Clone BO13124 Report

Search the DGRC for BO13124

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG10219-RA
Protein status:BO13124.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO13124.3prime Sequence

578 bp (577 high quality bases) assembled on 2006-05-08

> BO13124.3prime
ATGGTCTAGAAAGCTTGCAGCCTTCTCGGCATCCTTGCCCTTGATGGCCC
AGAAGCGCTTGATACCATTGGCCAGACCCACATCATTTTGGATGAAGTAG
AAGAGGCCGCCCAGCGTGGCCACCGAGATGATGATCAGCGCAATGTGGGC
TACCTTGGGCAGGACGTTTCCAACGACAGATGGCCGCATGTAGTCAACTA
CCATGGCCTCCACGCCCCAATGGGTGTGGATGACGACAGAGATGGCCATG
AGGGCGTCCAATACCTGGGATGGAGCTATGAAGGCAGCTGGAATGACGGC
CAGTAGGCCGGCGGACACAATTCGCTCCACAGTCCAGAGCAGGGTGTGGC
TGGATCCAGCGGAAGCCATGCGGGGCGCACTCACGGAGATCTCGCGCACG
ACGGGCGCTACAATCTTGGCCACGGCCAGGGGCTGGACCACCGCCTTCCG
CTGGACATTGGCCACCAGGGTGGAGTAGCTCTTCAGGGGAGTGATGCGAG
CCGACTTAACAAGATTTGCGGCATTGCAACGGACAGCGCCACGCAGAAGC
AACGAGAGGGACATGTCGACTGATAACT

BO13124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-PA 549 CG10219-RA 1..546 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 894 CG10219-RA 105..652 566..19 2740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23759725..23759924 19..218 1000 100 Plus
3R 32079331 3R 23759984..23760173 217..406 950 100 Plus
3R 32079331 3R 23760245..23760361 406..522 585 100 Plus
3R 32079331 3R 23760452..23760496 522..566 225 100 Plus
Blast to na_te.dros performed on 2015-01-31 12:00:44 has no hits.

BO13124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:34 Download gff for BO13124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-PA 1..549 15..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:21 Download gff for BO13124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-PA 1..549 15..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:54:53 Download gff for BO13124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..655 15..574 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:00:28 Download gff for BO13124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..655 15..574 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:00:28 Download gff for BO13124.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23759721..23759923 15..217 99 <- Plus
3R 23759985..23760172 218..405 100 <- Plus
3R 23760245..23760360 406..521 100 <- Plus
3R 23760452..23760502 522..574 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:54:53 Download gff for BO13124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19585443..19585645 15..217 99 <- Plus
arm_3R 19585707..19585894 218..405 100 <- Plus
arm_3R 19585967..19586082 406..521 100 <- Plus
arm_3R 19586174..19586224 522..574 92   Plus

BO13124.5prime Sequence

578 bp (577 high quality bases) assembled on 2006-05-08

> BO13124.5prime
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTGCAAGCTTTCTAGACC

BO13124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-PA 549 CG10219-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 894 CG10219-RA 105..652 15..562 2740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23759725..23759924 562..363 1000 100 Minus
3R 32079331 3R 23759984..23760173 364..175 950 100 Minus
3R 32079331 3R 23760245..23760361 175..59 585 100 Minus
3R 32079331 3R 23760452..23760496 59..15 225 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:13:49 has no hits.

BO13124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:35 Download gff for BO13124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-PA 1..549 17..566 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:23 Download gff for BO13124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-PA 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:59 Download gff for BO13124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..655 7..566 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:42 Download gff for BO13124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 99..655 7..566 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:42 Download gff for BO13124.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23759721..23759923 364..566 99 <- Minus
3R 23759985..23760172 176..363 100 <- Minus
3R 23760245..23760360 60..175 100 <- Minus
3R 23760452..23760502 7..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:59 Download gff for BO13124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19585443..19585645 364..566 99 <- Minus
arm_3R 19585707..19585894 176..363 100 <- Minus
arm_3R 19585967..19586082 60..175 100 <- Minus
arm_3R 19586174..19586224 7..59 92   Minus

BO13124.complete Sequence

580 bp assembled on 2006-10-11

GenBank Submission: FJ632685

> BO13124.complete
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTGCAAGCTTTCTAGACCAT

BO13124.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 549 CG10219-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-RA 894 CG10219-RA 105..652 15..562 2740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23759725..23759924 562..363 1000 100 Minus
3R 32079331 3R 23759984..23760173 364..175 950 100 Minus
3R 32079331 3R 23760245..23760361 175..59 585 100 Minus
3R 32079331 3R 23760452..23760496 59..15 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:55:39 has no hits.

BO13124.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:58 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:15 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 95..651 7..566 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:33 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 107..652 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:59 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 95..651 7..566 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:12 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
CG10219-RA 107..652 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:12 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23760245..23760360 60..175 100 <- Minus
3R 23760452..23760494 17..59 100   Minus
3R 23759985..23760172 176..363 100 <- Minus
3R 23759723..23759923 364..564 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:33 Download gff for BO13124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19585707..19585894 176..363 100 <- Minus
arm_3R 19585967..19586082 60..175 100 <- Minus
arm_3R 19586174..19586216 17..59 100   Minus
arm_3R 19585445..19585645 364..564 99 <- Minus

BO13124.pep Sequence

Translation from 16 to 580

> BO13124.pep
MSLSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAK
IVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQ
VLDALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVAT
LGGLFYFIQNDVGLANGIKRFWAIKGKDAEKAASFLDH

BO13124.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10219-PA 182 CG10219-PA 1..182 1..182 888 100 Plus