Clone Sequence Records
BO13120.3prime Sequence
609 bp (573 high quality bases) assembled on 2006-05-08
> BO13120.3prime
ATGGTCTAGAAAGCTTGCGGCGTTGACCTTGTCCTCGTCACCCGTAGTGT
CGTCCTCCTCCACCTCGCTGTTGTCCTCTTCGCAGATCTCCTTCAGGACC
TCCACCAAATTCTTGGCCTCGTCCAGTTCCTGGCGCATAGTGTCCATCTC
CTCCTCAAGCCCCTCGATGCGCTCGTGCAGATGGCGGTTTTCGGTGAGCG
AGTCCTCCAGCGCCAGTCGCCGCTGCTCGGCCAGCAGCTTGTAGTAGTTC
TCGCCGGGTTCGGCTGTGCTAGTGAGATCCTCTGCCGTGATGGGCTTGTC
AGCATTGCCAAGCGGAACGGCCTCAGCATCAGTCTGGGTATCCGCATCCT
TTGTGGAAATCGCGGGCGCCGTGTCCACGCATTTGCGCTTGCCGTACTTG
GGCGCGACTTGGACGCCGGCCTTCAGACGACTCAGCTGATCCACGATGGA
GGCGCGCCCTGAACCAGTGAGGTTCTCCTTATCGTTTACGTTGCCCTGCA
AGGGTTTCAGGGTCTGTCTCTGCTGCTTCAGGTGCTCCTTCTGCTCGGCC
TCTGTCTCGACTTGGATGTAGACCCTGCCAGCGCTCGAAGACATGTCGAC
TGATAACTT
BO13120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3183-PA | 579 | geminin-RA | 1..576 | 594..19 | 2855 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
geminin-RB | 939 | CG3183-RB | 173..748 | 594..19 | 2865 | 99.8 | Minus |
geminin-RA | 1061 | CG3183-RA | 295..870 | 594..19 | 2865 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6655654..6656229 | 19..594 | 2865 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:36:56 has no hits.
BO13120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:26 Download gff for
BO13120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3183-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:10 Download gff for
BO13120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3183-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:48:38 Download gff for
BO13120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 222..803 | 12..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:08 Download gff for
BO13120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 295..876 | 12..594 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:08 Download gff for
BO13120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6655648..6656229 | 12..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:48:38 Download gff for
BO13120.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2543153..2543734 | 12..594 | 99 | | Plus |
BO13120.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13120.5prime
GAAGTTATCAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAG
TCGAGACAGAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACC
CTGAAACCCTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTC
AGGGCGCGCCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCC
AAGTCGCGCCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCG
ATTTCCACAAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCT
TGGCAATGCTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCG
AACCCGGCGAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCG
CTGGAGGACTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGG
GCTTGAGGAGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGA
ATTTGGTGGAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTG
GAGGAGGACGACACTACGGGTGACGAGGACAAGGTCAACGCCGCAAGCTT
TCTAGACC
BO13120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3183-PA | 579 | geminin-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
geminin-RB | 939 | CG3183-RB | 173..748 | 17..592 | 2880 | 100 | Plus |
geminin-RA | 1061 | CG3183-RA | 295..870 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6655654..6656229 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:44:44 has no hits.
BO13120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:27 Download gff for
BO13120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3183-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:12 Download gff for
BO13120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3183-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:39 Download gff for
BO13120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 222..803 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:08 Download gff for
BO13120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 295..876 | 17..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:08 Download gff for
BO13120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6655648..6656229 | 17..599 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:39 Download gff for
BO13120.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2543153..2543734 | 17..599 | 99 | | Minus |
BO13120.complete Sequence
610 bp assembled on 2006-10-11
GenBank Submission: FJ632683
> BO13120.complete
GAAGTTATCAGTCGACATGTCTTCGAGCGCTGCCAGGGTCTACATCCAAG
TCGAGACAGAGGCCGAGCAGAAGGAGCACCTGAAGCAGCAGAGACAGACC
CTGAAACCCTTGCAGGGCAACGTAAACGATAAGGAGAACCTCACTGGTTC
AGGGCGCGCCTCCATCGTGGATCAGCTGAGTCGTCTGAAGGCCGGCGTCC
AAGTCGCGCCCAAGTACGGCAAGCGCAAATGCGTGGACACGGCGCCCGCG
ATTTCCACAAAGGATGCGGATACCCAGACTGATGCTGAGGCCGTTCCGCT
TGGCAATGCTGACAAGCCCATCACGGCAGAGGATCTCACTAGCACAGCCG
AACCCGGCGAGAACTACTACAAGCTGCTGGCCGAGCAGCGGCGACTGGCG
CTGGAGGACTCGCTCACCGAAAACCGCCATCTGCACGAGCGCATCGAGGG
GCTTGAGGAGGAGATGGACACTATGCGCCAGGAACTGGACGAGGCCAAGA
ATTTGGTGGAGGTCCTGAAGGAGATCTGCGAAGAGGACAACAGCGAGGTG
GAGGAGGACGACACTACGGGTGACGAGGACAAGGTCAACGCCGCAAGCTT
TCTAGACCAT
BO13120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
geminin-RB | 579 | CG3183-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
geminin-RA | 579 | CG3183-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
geminin-RB | 939 | CG3183-RB | 173..748 | 17..592 | 2880 | 100 | Plus |
geminin-RA | 1061 | CG3183-RA | 295..870 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6655654..6656229 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:38:14 has no hits.
BO13120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:55 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:30 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 222..803 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:07 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 222..797 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:55 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 222..803 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:06 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
geminin-RA | 295..870 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:06 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6655652..6656229 | 17..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:07 Download gff for
BO13120.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2543157..2543734 | 17..594 | 99 | | Minus |
BO13120.pep Sequence
Translation from 16 to 610
> BO13120.pep
MSSSAARVYIQVETEAEQKEHLKQQRQTLKPLQGNVNDKENLTGSGRASI
VDQLSRLKAGVQVAPKYGKRKCVDTAPAISTKDADTQTDAEAVPLGNADK
PITAEDLTSTAEPGENYYKLLAEQRRLALEDSLTENRHLHERIEGLEEEM
DTMRQELDEAKNLVEVLKEICEEDNSEVEEDDTTGDEDKVNAASFLDH
BO13120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
geminin-PB | 192 | CG3183-PB | 1..192 | 1..192 | 967 | 100 | Plus |
geminin-PA | 192 | CG3183-PA | 1..192 | 1..192 | 967 | 100 | Plus |