Clone BO13134 Report

Search the DGRC for BO13134

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL11-RA
Protein status:BO13134.pep: validated full length
Sequenced Size:622

Clone Sequence Records

BO13134.3prime Sequence

620 bp (619 high quality bases) assembled on 2006-05-08

> BO13134.3prime
ATGGTCTAGAAAGCTTGCGCCCGTGCGCAACATCTTTGCTTCCCGCTTCT
CCTGCAACTCGCGCCGTTGCTGTTCCACAATTAACTTGCGCTCCTCCAGG
AACTCGCCATAGGCCGCCGGATCTATTTCCCTGACCACTTTGATGCCACA
GGTCCGAGCAATGCTGATGAGCATCTCACACATTTGCTGCATGGTAAGAA
GTACATTGGGCGGGTCCTGAATCTTAATAGCTGCAATCTCGTACAAATGC
TTGAGAGTGATCATGCCGGCAACCTCCTTGCCAGGAGTCATGGTGCCCCT
TTGTATGCCCGCCGCTTGCTTCAGGAAAAATGTGGCCGGCGGATGGTGGA
TGGCCAAGTCGTAGCTGCGATCGCTGTTTACGGAAATTCTGCACGGCAGC
GGTACGCCCTCTTTCATTTCCGCGGTCTTGGCATTAAAGTCCTTGCAGAA
AGCGGCGATATTAATCGCTCTCTGTCCCAACATCGGTCCCAATGGCGGAC
CTGCAGCAGCCATTCCCGCAGGTATATTCGTCTTCAGTTTGCTCGTGTGC
GTCACACGTTCCACCGTCTTCTTTAGCGATTTCAGCTTACCCGCTGCCTT
CGACATGTCGACTGATAACT

BO13134.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3351-PA 591 mRpL11-RA 1..588 606..19 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 734 CG3351-RA 87..674 606..19 2940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512115..14512403 475..187 1445 100 Minus
3R 32079331 3R 14512462..14512631 188..19 850 100 Minus
3R 32079331 3R 14511924..14512058 606..472 675 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:37:12 has no hits.

BO13134.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:48 Download gff for BO13134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3351-PA 1..591 18..606 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:42 Download gff for BO13134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3351-PA 1..591 18..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:41 Download gff for BO13134.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 10..616 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:25 Download gff for BO13134.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 10..616 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:25 Download gff for BO13134.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14511914..14512058 472..616 97 -> Minus
3R 14512119..14512403 187..471 100 -> Minus
3R 14512464..14512638 10..186 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:41 Download gff for BO13134.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10337636..10337780 472..616 97 -> Minus
arm_3R 10337841..10338125 187..471 100 -> Minus
arm_3R 10338186..10338360 10..186 97   Minus

BO13134.5prime Sequence

620 bp (619 high quality bases) assembled on 2006-05-08

> BO13134.5prime
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCGCAAGCTTTCTAGACC

BO13134.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3351-PA 591 mRpL11-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 734 CG3351-RA 87..674 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512115..14512403 148..436 1445 100 Plus
3R 32079331 3R 14512462..14512631 435..604 850 100 Plus
3R 32079331 3R 14511924..14512058 17..151 675 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:30:29 has no hits.

BO13134.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:49 Download gff for BO13134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3351-PA 1..591 17..605 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:44 Download gff for BO13134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3351-PA 1..591 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:37 Download gff for BO13134.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 7..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:21 Download gff for BO13134.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 77..681 7..613 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:21 Download gff for BO13134.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14511914..14512058 7..151 97 -> Plus
3R 14512119..14512403 152..436 100 -> Plus
3R 14512464..14512638 437..613 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:37 Download gff for BO13134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10337636..10337780 7..151 97 -> Plus
arm_3R 10337841..10338125 152..436 100 -> Plus
arm_3R 10338186..10338360 437..613 97   Plus

BO13134.complete Sequence

622 bp assembled on 2006-10-11

GenBank Submission: FJ632688

> BO13134.complete
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCGCAAGCTTTCTAGACCAT

BO13134.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 591 CG3351-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-RA 734 CG3351-RA 87..674 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512115..14512403 148..436 1445 100 Plus
3R 32079331 3R 14512462..14512631 435..604 850 100 Plus
3R 32079331 3R 14511924..14512058 17..151 675 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:44 has no hits.

BO13134.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:50 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 1..591 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:11 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 47..651 7..613 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:51 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 87..674 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:50 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 47..651 7..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:25 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL11-RA 87..674 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:25 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14511924..14512058 17..151 100 -> Plus
3R 14512119..14512403 152..436 100 -> Plus
3R 14512464..14512631 437..606 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:51 Download gff for BO13134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338186..10338353 437..606 98   Plus
arm_3R 10337646..10337780 17..151 100 -> Plus
arm_3R 10337841..10338125 152..436 100 -> Plus

BO13134.pep Sequence

Translation from 16 to 622

> BO13134.pep
MSKAAGKLKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINI
AAFCKDFNAKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAG
IQRGTMTPGKEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEMLISIA
RTCGIKVVREIDPAAYGEFLEERKLIVEQQRRELQEKREAKMLRTGASFL
DH

BO13134.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL11-PA 196 CG3351-PA 1..196 1..196 996 100 Plus