Clone BO13128 Report

Search the DGRC for BO13128

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG2811-RA
Protein status:BO13128.pep: validated full length
Sequenced Size:505

Clone Sequence Records

BO13128.3prime Sequence

503 bp (502 high quality bases) assembled on 2006-05-08

> BO13128.3prime
ATGGTCTAGAAAGCTTGCGTAAGAAAGATCATCTCTGGCTGAAACAGTGC
GTACTGACTTTTCATTGTACGGCCTCTCCGGCGTGTTGTGGTACGAGATC
AGCAGCTCCTTGGCCAGCATCTTGTCTGGGAAGTTGCGAATCAGGTACAG
CCAGCACTGAATGGTTTCATTCTGTTCCATTAATATGGTTTGTTGCTCGC
GATCATAGTAGTCCGGGTAGTCTTCTAGTATGTCCAGTTTGGAGAGCATG
GTCTCGTCCACTTCGTAGACTTCGCCTTCTATGTGGTTCCCCTCACCCGG
GCGGGCGAGCAGAAATGGGATGTTGTAGCGGGTTCCGACAACCAGGGGAA
ACTTCGTTTCCGTTTTCCCCCTTCCAAGGAATCGGGCTTGGCCGTTCTCC
TTTTTCGTCAGCCAGTGGTGATTGGGCTCACCGCGCTTCAACGTGCCATA
CACAAAGACCCTTGCCGCCATTCTCAGCTTTTCAGCCATGTCGACTGATA
ACT

BO13128.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-PA 474 CG2811-RA 1..471 489..19 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-RA 720 CG2811-RA 90..560 489..19 2355 100 Minus
CG2811-RB 669 CG2811-RB 90..520 489..59 2155 100 Minus
CG2811-RC 566 CG2811-RC 1..417 475..59 2085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24940072..24940394 167..489 1615 100 Plus
2R 25286936 2R 24939866..24940013 19..166 740 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:17:43 has no hits.

BO13128.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:39 Download gff for BO13128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-PA 1..474 16..489 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:28 Download gff for BO13128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-PA 1..474 16..489 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:52 Download gff for BO13128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 84..560 19..496 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:13 Download gff for BO13128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 84..560 19..496 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:13 Download gff for BO13128.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24939866..24940013 19..166 100 <- Plus
2R 24940072..24940398 167..495 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:52 Download gff for BO13128.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20827389..20827536 19..166 100 <- Plus
arm_2R 20827595..20827921 167..495 98 <- Plus

BO13128.5prime Sequence

503 bp (502 high quality bases) assembled on 2006-05-08

> BO13128.5prime
GAAGTTATCAGTCGACATGGCTGAAAAGCTGAGAATGGCGGCAAGGGTCT
TTGTGTATGGCACGTTGAAGCGCGGTGAGCCCAATCACCACTGGCTGACG
AAAAAGGAGAACGGCCAAGCCCGATTCCTTGGAAGGGGGAAAACGGAAAC
GAAGTTTCCCCTGGTTGTCGGAACCCGCTACAACATCCCATTTCTGCTCG
CCCGCCCGGGTGAGGGGAACCACATAGAAGGCGAAGTCTACGAAGTGGAC
GAGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTA
TGATCGCGAGCAACAAACCATATTAATGGAACAGAATGAAACCATTCAGT
GCTGGCTGTACCTGATTCGCAACTTCCCAGACAAGATGCTGGCCAAGGAG
CTGCTGATCTCGTACCACAACACGCCGGAGAGGCCGTACAATGAAAAGTC
AGTACGCACTGTTTCAGCCAGAGATGATCTTTCTTACGCAAGCTTTCTAG
ACC

BO13128.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-PA 474 CG2811-RA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-RA 720 CG2811-RA 90..560 17..487 2355 100 Plus
CG2811-RB 669 CG2811-RB 90..520 17..447 2155 100 Plus
CG2811-RC 566 CG2811-RC 1..417 31..447 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24940072..24940394 339..17 1615 100 Minus
2R 25286936 2R 24939866..24940013 487..340 740 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:43:20 has no hits.

