Clone BO13123 Report

Search the DGRC for BO13123

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-b5-RB
Protein status:BO13123.pep: validated full length
Sequenced Size:436

Clone Sequence Records

BO13123.5prime Sequence

434 bp (433 high quality bases) assembled on 2006-05-08

> BO13123.5prime
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAAGCAAGCTTTCTAGACC

BO13123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2140-PB 405 Cyt-b5-RB 1..402 17..418 2010 100 Plus
CG2140-PA 372 Cyt-b5-RA 88..369 137..418 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 830 CG2140-RB 105..507 16..418 2015 100 Plus
Cyt-b5-RA 692 CG2140-RA 88..369 137..418 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535330..7535613 135..418 1420 100 Plus
2R 25286936 2R 7533610..7533730 16..136 605 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:26:59 has no hits.

BO13123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:33 Download gff for BO13123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2140-PB 1..405 17..419 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:20 Download gff for BO13123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2140-PB 1..405 17..419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:10 Download gff for BO13123.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..507 7..418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:21 Download gff for BO13123.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..507 7..418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:21 Download gff for BO13123.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7533605..7533730 7..136 96 -> Plus
2R 7535332..7535613 137..418 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:10 Download gff for BO13123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3421110..3421235 7..136 96 -> Plus
arm_2R 3422837..3423118 137..418 100   Plus

BO13123.3prime Sequence

434 bp (433 high quality bases) assembled on 2006-05-08

> BO13123.3prime
ATGGTCTAGAAAGCTTGCTTGCTTGGCACCGCCAAAGAAGAACTTGTAGA
AGAGCGTGGCCACCAAGCACAGGACGAGGGGCACCAGCCACGACTTCACA
GAACTCTCCTCGGTTTGCTGTTCCGTGCTCCAGGTCGGCTCCGACTTCTG
GGCCACGCTTGTCCTTTCGCTCTCCACCAGCTCACCGATTTTGTACTTCT
TCATCATGTCGCGGGCATCGTTGCTGTGGCCAACGTCCTCAAAGTTCTCC
GTGGCATCTTTGCCGGCCTGCTCGATGAGCACCTCTTCGCCACCGGGATG
CTCGTTGAGGAAGGCGGTGACGTCGTAGATGTTGTTGTGTATGAGCAGCC
AGGTGTCCTTGTTCGTGTTGTGCTTGGCGACCTCGGCCCGCGTGAAAGTC
TTTGTTTCCTCGCTCGACATGTCGACTGATAACT

BO13123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2140-PB 405 Cyt-b5-RB 1..402 420..19 2010 100 Minus
CG2140-PA 372 Cyt-b5-RA 88..369 300..19 1410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 830 CG2140-RB 105..507 421..19 2015 100 Minus
Cyt-b5-RA 692 CG2140-RA 88..369 300..19 1410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535330..7535613 302..19 1420 100 Minus
2R 25286936 2R 7533610..7533730 421..301 605 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:44:41 has no hits.

BO13123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:32 Download gff for BO13123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2140-PB 1..405 18..420 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:19 Download gff for BO13123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2140-PB 1..405 18..420 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:01 Download gff for BO13123.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..507 19..430 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:38 Download gff for BO13123.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 100..507 19..430 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:38 Download gff for BO13123.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7533605..7533730 301..430 96 -> Minus
2R 7535332..7535613 19..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:01 Download gff for BO13123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3421110..3421235 301..430 96 -> Minus
arm_2R 3422837..3423118 19..300 100   Minus

BO13123.complete Sequence

436 bp assembled on 2006-10-11

GenBank Submission: FJ632684

> BO13123.complete
GAAGTTATCAGTCGACATGTCGAGCGAGGAAACAAAGACTTTCACGCGGG
CCGAGGTCGCCAAGCACAACACGAACAAGGACACCTGGCTGCTCATACAC
AACAACATCTACGACGTCACCGCCTTCCTCAACGAGCATCCCGGTGGCGA
AGAGGTGCTCATCGAGCAGGCCGGCAAAGATGCCACGGAGAACTTTGAGG
ACGTTGGCCACAGCAACGATGCCCGCGACATGATGAAGAAGTACAAAATC
GGTGAGCTGGTGGAGAGCGAAAGGACAAGCGTGGCCCAGAAGTCGGAGCC
GACCTGGAGCACGGAACAGCAAACCGAGGAGAGTTCTGTGAAGTCGTGGC
TGGTGCCCCTCGTCCTGTGCTTGGTGGCCACGCTCTTCTACAAGTTCTTC
TTTGGCGGTGCCAAGCAAGCAAGCTTTCTAGACCAT

BO13123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 405 CG2140-PB 1..402 17..418 2010 100 Plus
Cyt-b5-RA 372 CG2140-PA 88..369 137..418 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-RB 830 CG2140-RB 105..507 16..418 2015 100 Plus
Cyt-b5-RA 692 CG2140-RA 88..369 137..418 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7535330..7535613 135..418 1420 100 Plus
2R 25286936 2R 7533610..7533730 16..136 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:36:29 has no hits.

BO13123.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:59 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 1..405 17..419 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:42 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 98..505 7..418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:35 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 106..507 17..420 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:59 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 98..505 7..418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:48 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-b5-RB 106..507 17..420 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:48 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7533611..7533730 17..136 100 -> Plus
2R 7535332..7535613 137..420 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:35 Download gff for BO13123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3421116..3421235 17..136 100 -> Plus
arm_2R 3422837..3423118 137..420 99   Plus

BO13123.pep Sequence

Translation from 16 to 436

> BO13123.pep
MSSEETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIE
QAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTWSTE
QQTEESSVKSWLVPLVLCLVATLFYKFFFGGAKQASFLDH

BO13123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-b5-PB 134 CG2140-PB 1..134 1..134 700 100 Plus
Cyt-b5-PA 123 CG2140-PA 27..123 38..134 491 96.9 Plus
CG3566-PC 89 CG3566-PC 2..81 6..85 235 52.5 Plus
CG3566-PD 106 CG3566-PD 2..81 6..85 235 52.5 Plus
CG3566-PB 117 CG3566-PB 2..81 6..85 235 52.5 Plus