTGATGGATCACTTTTGGCTCCTTCTATGAACTCTTCCAAGCTTAAT
TTCCCATCCTTGTTTCGATCCATTTGACGAAAAATCTTGTCGGTTCGTTT
CTCAGGAGTACTCTCGTCCTCTGGCATTTTCATCACCGAGCCGACCATTT
TATATATTGCTGTAACAATTTCTAGCATTTCCTGCCGCGATATGTATCCG
TTCCCATCAAGATCGTACATTGAGAATGCCCATTTGAGTTTCTGCTCGAG
TTTGCCCCGCGATGTGACACTTAGTGCACACAAGAACTCTCTAAAGTCTA
TAGTGCCATCGCCGTTGGCGTCGAATGTCCGGAAGACATGCTCTGCAAAC
TTGCTAGCGTCACCATATGGGAAAAAGTTCCCATAAATCTTTTTAAACTC
TTCTACTGATAAATGCCCACTAGGGCAGTCCTTAAGAAAGCCTTTATACC
ATTCTTGAATCTCAGCGTCTGTGAACTCTGTGTTTTGCTTGAGATCCTCC
AAAACTTCTGGTTTTAGTTTACTATTTTGCTTTCCCATGTCGACTTGATA
ACT

BO13119.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7641-PA 573 Nca-RA 1..570 588..19 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 899 CG7641-RA 245..814 588..19 2850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19997029..19997220 401..210 960 100 Minus
3L 28110227 3L 19997292..19997483 210..19 960 100 Minus
3L 28110227 3L 19996848..19996968 520..400 605 100 Minus
3L 28110227 3L 19996711..19996780 588..519 350 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:48:21 has no hits.

BO13119.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:24 Download gff for BO13119.3prime
Subject Subject Range Query Range Percent Splice Strand
Nca-PA 1..573 15..588 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:08 Download gff for BO13119.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7641-PA 1..573 15..588 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:34 Download gff for BO13119.3prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 240..820 11..597 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:23:59 Download gff for BO13119.3prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 240..820 11..597 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:23:59 Download gff for BO13119.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19996706..19996780 519..597 94 -> Minus
3L 19996850..19996968 400..518 100 -> Minus
3L 19997031..19997219 211..399 100 -> Minus
3L 19997292..19997489 11..210 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:34 Download gff for BO13119.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19989806..19989880 519..597 94 -> Minus
arm_3L 19989950..19990068 400..518 100 -> Minus
arm_3L 19990131..19990319 211..399 100 -> Minus
arm_3L 19990392..19990589 11..210 98   Minus

BO13119.5prime Sequence

607 bp (475 high quality bases) assembled on 2006-05-08

> BO13119.5prime
GAAGTTATCAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAG
TTTTGGAGGATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAA
GAATGGTATAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGT
AGAAGAGTTTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTA
GCAAGTTTGCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGC
ACTATAGACTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGG
CATACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATG
GGAACGGATACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATA
TATAAAATGGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCC
TGAGAAACGAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATG
GGAAATTAAGCTTGGAAGAGTTCATAGAAGGAGCCAAAAAGTGATCCTTC
AATAGTACGATTATTACAGTGTGATCCACAGTCTCATGCAAGCTTTCTAG
ACCATTC

BO13119.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7641-PA 573 Nca-RA 1..523 17..539 2590 99.8 Plus
CG7641-PA 573 Nca-RA 520..570 537..587 230 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 899 CG7641-RA 245..814 17..587 2800 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19997029..19997220 204..395 945 99.5 Plus
3L 28110227 3L 19997292..19997483 395..587 900 99 Plus
3L 28110227 3L 19996848..19996968 85..205 605 100 Plus
3L 28110227 3L 19996711..19996780 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:52:08 has no hits.

BO13119.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:25 Download gff for BO13119.5prime
Subject Subject Range Query Range Percent Splice Strand
Nca-PA 1..573 17..591 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:09 Download gff for BO13119.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7641-PA 1..573 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:28 Download gff for BO13119.5prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 236..820 8..595 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:23 Download gff for BO13119.5prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 236..820 8..595 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:23 Download gff for BO13119.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19997031..19997219 206..394 99 -> Plus
3L 19996702..19996780 8..86 95 -> Plus
3L 19996850..19996968 87..205 100 -> Plus
3L 19997292..19997489 395..595 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:28 Download gff for BO13119.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19989802..19989880 8..86 95 -> Plus
arm_3L 19989950..19990068 87..205 100 -> Plus
arm_3L 19990131..19990319 206..394 99 -> Plus
arm_3L 19990392..19990589 395..595 97   Plus

BO13119.complete Sequence

604 bp assembled on 2006-10-11

GenBank Submission: FJ632682

> BO13119.complete
GAAGTTATCAGTCGACATGGGAAAGCAAAATAGTAAACTAAAACCAGAAG
TTTTGGAGGATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAA
GAATGGTATAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGT
AGAAGAGTTTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTA
GCAAGTTTGCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGC
ACTATAGACTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGG
CAAACTCGAGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATG
GGAACGGATACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATA
TATAAAATGGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCC
TGAGAAACGAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATG
GGAAATTAAGCTTGGAAGAGTTCATAGAAGGAGCCAAAAGTGATCCATCA
ATAGTACGATTATTACAGTGTGATCCACAGTCTCATGCAAGCTTTCTAGA
CCAT

BO13119.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 573 CG7641-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 899 CG7641-RA 245..814 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19997029..19997220 204..395 960 100 Plus
3L 28110227 3L 19997292..19997483 395..586 960 100 Plus
3L 28110227 3L 19996848..19996968 85..205 605 100 Plus
3L 28110227 3L 19996711..19996780 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:02:43 has no hits.

BO13119.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:56 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 1..573 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:47 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 200..784 8..594 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:34 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 245..814 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:56 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 200..784 8..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:12 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 245..814 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:12 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19996711..19996780 17..86 100 -> Plus
3L 19996850..19996968 87..205 100 -> Plus
3L 19997031..19997219 206..394 100 -> Plus
3L 19997292..19997483 395..588 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:34 Download gff for BO13119.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19989811..19989880 17..86 100 -> Plus
arm_3L 19989950..19990068 87..205 100 -> Plus
arm_3L 19990131..19990319 206..394 100 -> Plus
arm_3L 19990392..19990583 395..588 98   Plus

BO13119.pep Sequence

Translation from 16 to 604

> BO13119.pep
MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKK
IYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK
LKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTD
KIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSHASFLDH

BO13119.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-PA 190 CG7641-PA 1..190 1..190 1002 100 Plus
Frq1-PE 187 CG5744-PE 1..182 1..183 582 60.1 Plus
Frq1-PD 187 CG5744-PD 1..182 1..183 582 60.1 Plus
Frq1-PC 187 CG5744-PC 1..182 1..183 582 60.1 Plus
Frq1-PB 187 CG5744-PB 1..182 1..183 582 60.1 Plus