Clone Sequence Records
BO13134.3prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-08
> BO13134.3prime
ATGGTCTAGAAAGCTTGCGCCCGTGCGCAACATCTTTGCTTCCCGCTTCT
CCTGCAACTCGCGCCGTTGCTGTTCCACAATTAACTTGCGCTCCTCCAGG
AACTCGCCATAGGCCGCCGGATCTATTTCCCTGACCACTTTGATGCCACA
GGTCCGAGCAATGCTGATGAGCATCTCACACATTTGCTGCATGGTAAGAA
GTACATTGGGCGGGTCCTGAATCTTAATAGCTGCAATCTCGTACAAATGC
TTGAGAGTGATCATGCCGGCAACCTCCTTGCCAGGAGTCATGGTGCCCCT
TTGTATGCCCGCCGCTTGCTTCAGGAAAAATGTGGCCGGCGGATGGTGGA
TGGCCAAGTCGTAGCTGCGATCGCTGTTTACGGAAATTCTGCACGGCAGC
GGTACGCCCTCTTTCATTTCCGCGGTCTTGGCATTAAAGTCCTTGCAGAA
AGCGGCGATATTAATCGCTCTCTGTCCCAACATCGGTCCCAATGGCGGAC
CTGCAGCAGCCATTCCCGCAGGTATATTCGTCTTCAGTTTGCTCGTGTGC
GTCACACGTTCCACCGTCTTCTTTAGCGATTTCAGCTTACCCGCTGCCTT
CGACATGTCGACTGATAACT
BO13134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3351-PA | 591 | mRpL11-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 734 | CG3351-RA | 87..674 | 606..19 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512115..14512403 | 475..187 | 1445 | 100 | Minus |
3R | 32079331 | 3R | 14512462..14512631 | 188..19 | 850 | 100 | Minus |
3R | 32079331 | 3R | 14511924..14512058 | 606..472 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:37:12 has no hits.
BO13134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:48 Download gff for
BO13134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3351-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:42 Download gff for
BO13134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3351-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:41 Download gff for
BO13134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 10..616 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:25 Download gff for
BO13134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 10..616 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:25 Download gff for
BO13134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14511914..14512058 | 472..616 | 97 | -> | Minus |
3R | 14512119..14512403 | 187..471 | 100 | -> | Minus |
3R | 14512464..14512638 | 10..186 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:41 Download gff for
BO13134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10337636..10337780 | 472..616 | 97 | -> | Minus |
arm_3R | 10337841..10338125 | 187..471 | 100 | -> | Minus |
arm_3R | 10338186..10338360 | 10..186 | 97 | | Minus |
BO13134.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-08
> BO13134.5prime
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCGCAAGCTTTCTAGACC
BO13134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3351-PA | 591 | mRpL11-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 734 | CG3351-RA | 87..674 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512115..14512403 | 148..436 | 1445 | 100 | Plus |
3R | 32079331 | 3R | 14512462..14512631 | 435..604 | 850 | 100 | Plus |
3R | 32079331 | 3R | 14511924..14512058 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:30:29 has no hits.
BO13134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:49 Download gff for
BO13134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3351-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:44 Download gff for
BO13134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3351-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:37 Download gff for
BO13134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 7..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:21 Download gff for
BO13134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 77..681 | 7..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:21 Download gff for
BO13134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14511914..14512058 | 7..151 | 97 | -> | Plus |
3R | 14512119..14512403 | 152..436 | 100 | -> | Plus |
3R | 14512464..14512638 | 437..613 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:37 Download gff for
BO13134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10337636..10337780 | 7..151 | 97 | -> | Plus |
arm_3R | 10337841..10338125 | 152..436 | 100 | -> | Plus |
arm_3R | 10338186..10338360 | 437..613 | 97 | | Plus |
BO13134.complete Sequence
622 bp assembled on 2006-10-11
GenBank Submission: FJ632688
> BO13134.complete
GAAGTTATCAGTCGACATGTCGAAGGCAGCGGGTAAGCTGAAATCGCTAA
AGAAGACGGTGGAACGTGTGACGCACACGAGCAAACTGAAGACGAATATA
CCTGCGGGAATGGCTGCTGCAGGTCCGCCATTGGGACCGATGTTGGGACA
GAGAGCGATTAATATCGCCGCTTTCTGCAAGGACTTTAATGCCAAGACCG
CGGAAATGAAAGAGGGCGTACCGCTGCCGTGCAGAATTTCCGTAAACAGC
GATCGCAGCTACGACTTGGCCATCCACCATCCGCCGGCCACATTTTTCCT
GAAGCAAGCGGCGGGCATACAAAGGGGCACCATGACTCCTGGCAAGGAGG
TTGCCGGCATGATCACTCTCAAGCATTTGTACGAGATTGCAGCTATTAAG
ATTCAGGACCCGCCCAATGTACTTCTTACCATGCAGCAAATGTGTGAGAT
GCTCATCAGCATTGCTCGGACCTGTGGCATCAAAGTGGTCAGGGAAATAG
ATCCGGCGGCCTATGGCGAGTTCCTGGAGGAGCGCAAGTTAATTGTGGAA
CAGCAACGGCGCGAGTTGCAGGAGAAGCGGGAAGCAAAGATGTTGCGCAC
GGGCGCAAGCTTTCTAGACCAT
BO13134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 591 | CG3351-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-RA | 734 | CG3351-RA | 87..674 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512115..14512403 | 148..436 | 1445 | 100 | Plus |
3R | 32079331 | 3R | 14512462..14512631 | 435..604 | 850 | 100 | Plus |
3R | 32079331 | 3R | 14511924..14512058 | 17..151 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:44 has no hits.
BO13134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:50 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:11 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 47..651 | 7..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:51 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 87..674 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:50 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 47..651 | 7..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:25 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL11-RA | 87..674 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:25 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14511924..14512058 | 17..151 | 100 | -> | Plus |
3R | 14512119..14512403 | 152..436 | 100 | -> | Plus |
3R | 14512464..14512631 | 437..606 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:51 Download gff for
BO13134.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338186..10338353 | 437..606 | 98 | | Plus |
arm_3R | 10337646..10337780 | 17..151 | 100 | -> | Plus |
arm_3R | 10337841..10338125 | 152..436 | 100 | -> | Plus |
BO13134.pep Sequence
Translation from 16 to 622
> BO13134.pep
MSKAAGKLKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINI
AAFCKDFNAKTAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAG
IQRGTMTPGKEVAGMITLKHLYEIAAIKIQDPPNVLLTMQQMCEMLISIA
RTCGIKVVREIDPAAYGEFLEERKLIVEQQRRELQEKREAKMLRTGASFL
DH
BO13134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL11-PA | 196 | CG3351-PA | 1..196 | 1..196 | 996 | 100 | Plus |