Clone Sequence Records
BO13124.3prime Sequence
578 bp (577 high quality bases) assembled on 2006-05-08
> BO13124.3prime
ATGGTCTAGAAAGCTTGCAGCCTTCTCGGCATCCTTGCCCTTGATGGCCC
AGAAGCGCTTGATACCATTGGCCAGACCCACATCATTTTGGATGAAGTAG
AAGAGGCCGCCCAGCGTGGCCACCGAGATGATGATCAGCGCAATGTGGGC
TACCTTGGGCAGGACGTTTCCAACGACAGATGGCCGCATGTAGTCAACTA
CCATGGCCTCCACGCCCCAATGGGTGTGGATGACGACAGAGATGGCCATG
AGGGCGTCCAATACCTGGGATGGAGCTATGAAGGCAGCTGGAATGACGGC
CAGTAGGCCGGCGGACACAATTCGCTCCACAGTCCAGAGCAGGGTGTGGC
TGGATCCAGCGGAAGCCATGCGGGGCGCACTCACGGAGATCTCGCGCACG
ACGGGCGCTACAATCTTGGCCACGGCCAGGGGCTGGACCACCGCCTTCCG
CTGGACATTGGCCACCAGGGTGGAGTAGCTCTTCAGGGGAGTGATGCGAG
CCGACTTAACAAGATTTGCGGCATTGCAACGGACAGCGCCACGCAGAAGC
AACGAGAGGGACATGTCGACTGATAACT
BO13124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-PA | 549 | CG10219-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 894 | CG10219-RA | 105..652 | 566..19 | 2740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23759725..23759924 | 19..218 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 23759984..23760173 | 217..406 | 950 | 100 | Plus |
3R | 32079331 | 3R | 23760245..23760361 | 406..522 | 585 | 100 | Plus |
3R | 32079331 | 3R | 23760452..23760496 | 522..566 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:00:44 has no hits.
BO13124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:34 Download gff for
BO13124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-PA | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:21 Download gff for
BO13124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-PA | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:54:53 Download gff for
BO13124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..655 | 15..574 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:00:28 Download gff for
BO13124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..655 | 15..574 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:00:28 Download gff for
BO13124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23759721..23759923 | 15..217 | 99 | <- | Plus |
3R | 23759985..23760172 | 218..405 | 100 | <- | Plus |
3R | 23760245..23760360 | 406..521 | 100 | <- | Plus |
3R | 23760452..23760502 | 522..574 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:54:53 Download gff for
BO13124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19585443..19585645 | 15..217 | 99 | <- | Plus |
arm_3R | 19585707..19585894 | 218..405 | 100 | <- | Plus |
arm_3R | 19585967..19586082 | 406..521 | 100 | <- | Plus |
arm_3R | 19586174..19586224 | 522..574 | 92 | | Plus |
BO13124.5prime Sequence
578 bp (577 high quality bases) assembled on 2006-05-08
> BO13124.5prime
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTGCAAGCTTTCTAGACC
BO13124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-PA | 549 | CG10219-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 894 | CG10219-RA | 105..652 | 15..562 | 2740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23759725..23759924 | 562..363 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 23759984..23760173 | 364..175 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23760245..23760361 | 175..59 | 585 | 100 | Minus |
3R | 32079331 | 3R | 23760452..23760496 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:13:49 has no hits.
BO13124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:35 Download gff for
BO13124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-PA | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:23 Download gff for
BO13124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-PA | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:59 Download gff for
BO13124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..655 | 7..566 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:41:42 Download gff for
BO13124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 99..655 | 7..566 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:41:42 Download gff for
BO13124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23759721..23759923 | 364..566 | 99 | <- | Minus |
3R | 23759985..23760172 | 176..363 | 100 | <- | Minus |
3R | 23760245..23760360 | 60..175 | 100 | <- | Minus |
3R | 23760452..23760502 | 7..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:59 Download gff for
BO13124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19585443..19585645 | 364..566 | 99 | <- | Minus |
arm_3R | 19585707..19585894 | 176..363 | 100 | <- | Minus |
arm_3R | 19585967..19586082 | 60..175 | 100 | <- | Minus |
arm_3R | 19586174..19586224 | 7..59 | 92 | | Minus |
BO13124.complete Sequence
580 bp assembled on 2006-10-11
GenBank Submission: FJ632685
> BO13124.complete
GAAGTTATCAGTCGACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCC
GTTGCAATGCCGCAAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAG
AGCTACTCCACCCTGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCC
CCTGGCCGTGGCCAAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGA
GTGCGCCCCGCATGGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACT
GTGGAGCGAATTGTGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTT
CATAGCTCCATCCCAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCA
TCCACACCCATTGGGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCA
TCTGTCGTTGGAAACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCAT
CATCTCGGTGGCCACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATG
TGGGTCTGGCCAATGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGAT
GCCGAGAAGGCTGCAAGCTTTCTAGACCAT
BO13124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 549 | CG10219-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-RA | 894 | CG10219-RA | 105..652 | 15..562 | 2740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23759725..23759924 | 562..363 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 23759984..23760173 | 364..175 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23760245..23760361 | 175..59 | 585 | 100 | Minus |
3R | 32079331 | 3R | 23760452..23760496 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:39 has no hits.
BO13124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:58 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:15 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 95..651 | 7..566 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:33 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 107..652 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:59 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 95..651 | 7..566 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:12 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10219-RA | 107..652 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:12 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23760245..23760360 | 60..175 | 100 | <- | Minus |
3R | 23760452..23760494 | 17..59 | 100 | | Minus |
3R | 23759985..23760172 | 176..363 | 100 | <- | Minus |
3R | 23759723..23759923 | 364..564 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:33 Download gff for
BO13124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19585707..19585894 | 176..363 | 100 | <- | Minus |
arm_3R | 19585967..19586082 | 60..175 | 100 | <- | Minus |
arm_3R | 19586174..19586216 | 17..59 | 100 | | Minus |
arm_3R | 19585445..19585645 | 364..564 | 99 | <- | Minus |
BO13124.pep Sequence
Translation from 16 to 580
> BO13124.pep
MSLSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAK
IVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQ
VLDALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVAT
LGGLFYFIQNDVGLANGIKRFWAIKGKDAEKAASFLDH
BO13124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10219-PA | 182 | CG10219-PA | 1..182 | 1..182 | 888 | 100 | Plus |