BO13128.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:40 Download gff for BO13128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-PA 1..474 17..490 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:29 Download gff for BO13128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-PA 1..474 17..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:56 Download gff for BO13128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 84..560 10..487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:35 Download gff for BO13128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 84..560 10..487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:35 Download gff for BO13128.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24939866..24940013 340..487 100 <- Minus
2R 24940072..24940398 11..339 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:56 Download gff for BO13128.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20827389..20827536 340..487 100 <- Minus
arm_2R 20827595..20827921 11..339 98 <- Minus

BO13128.complete Sequence

505 bp assembled on 2006-10-11

GenBank Submission: FJ632687

> BO13128.complete
GAAGTTATCAGTCGACATGGCTGAAAAGCTGAGAATGGCGGCAAGGGTCT
TTGTGTATGGCACGTTGAAGCGCGGTGAGCCCAATCACCACTGGCTGACG
AAAAAGGAGAACGGCCAAGCCCGATTCCTTGGAAGGGGGAAAACGGAAAC
GAAGTTTCCCCTGGTTGTCGGAACCCGCTACAACATCCCATTTCTGCTCG
CCCGCCCGGGTGAGGGGAACCACATAGAAGGCGAAGTCTACGAAGTGGAC
GAGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTA
TGATCGCGAGCAACAAACCATATTAATGGAACAGAATGAAACCATTCAGT
GCTGGCTGTACCTGATTCGCAACTTCCCAGACAAGATGCTGGCCAAGGAG
CTGCTGATCTCGTACCACAACACGCCGGAGAGGCCGTACAATGAAAAGTC
AGTACGCACTGTTTCAGCCAGAGATGATCTTTCTTACGCAAGCTTTCTAG
ACCAT

BO13128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-RA 474 CG2811-PA 1..471 17..487 2355 100 Plus
CG2811-RB 474 CG2811-PB 1..431 17..447 2155 100 Plus
CG2811-RC 456 CG2811-PC 1..413 35..447 2065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-RA 720 CG2811-RA 90..560 17..487 2355 100 Plus
CG2811-RB 669 CG2811-RB 90..520 17..447 2155 100 Plus
CG2811-RC 566 CG2811-RC 1..417 31..447 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24940072..24940394 339..17 1615 100 Minus
2R 25286936 2R 24939866..24940013 487..340 740 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:41 has no hits.

BO13128.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:01 Download gff for BO13128.complete
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 1..474 17..490 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:26 Download gff for BO13128.complete
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 71..547 10..487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:24 Download gff for BO13128.complete
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 90..560 17..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:20 Download gff for BO13128.complete
Subject Subject Range Query Range Percent Splice Strand
CG2811-RA 90..560 17..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:20 Download gff for BO13128.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24939863..24940013 340..489 98 <- Minus
2R 24940072..24940394 17..339 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:24 Download gff for BO13128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20827386..20827536 340..489 98 <- Minus
arm_2R 20827595..20827917 17..339 100   Minus

BO13128.pep Sequence

Translation from 16 to 505

> BO13128.pep
MAEKLRMAARVFVYGTLKRGEPNHHWLTKKENGQARFLGRGKTETKFPLV
VGTRYNIPFLLARPGEGNHIEGEVYEVDETMLSKLDILEDYPDYYDREQQ
TILMEQNETIQCWLYLIRNFPDKMLAKELLISYHNTPERPYNEKSVRTVS
ARDDLSYASFLDH

BO13128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2811-PA 157 CG2811-PA 1..157 1..157 835 100 Plus
CG2811-PB 157 CG2811-PB 1..143 1..143 768 100 Plus
CG2811-PC 151 CG2811-PC 1..137 7..143 740 100 Plus
Tina-1-PA 167 CG2803-PA 4..163 2..157 336 43.8 Plus
Tina-1-PB 84 CG2803-PB 1..80 81..157 139 38.8 Plus