Clone Sequence Records
BO13125.3prime Sequence
713 bp (624 high quality bases) assembled on 2006-05-08
> BO13125.3prime
ATGGTCTAGAAAGCTTGCGACATCAGAGTGCTTTTTGATCCAGTCCTTAA
AGTAAAAGACCCTGGCATATCCGTCCGGGTAGGTGGACCCACATCCGTCC
ACGACGAATCCGGCCACGCCCACCAGTTGGTTGTTATATACGGCCGGGCC
ACCGGAATCGCCATTGCAAGCACCATTGTCCACCTGGTGGAGCAGGCACA
GCTCGCCCTCAAATCCGAAATCGATCAGCTCCTCACACTGCTGCCTGGTT
ATCGACTTTAGGGTGTTGTACTGCAGATAGCGTGGCAAGTCTCCCTGGTG
TTTGATCCTTCCCCATCCGGAAATTACGACATCTACATCCGCTGGCGTAT
CCACAGTGGGTAGATCGATGGGCTGAATGCTCGCGGACAGAATCAGTGGG
CTCTCTAGTCGCAGCAGAGCAACGTCGTTAAGGAAGTTACCATACTCCTC
GTGGACAATTACCTCGGCCACCTGGACAAGGACTCCACCGCTGAATCGAT
CGTTTGAGCCCGCTCGAATGGTGAAACGCTCCGCAGCGATTGGCGTAATC
ACATGATTCACGTCCTCGTTGGAGACACAATGGGCGGCGGTTAAGATGTA
GGTTCTGGTCAGAATTGAACCTCCACAGCTGTGGGAACCGGCGTTCCTCA
GGGAGACCTGGTGGGGGAAACTGATTTTTCACCGCATCCTCACCGCCCAC
CACTCGACCGTTC
BO13125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2071-PA | 780 | Ser6-RA | 130..777 | 666..19 | 3240 | 100 | Minus |
CG1304-PA | 783 | CG1304-RA | 253..542 | 543..254 | 1150 | 95.8 | Minus |
CG1304-PA | 783 | CG1304-RA | 130..221 | 666..575 | 260 | 91.3 | Minus |
CG2071-PA | 780 | Ser6-RA | 84..133 | 713..664 | 250 | 100 | Minus |
CG1304-PA | 783 | CG1304-RA | 85..133 | 712..664 | 220 | 97.9 | Minus |
CG1304-PA | 783 | CG1304-RA | 628..692 | 168..104 | 200 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 901 | CG2071-RA | 102..795 | 713..19 | 3450 | 99.9 | Minus |
CG1304-RA | 893 | CG1304-RA | 101..753 | 712..59 | 2005 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20962711..20963404 | 19..713 | 3425 | 99.9 | Plus |
X | 23542271 | X | 20964667..20965319 | 59..712 | 1915 | 87.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:35:54 has no hits.
BO13125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:36 Download gff for
BO13125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-PA | 84..780 | 15..713 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:24 Download gff for
BO13125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2071-PA | 84..780 | 15..713 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:07 Download gff for
BO13125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 102..799 | 14..713 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:33 Download gff for
BO13125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 102..799 | 14..713 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:33 Download gff for
BO13125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20962707..20963404 | 14..713 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:07 Download gff for
BO13125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20833734..20834431 | 14..713 | 99 | | Plus |
BO13125.5prime Sequence
705 bp (693 high quality bases) assembled on 2006-05-08
> BO13125.5prime
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATT
BO13125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2071-PA | 780 | Ser6-RA | 1..689 | 17..705 | 3445 | 100 | Plus |
CG1304-PA | 783 | CG1304-RA | 253..542 | 269..558 | 1150 | 95.8 | Plus |
CG1304-PA | 783 | CG1304-RA | 85..221 | 101..237 | 460 | 93.4 | Plus |
CG1304-PA | 783 | CG1304-RA | 628..686 | 644..702 | 195 | 93.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 901 | CG2071-RA | 19..707 | 17..705 | 3445 | 100 | Plus |
CG1304-RA | 893 | CG1304-RA | 34..702 | 34..702 | 2120 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20962799..20963487 | 705..17 | 3445 | 100 | Minus |
X | 23542271 | X | 20964718..20965386 | 702..34 | 2070 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:06:15 has no hits.
BO13125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:37 Download gff for
BO13125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-PA | 1..689 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:25 Download gff for
BO13125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2071-PA | 1..689 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:31 Download gff for
BO13125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..707 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:07 Download gff for
BO13125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..707 | 17..705 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:07 Download gff for
BO13125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20962799..20963487 | 17..705 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:31 Download gff for
BO13125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20833826..20834514 | 17..705 | 100 | | Minus |
BO13125.complete Sequence
811 bp assembled on 2006-10-11
GenBank Submission: FJ632686
> BO13125.complete
GAAGTTATCAGTCGACATGACATTCGGCAAAGTAGCGATTTTGCTCTGCA
GCTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTG
AACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCA
CCAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTC
TGACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGAC
GTGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGC
GGGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGG
TAATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTG
CGACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCT
ACCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGG
GAAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACC
CTAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATT
TGAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATG
GCGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCC
GGATTCGTCGTGGACGGATGTGGGTCCACCTACCCGGACGGATATGCCAG
GGTCTTTTACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCGCAAGCT
TTCTAGACCAT
BO13125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 780 | CG2071-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
CG1304-RA | 783 | CG1304-PA | 18..737 | 34..753 | 2100 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-RA | 901 | CG2071-RA | 19..795 | 17..793 | 3885 | 100 | Plus |
CG1304-RA | 893 | CG1304-RA | 34..753 | 34..753 | 2100 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20962711..20963487 | 793..17 | 3885 | 100 | Minus |
X | 23542271 | X | 20964667..20965386 | 753..34 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:14:25 has no hits.
BO13125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:36 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 1..780 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:35 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 15..795 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:28 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..795 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:36 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 15..795 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:32 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ser6-RA | 19..795 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:32 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20962709..20963487 | 17..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:28 Download gff for
BO13125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20833736..20834514 | 17..795 | 99 | | Minus |
BO13125.pep Sequence
Translation from 16 to 811
> BO13125.pep
MTFGKVAILLCSFLLFLVLPVQSAPGKLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTVDT
PADVDVVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFGFEGELC
LLHQVDNGACNGDSGGPAVYNNQLVGVAGFVVDGCGSTYPDGYARVFYFK
DWIKKHSDVASFLDH
BO13125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ser6-PA | 259 | CG2071-PA | 1..259 | 1..259 | 1361 | 100 | Plus |
CG1304-PA | 260 | CG1304-PA | 5..259 | 5..259 | 1127 | 82.7 | Plus |
CG9676-PA | 251 | CG9676-PA | 27..251 | 31..259 | 508 | 46.1 | Plus |
CG32523-PA | 262 | CG32523-PA | 11..256 | 8..253 | 452 | 42.2 | Plus |
CG4653-PA | 254 | CG4653-PA | 37..253 | 44..257 | 422 | 41.2 | Plus |