Clone Sequence Records
BO13123.5prime Sequence
434 bp (433 high quality bases) assembled on 2006-05-08
> BO13123.5prime
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAAGCAAGCTTTCTAGACC
BO13123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2140-PB | 405 | Cyt-b5-RB | 1..402 | 17..418 | 2010 | 100 | Plus |
CG2140-PA | 372 | Cyt-b5-RA | 88..369 | 137..418 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 830 | CG2140-RB | 105..507 | 16..418 | 2015 | 100 | Plus |
Cyt-b5-RA | 692 | CG2140-RA | 88..369 | 137..418 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7535330..7535613 | 135..418 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 7533610..7533730 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:59 has no hits.
BO13123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:33 Download gff for
BO13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2140-PB | 1..405 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:20 Download gff for
BO13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2140-PB | 1..405 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:10 Download gff for
BO13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..507 | 7..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:21 Download gff for
BO13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..507 | 7..418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:21 Download gff for
BO13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7533605..7533730 | 7..136 | 96 | -> | Plus |
2R | 7535332..7535613 | 137..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:10 Download gff for
BO13123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3421110..3421235 | 7..136 | 96 | -> | Plus |
arm_2R | 3422837..3423118 | 137..418 | 100 | | Plus |
BO13123.3prime Sequence
434 bp (433 high quality bases) assembled on 2006-05-08
> BO13123.3prime
ATGGTCTAGAAAGCTTGCTTGCTTGGCACCGCCAAAGAAGAACTTGTAGA
AGAGCGTGGCCACCAAGCACAGGACGAGGGGCACCAGCCACGACTTCACA
GAACTCTCCTCGGTTTGCTGTTCCGTGCTCCAGGTCGGCTCCGACTTCTG
GGCCACGCTTGTCCTTTCGCTCTCCACCAGCTCACCGATTTTGTACTTCT
TCATCATGTCGCGGGCATCGTTGCTGTGGCCAACGTCCTCAAAGTTCTCC
GTGGCATCTTTGCCGGCCTGCTCGATGAGCACCTCTTCGCCACCGGGATG
CTCGTTGAGGAAGGCGGTGACGTCGTAGATGTTGTTGTGTATGAGCAGCC
AGGTGTCCTTGTTCGTGTTGTGCTTGGCGACCTCGGCCCGCGTGAAAGTC
TTTGTTTCCTCGCTCGACATGTCGACTGATAACT
BO13123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2140-PB | 405 | Cyt-b5-RB | 1..402 | 420..19 | 2010 | 100 | Minus |
CG2140-PA | 372 | Cyt-b5-RA | 88..369 | 300..19 | 1410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 830 | CG2140-RB | 105..507 | 421..19 | 2015 | 100 | Minus |
Cyt-b5-RA | 692 | CG2140-RA | 88..369 | 300..19 | 1410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7535330..7535613 | 302..19 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 7533610..7533730 | 421..301 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:44:41 has no hits.
BO13123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:32 Download gff for
BO13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2140-PB | 1..405 | 18..420 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:19 Download gff for
BO13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2140-PB | 1..405 | 18..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:01 Download gff for
BO13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..507 | 19..430 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:38 Download gff for
BO13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 100..507 | 19..430 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:38 Download gff for
BO13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7533605..7533730 | 301..430 | 96 | -> | Minus |
2R | 7535332..7535613 | 19..300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:01 Download gff for
BO13123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3421110..3421235 | 301..430 | 96 | -> | Minus |
arm_2R | 3422837..3423118 | 19..300 | 100 | | Minus |
BO13123.complete Sequence
436 bp assembled on 2006-10-11
GenBank Submission: FJ632684
> BO13123.complete
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAAGCAAGCTTTCTAGACCAT
BO13123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 405 | CG2140-PB | 1..402 | 17..418 | 2010 | 100 | Plus |
Cyt-b5-RA | 372 | CG2140-PA | 88..369 | 137..418 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-RB | 830 | CG2140-RB | 105..507 | 16..418 | 2015 | 100 | Plus |
Cyt-b5-RA | 692 | CG2140-RA | 88..369 | 137..418 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7535330..7535613 | 135..418 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 7533610..7533730 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:29 has no hits.
BO13123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:59 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 1..405 | 17..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:42 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 98..505 | 7..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:35 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 106..507 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:59 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 98..505 | 7..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:48 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyt-b5-RB | 106..507 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:48 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7533611..7533730 | 17..136 | 100 | -> | Plus |
2R | 7535332..7535613 | 137..420 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:35 Download gff for
BO13123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3421116..3421235 | 17..136 | 100 | -> | Plus |
arm_2R | 3422837..3423118 | 137..420 | 99 | | Plus |
BO13123.pep Sequence
Translation from 16 to 436
> BO13123.pep
MSSEETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIE
QAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTWSTE
QQTEESSVKSWLVPLVLCLVATLFYKFFFGGAKQASFLDH
BO13123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyt-b5-PB | 134 | CG2140-PB | 1..134 | 1..134 | 700 | 100 | Plus |
Cyt-b5-PA | 123 | CG2140-PA | 27..123 | 38..134 | 491 | 96.9 | Plus |
CG3566-PC | 89 | CG3566-PC | 2..81 | 6..85 | 235 | 52.5 | Plus |
CG3566-PD | 106 | CG3566-PD | 2..81 | 6..85 | 235 | 52.5 | Plus |
CG3566-PB | 117 | CG3566-PB | 2..81 | 6..85 | 235 | 52.5 | Plus |