Clone Sequence Records
BO13135.3prime Sequence
498 bp (497 high quality bases) assembled on 2006-05-08
> BO13135.3prime
ATGGTCTAGAAAGCTTGCTGCTTTTGATCTTGACTTCTTCTTGTTGGTCG
TTTCTTTGATGGTTTCGTTATAGACTGGACGGCGGTACTGGTATCCAGCC
CTGCTGTTGTAGGTGTGTCCCACCAGCTGCTGTTGCGGCAACACCACCTG
CTGAGCCACCGGCGCCACGTACTGAGCCCTCTGGACAATCTGCTGCTGGA
CGGGCTGCTGGACGAAGGATTGGGCCACAACCACGGGGCGAGCCACTGGA
TGAGCAACTGGCCGAGCGATGGGAGCAGGGGCGGCGAAGACGGGACGGGG
AGCAGCGGCCACAGGACGAGGAGCAGGTGCGGCAGCCACCGGTGCAGGTT
CGTCGATATCAATGTACTCCGGCTCCGGGGTGGCAATATCCTGAGGATTG
GGTCCCTGGGTGGCGGAGTCAGGAAGCTGAGCTCCAGCAGCAATGCCCAC
AAGGGCCAAAGCCAATAGCAAAAAGAAATTTCATGTCGACTGATAACT
BO13135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-PB | 468 | CG12607-RB | 7..465 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 691 | CG12607-RB | 103..567 | 484..19 | 2305 | 99.8 | Minus |
CG12607-RD | 794 | CG12607-RD | 103..516 | 484..70 | 2050 | 99.8 | Minus |
CG12607-RC | 1001 | CG12607-RC | 103..516 | 484..70 | 2050 | 99.8 | Minus |
CG12607-RD | 794 | CG12607-RD | 616..670 | 73..19 | 260 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4447180..4447587 | 477..70 | 2040 | 100 | Minus |
3L | 28110227 | 3L | 4447894..4447948 | 73..19 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:16:06 has no hits.
BO13135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:51 Download gff for
BO13135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-PB | 1..468 | 15..484 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:45 Download gff for
BO13135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-PB | 1..468 | 15..484 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:51 Download gff for
BO13135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..572 | 14..484 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:58 Download gff for
BO13135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..572 | 14..484 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:58 Download gff for
BO13135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4447174..4447587 | 70..485 | 99 | -> | Minus |
3L | 4447898..4447953 | 14..69 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:51 Download gff for
BO13135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4447174..4447587 | 70..485 | 99 | -> | Minus |
arm_3L | 4447898..4447953 | 14..69 | 96 | | Minus |
BO13135.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO13135.5prime
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAAGAAGTCAAGATCAAAAGCAGCAAGCTTTCTAGACC
BO13135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-PB | 468 | CG12607-RB | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 691 | CG12607-RB | 103..567 | 17..481 | 2325 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RC | 1001 | CG12607-RC | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 616..670 | 427..481 | 260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4447176..4447587 | 19..430 | 2060 | 100 | Plus |
3L | 28110227 | 3L | 4447894..4447948 | 427..481 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:56:15 has no hits.
BO13135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:52 Download gff for
BO13135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-PB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:47 Download gff for
BO13135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-PB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:14 Download gff for
BO13135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..572 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:36 Download gff for
BO13135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..572 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:36 Download gff for
BO13135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4447174..4447587 | 16..430 | 99 | -> | Plus |
3L | 4447898..4447953 | 431..486 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:14 Download gff for
BO13135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4447174..4447587 | 16..430 | 99 | -> | Plus |
arm_3L | 4447898..4447953 | 431..486 | 96 | | Plus |
BO13135.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632689
> BO13135.complete
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAAGAAGTCAAGATCAAAAGCAGCAAGCTTTCTAGACCAT
BO13135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 468 | CG12607-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
CG12607-RD | 420 | CG12607-PD | 1..414 | 17..430 | 2070 | 100 | Plus |
CG12607-RC | 447 | CG12607-PC | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-RB | 691 | CG12607-RB | 103..567 | 17..481 | 2325 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RC | 1001 | CG12607-RC | 103..516 | 17..430 | 2070 | 100 | Plus |
CG12607-RD | 794 | CG12607-RD | 616..670 | 427..481 | 260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4447176..4447587 | 19..430 | 2060 | 100 | Plus |
3L | 28110227 | 3L | 4447894..4447948 | 427..481 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:03 has no hits.
BO13135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:53 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:46 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 101..570 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:25 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..567 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:53 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 101..570 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:38 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12607-RB | 103..567 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:38 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4447175..4447587 | 17..430 | 99 | -> | Plus |
3L | 4447898..4447948 | 431..483 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:25 Download gff for
BO13135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4447175..4447587 | 17..430 | 99 | -> | Plus |
arm_3L | 4447898..4447948 | 431..483 | 96 | | Plus |
BO13135.pep Sequence
Translation from 16 to 499
> BO13135.pep
MKFFLLLALALVGIAAGAQLPDSATQGPNPQDIATPEPEYIDIDEPAPVA
AAPAPRPVAAAPRPVFAAPAPIARPVAHPVARPVVVAQSFVQQPVQQQIV
QRAQYVAPVAQQVVLPQQQLVGHTYNSRAGYQYRRPVYNETIKETTNKKK
SRSKAASFLDH
BO13135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12607-PB | 155 | CG12607-PB | 1..155 | 1..155 | 787 | 100 | Plus |
CG12607-PD | 139 | CG12607-PD | 1..139 | 1..139 | 705 | 99.3 | Plus |
CG12607-PC | 148 | CG12607-PC | 1..138 | 1..138 | 704 | 100 | Plus |