Clone BO13120 Report

Search the DGRC for BO13120

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptgeminin-RA
Protein status:BO13120.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO13120.3prime Sequence

609 bp (573 high quality bases) assembled on 2006-05-08

> BO13120.3prime
ATGGTCTAGAAAGCTTGCGGCGTTGACCTTGTCCTCGTCACCCGTAGTGT
CGTCCTCCTCCACCTCGCTGTTGTCCTCTTCGCAGATCTCCTTCAGGACC
TCCACCAAATTCTTGGCCTCGTCCAGTTCCTGGCGCATAGTGTCCATCTC
CTCCTCAAGCCCCTCGATGCGCTCGTGCAGATGGCGGTTTTCGGTGAGCG
AGTCCTCCAGCGCCAGTCGCCGCTGCTCGGCCAGCAGCTTGTAGTAGTTC
TCGCCGGGTTCGGCTGTGCTAGTGAGATCCTCTGCCGTGATGGGCTTGTC
AGCATTGCCAAGCGGAACGGCCTCAGCATCAGTCTGGGTATCCGCATCCT
TTGTGGAAATCGCGGGCGCCGTGTCCACGCATTTGCGCTTGCCGTACTTG
GGCGCGACTTGGACGCCGGCCTTCAGACGACTCAGCTGATCCACGATGGA
GGCGCGCCCTGAACCAGTGAGGTTCTCCTTATCGTTTACGTTGCCCTGCA
AGGGTTTCAGGGTCTGTCTCTGCTGCTTCAGGTGCTCCTTCTGCTCGGCC
TCTGTCTCGACTTGGATGTAGACCCTGCCAGCGCTCGAAGACATGTCGAC
TGATAACTT

BO13120.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3183-PA 579 geminin-RA 1..576 594..19 2855 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
geminin-RB 939 CG3183-RB 173..748 594..19 2865 99.8 Minus
geminin-RA 1061 CG3183-RA 295..870 594..19 2865 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6655654..6656229 19..594 2865 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 04:36:56 has no hits.

BO13120.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:26 Download gff for BO13120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3183-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:10 Download gff for BO13120.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3183-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:48:38 Download gff for BO13120.3prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..803 12..594 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:08 Download gff for BO13120.3prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 295..876 12..594 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:08 Download gff for BO13120.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6655648..6656229 12..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:48:38 Download gff for BO13120.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2543153..2543734 12..594 99   Plus

BO13120.5prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO13120.5prime
GAAGTTATCAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAG
TCGAGACAGAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACC
CTGAAACCCTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTC
AGGGCGCGCCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCC
AAGTCGCGCCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCG
ATTTCCACAAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCT
TGGCAATGCTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCG
AACCCGGCGAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCG
CTGGAGGACTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGG
GCTTGAGGAGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGA
ATTTGGTGGAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTG
GAGGAGGACGACACTACGGGTGACGAGGACAAGGTCAACGCCGCAAGCTT
TCTAGACC

BO13120.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3183-PA 579 geminin-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
geminin-RB 939 CG3183-RB 173..748 17..592 2880 100 Plus
geminin-RA 1061 CG3183-RA 295..870 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6655654..6656229 592..17 2880 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:44:44 has no hits.

BO13120.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:27 Download gff for BO13120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3183-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:12 Download gff for BO13120.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3183-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:39 Download gff for BO13120.5prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..803 17..599 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:08 Download gff for BO13120.5prime
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 295..876 17..599 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:08 Download gff for BO13120.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6655648..6656229 17..599 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:39 Download gff for BO13120.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2543153..2543734 17..599 99   Minus

BO13120.complete Sequence

610 bp assembled on 2006-10-11

GenBank Submission: FJ632683

> BO13120.complete
GAAGTTATCAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAG
TCGAGACAGAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACC
CTGAAACCCTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTC
AGGGCGCGCCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCC
AAGTCGCGCCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCG
ATTTCCACAAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCT
TGGCAATGCTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCG
AACCCGGCGAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCG
CTGGAGGACTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGG
GCTTGAGGAGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGA
ATTTGGTGGAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTG
GAGGAGGACGACACTACGGGTGACGAGGACAAGGTCAACGCCGCAAGCTT
TCTAGACCAT

BO13120.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
geminin-RB 579 CG3183-PB 1..576 17..592 2880 100 Plus
geminin-RA 579 CG3183-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
geminin-RB 939 CG3183-RB 173..748 17..592 2880 100 Plus
geminin-RA 1061 CG3183-RA 295..870 17..592 2880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6655654..6656229 592..17 2880 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:38:14 has no hits.

BO13120.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:55 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:30 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..803 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:07 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..797 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:55 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 222..803 17..599 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:06 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
geminin-RA 295..870 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:06 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6655652..6656229 17..594 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:07 Download gff for BO13120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2543157..2543734 17..594 99   Minus

BO13120.pep Sequence

Translation from 16 to 610

> BO13120.pep
MSSSAARVYIQVETEAEQKEHLKQQRQTLKPLQGNVNDKENLTGSGRASI
VDQLSRLKAGVQVAPKYGKRKCVDTAPAISTKDADTQTDAEAVPLGNADK
PITAEDLTSTAEPGENYYKLLAEQRRLALEDSLTENRHLHERIEGLEEEM
DTMRQELDEAKNLVEVLKEICEEDNSEVEEDDTTGDEDKVNAASFLDH

BO13120.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
geminin-PB 192 CG3183-PB 1..192 1..192 967 100 Plus
geminin-PA 192 CG3183-PA 1..192 1..192 967 100 Plus