Clone Sequence Records
BO13128.3prime Sequence
503 bp (502 high quality bases) assembled on 2006-05-08
> BO13128.3prime
ATGGTCTAGAAAGCTTGCGTAAGAAAGATCATCTCTGGCTGAAACAGTGC
GTACTGACTTTTCATTGTACGGCCTCTCCGGCGTGTTGTGGTACGAGATC
AGCAGCTCCTTGGCCAGCATCTTGTCTGGGAAGTTGCGAATCAGGTACAG
CCAGCACTGAATGGTTTCATTCTGTTCCATTAATATGGTTTGTTGCTCGC
GATCATAGTAGTCCGGGTAGTCTTCTAGTATGTCCAGTTTGGAGAGCATG
GTCTCGTCCACTTCGTAGACTTCGCCTTCTATGTGGTTCCCCTCACCCGG
GCGGGCGAGCAGAAATGGGATGTTGTAGCGGGTTCCGACAACCAGGGGAA
ACTTCGTTTCCGTTTTCCCCCTTCCAAGGAATCGGGCTTGGCCGTTCTCC
TTTTTCGTCAGCCAGTGGTGATTGGGCTCACCGCGCTTCAACGTGCCATA
CACAAAGACCCTTGCCGCCATTCTCAGCTTTTCAGCCATGTCGACTGATA
ACT
BO13128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-PA | 474 | CG2811-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-RA | 720 | CG2811-RA | 90..560 | 489..19 | 2355 | 100 | Minus |
CG2811-RB | 669 | CG2811-RB | 90..520 | 489..59 | 2155 | 100 | Minus |
CG2811-RC | 566 | CG2811-RC | 1..417 | 475..59 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24940072..24940394 | 167..489 | 1615 | 100 | Plus |
2R | 25286936 | 2R | 24939866..24940013 | 19..166 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:43 has no hits.
BO13128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:39 Download gff for
BO13128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-PA | 1..474 | 16..489 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:28 Download gff for
BO13128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-PA | 1..474 | 16..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:52 Download gff for
BO13128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 84..560 | 19..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:13 Download gff for
BO13128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 84..560 | 19..496 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:13 Download gff for
BO13128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24939866..24940013 | 19..166 | 100 | <- | Plus |
2R | 24940072..24940398 | 167..495 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:52 Download gff for
BO13128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20827389..20827536 | 19..166 | 100 | <- | Plus |
arm_2R | 20827595..20827921 | 167..495 | 98 | <- | Plus |
BO13128.5prime Sequence
503 bp (502 high quality bases) assembled on 2006-05-08
> BO13128.5prime
GAAGTTATCAGTCGACATGGCTGAAAAGCTGAGAATGGCGGCAAGGGTCT
TTGTGTATGGCACGTTGAAGCGCGGTGAGCCCAATCACCACTGGCTGACG
AAAAAGGAGAACGGCCAAGCCCGATTCCTTGGAAGGGGGAAAACGGAAAC
GAAGTTTCCCCTGGTTGTCGGAACCCGCTACAACATCCCATTTCTGCTCG
CCCGCCCGGGTGAGGGGAACCACATAGAAGGCGAAGTCTACGAAGTGGAC
GAGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTA
TGATCGCGAGCAACAAACCATATTAATGGAACAGAATGAAACCATTCAGT
GCTGGCTGTACCTGATTCGCAACTTCCCAGACAAGATGCTGGCCAAGGAG
CTGCTGATCTCGTACCACAACACGCCGGAGAGGCCGTACAATGAAAAGTC
AGTACGCACTGTTTCAGCCAGAGATGATCTTTCTTACGCAAGCTTTCTAG
ACC
BO13128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-PA | 474 | CG2811-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-RA | 720 | CG2811-RA | 90..560 | 17..487 | 2355 | 100 | Plus |
CG2811-RB | 669 | CG2811-RB | 90..520 | 17..447 | 2155 | 100 | Plus |
CG2811-RC | 566 | CG2811-RC | 1..417 | 31..447 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24940072..24940394 | 339..17 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 24939866..24940013 | 487..340 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:43:20 has no hits.
