Clone BO13125 Report

Search the DGRC for BO13125

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptSer6-RA
Protein status:BO13125.pep: validated full length
Sequenced Size:811

Clone Sequence Records

BO13125.3prime Sequence

713 bp (624 high quality bases) assembled on 2006-05-08

> BO13125.3prime
ATGGTCTAGAAAGCTTGCGACATCAGAGTGCTTTTTGATCCAGTCCTTAA
AGTAAAAGACCCTGGCATATCCGTCCGGGTAGGTGGACCCACATCCGTCC
ACGACGAATCCGGCCACGCCCACCAGTTGGTTGTTATATACGGCCGGGCC
ACCGGAATCGCCATTGCAAGCACCATTGTCCACCTGGTGGAGCAGGCACA
GCTCGCCCTCAAATCCGAAATCGATCAGCTCCTCACACTGCTGCCTGGTT
ATCGACTTTAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCTGGTG
TTTGATCCTTCCCCATCCGGAAATTACGACATCTACATCCGCTGGCGTAT
CCACAGTGGGTAGATCGATGGGCTGAATGCTCGCGGACAGAATCAGTGGG
CTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACTCCTC
GTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAATCGAT
CGTTTGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCGATTGGCGTAATC
ACATGATTCACGTCCTCGTTGGAGACACAATGGGCGGCGGTTAAGATGTA
GGTTCTGGTCAGAATTGAACCTCCACAGCTGTGGGAACCGGCGTTCCTCA
GGGAGACCTGGTGGGGGAAACTGATTTTTCACCGCATCCTCACCGCCCAC
CACTCGACCGTTC

BO13125.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2071-PA 780 Ser6-RA 130..777 666..19 3240 100 Minus
CG1304-PA 783 CG1304-RA 253..542 543..254 1150 95.8 Minus
CG1304-PA 783 CG1304-RA 130..221 666..575 260 91.3 Minus
CG2071-PA 780 Ser6-RA 84..133 713..664 250 100 Minus
CG1304-PA 783 CG1304-RA 85..133 712..664 220 97.9 Minus
CG1304-PA 783 CG1304-RA 628..692 168..104 200 92.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 901 CG2071-RA 102..795 713..19 3450 99.9 Minus
CG1304-RA 893 CG1304-RA 101..753 712..59 2005 87.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962711..20963404 19..713 3425 99.9 Plus
X 23542271 X 20964667..20965319 59..712 1915 87.2 Plus
Blast to na_te.dros performed on 2015-02-11 16:35:54 has no hits.

BO13125.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:36 Download gff for BO13125.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-PA 84..780 15..713 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:24 Download gff for BO13125.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2071-PA 84..780 15..713 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:07 Download gff for BO13125.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 102..799 14..713 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:33 Download gff for BO13125.3prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 102..799 14..713 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:33 Download gff for BO13125.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20962707..20963404 14..713 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:07 Download gff for BO13125.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833734..20834431 14..713 99   Plus

BO13125.5prime Sequence

705 bp (693 high quality bases) assembled on 2006-05-08

> BO13125.5prime
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATT

BO13125.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2071-PA 780 Ser6-RA 1..689 17..705 3445 100 Plus
CG1304-PA 783 CG1304-RA 253..542 269..558 1150 95.8 Plus
CG1304-PA 783 CG1304-RA 85..221 101..237 460 93.4 Plus
CG1304-PA 783 CG1304-RA 628..686 644..702 195 93.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 901 CG2071-RA 19..707 17..705 3445 100 Plus
CG1304-RA 893 CG1304-RA 34..702 34..702 2120 88.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962799..20963487 705..17 3445 100 Minus
X 23542271 X 20964718..20965386 702..34 2070 87.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:06:15 has no hits.

BO13125.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:37 Download gff for BO13125.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-PA 1..689 17..705 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:25 Download gff for BO13125.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2071-PA 1..689 17..705 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:31 Download gff for BO13125.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..707 17..705 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:07 Download gff for BO13125.5prime
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..707 17..705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:07 Download gff for BO13125.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20962799..20963487 17..705 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:31 Download gff for BO13125.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833826..20834514 17..705 100   Minus

BO13125.complete Sequence

811 bp assembled on 2006-10-11

GenBank Submission: FJ632686

> BO13125.complete
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATTCGTCGTGGACGGATGTGGGTCCACCTACCCGGACGGATATGCCAG
GGTCTTTTACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCGCAAGCT
TTCTAGACCAT

BO13125.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 780 CG2071-PA 1..777 17..793 3885 100 Plus
CG1304-RA 783 CG1304-PA 18..737 34..753 2100 86.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 901 CG2071-RA 19..795 17..793 3885 100 Plus
CG1304-RA 893 CG1304-RA 34..753 34..753 2100 86.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962711..20963487 793..17 3885 100 Minus
X 23542271 X 20964667..20965386 753..34 2100 86.7 Minus
Blast to na_te.dros performed on 2014-11-28 01:14:25 has no hits.

BO13125.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:36 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:35 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 15..795 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:28 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..795 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:36 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 15..795 17..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:32 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 19..795 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:32 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
X 20962709..20963487 17..795 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:28 Download gff for BO13125.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833736..20834514 17..795 99   Minus

BO13125.pep Sequence

Translation from 16 to 811

> BO13125.pep
MTFGKVAILLCSFLLFLVLPVQSAPGKLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTVDT
PADVDVVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFGFEGELC
LLHQVDNGACNGDSGGPAVYNNQLVGVAGFVVDGCGSTYPDGYARVFYFK
DWIKKHSDVASFLDH

BO13125.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-PA 259 CG2071-PA 1..259 1..259 1361 100 Plus
CG1304-PA 260 CG1304-PA 5..259 5..259 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 27..251 31..259 508 46.1 Plus
CG32523-PA 262 CG32523-PA 11..256 8..253 452 42.2 Plus
CG4653-PA 254 CG4653-PA 37..253 44..257 422 41.2 Plus