BO13128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:40 Download gff for
BO13128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-PA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:29 Download gff for
BO13128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-PA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:39:56 Download gff for
BO13128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 84..560 | 10..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:35 Download gff for
BO13128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 84..560 | 10..487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:35 Download gff for
BO13128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24939866..24940013 | 340..487 | 100 | <- | Minus |
2R | 24940072..24940398 | 11..339 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:39:56 Download gff for
BO13128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20827389..20827536 | 340..487 | 100 | <- | Minus |
arm_2R | 20827595..20827921 | 11..339 | 98 | <- | Minus |
BO13128.complete Sequence
505 bp assembled on 2006-10-11
GenBank Submission: FJ632687
> BO13128.complete
GAAGTTATCAGTCGACATGGCTGAAAAGCTGAGAATGGCGGCAAGGGTCT
TTGTGTATGGCACGTTGAAGCGCGGTGAGCCCAATCACCACTGGCTGACG
AAAAAGGAGAACGGCCAAGCCCGATTCCTTGGAAGGGGGAAAACGGAAAC
GAAGTTTCCCCTGGTTGTCGGAACCCGCTACAACATCCCATTTCTGCTCG
CCCGCCCGGGTGAGGGGAACCACATAGAAGGCGAAGTCTACGAAGTGGAC
GAGACCATGCTCTCCAAACTGGACATACTAGAAGACTACCCGGACTACTA
TGATCGCGAGCAACAAACCATATTAATGGAACAGAATGAAACCATTCAGT
GCTGGCTGTACCTGATTCGCAACTTCCCAGACAAGATGCTGGCCAAGGAG
CTGCTGATCTCGTACCACAACACGCCGGAGAGGCCGTACAATGAAAAGTC
AGTACGCACTGTTTCAGCCAGAGATGATCTTTCTTACGCAAGCTTTCTAG
ACCAT
BO13128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-RA | 474 | CG2811-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
CG2811-RB | 474 | CG2811-PB | 1..431 | 17..447 | 2155 | 100 | Plus |
CG2811-RC | 456 | CG2811-PC | 1..413 | 35..447 | 2065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-RA | 720 | CG2811-RA | 90..560 | 17..487 | 2355 | 100 | Plus |
CG2811-RB | 669 | CG2811-RB | 90..520 | 17..447 | 2155 | 100 | Plus |
CG2811-RC | 566 | CG2811-RC | 1..417 | 31..447 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24940072..24940394 | 339..17 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 24939866..24940013 | 487..340 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:41 has no hits.
BO13128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:01 Download gff for
BO13128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:26 Download gff for
BO13128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 71..547 | 10..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:24 Download gff for
BO13128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 90..560 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:20 Download gff for
BO13128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2811-RA | 90..560 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:20 Download gff for
BO13128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24939863..24940013 | 340..489 | 98 | <- | Minus |
2R | 24940072..24940394 | 17..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:24 Download gff for
BO13128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20827386..20827536 | 340..489 | 98 | <- | Minus |
arm_2R | 20827595..20827917 | 17..339 | 100 | | Minus |
BO13128.pep Sequence
Translation from 16 to 505
> BO13128.pep
MAEKLRMAARVFVYGTLKRGEPNHHWLTKKENGQARFLGRGKTETKFPLV
VGTRYNIPFLLARPGEGNHIEGEVYEVDETMLSKLDILEDYPDYYDREQQ
TILMEQNETIQCWLYLIRNFPDKMLAKELLISYHNTPERPYNEKSVRTVS
ARDDLSYASFLDH
BO13128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2811-PA | 157 | CG2811-PA | 1..157 | 1..157 | 835 | 100 | Plus |
CG2811-PB | 157 | CG2811-PB | 1..143 | 1..143 | 768 | 100 | Plus |
CG2811-PC | 151 | CG2811-PC | 1..137 | 7..143 | 740 | 100 | Plus |
Tina-1-PA | 167 | CG2803-PA | 4..163 | 2..157 | 336 | 43.8 | Plus |
Tina-1-PB | 84 | CG2803-PB | 1..80 | 81..157 | 139 | 38.8 | Plus |