Clone BO13135 Report

Search the DGRC for BO13135

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG12607-RB
Protein status:BO13135.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO13135.3prime Sequence

498 bp (497 high quality bases) assembled on 2006-05-08

> BO13135.3prime
ATGGTCTAGAAAGCTTGCTGCTTTTGATCTTGACTTCTTCTTGTTGGTCG
TTTCTTTGATGGTTTCGTTATAGACTGGACGGCGGTACTGGTATCCAGCC
CTGCTGTTGTAGGTGTGTCCCACCAGCTGCTGTTGCGGCAACACCACCTG
CTGAGCCACCGGCGCCACGTACTGAGCCCTCTGGACAATCTGCTGCTGGA
CGGGCTGCTGGACGAAGGATTGGGCCACAACCACGGGGCGAGCCACTGGA
TGAGCAACTGGCCGAGCGATGGGAGCAGGGGCGGCGAAGACGGGACGGGG
AGCAGCGGCCACAGGACGAGGAGCAGGTGCGGCAGCCACCGGTGCAGGTT
CGTCGATATCAATGTACTCCGGCTCCGGGGTGGCAATATCCTGAGGATTG
GGTCCCTGGGTGGCGGAGTCAGGAAGCTGAGCTCCAGCAGCAATGCCCAC
AAGGGCCAAAGCCAATAGCAAAAAGAAATTTCATGTCGACTGATAACT

BO13135.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-PB 468 CG12607-RB 7..465 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 691 CG12607-RB 103..567 484..19 2305 99.8 Minus
CG12607-RD 794 CG12607-RD 103..516 484..70 2050 99.8 Minus
CG12607-RC 1001 CG12607-RC 103..516 484..70 2050 99.8 Minus
CG12607-RD 794 CG12607-RD 616..670 73..19 260 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4447180..4447587 477..70 2040 100 Minus
3L 28110227 3L 4447894..4447948 73..19 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-10 17:16:06 has no hits.

BO13135.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:51 Download gff for BO13135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-PB 1..468 15..484 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:45 Download gff for BO13135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-PB 1..468 15..484 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:51 Download gff for BO13135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..572 14..484 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:58 Download gff for BO13135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..572 14..484 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:58 Download gff for BO13135.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4447174..4447587 70..485 99 -> Minus
3L 4447898..4447953 14..69 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:51 Download gff for BO13135.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4447174..4447587 70..485 99 -> Minus
arm_3L 4447898..4447953 14..69 96   Minus

BO13135.5prime Sequence

497 bp (496 high quality bases) assembled on 2006-05-08

> BO13135.5prime
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAAGAAGTCAAGATCAAAAGCAGCAAGCTTTCTAGACC

BO13135.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-PB 468 CG12607-RB 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 691 CG12607-RB 103..567 17..481 2325 100 Plus
CG12607-RD 794 CG12607-RD 103..516 17..430 2070 100 Plus
CG12607-RC 1001 CG12607-RC 103..516 17..430 2070 100 Plus
CG12607-RD 794 CG12607-RD 616..670 427..481 260 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4447176..4447587 19..430 2060 100 Plus
3L 28110227 3L 4447894..4447948 427..481 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-04 02:56:15 has no hits.

BO13135.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:52 Download gff for BO13135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-PB 1..468 17..485 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:47 Download gff for BO13135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-PB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:14 Download gff for BO13135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..572 17..486 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:36 Download gff for BO13135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..572 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:36 Download gff for BO13135.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4447174..4447587 16..430 99 -> Plus
3L 4447898..4447953 431..486 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:14 Download gff for BO13135.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4447174..4447587 16..430 99 -> Plus
arm_3L 4447898..4447953 431..486 96   Plus

BO13135.complete Sequence

499 bp assembled on 2006-10-11

GenBank Submission: FJ632689

> BO13135.complete
GAAGTTATCAGTCGACATGAAATTCTTTTTGCTATTGGCTTTGGCCCTTG
TGGGCATTGCTGCTGGAGCTCAGCTTCCTGACTCCGCCACCCAGGGACCC
AATCCTCAGGATATTGCCACCCCGGAGCCGGAGTACATTGATATCGACGA
ACCTGCACCGGTGGCTGCCGCACCTGCTCCTCGTCCTGTGGCCGCTGCTC
CCCGTCCCGTCTTCGCCGCCCCTGCTCCCATCGCTCGGCCAGTTGCTCAT
CCAGTGGCTCGCCCCGTGGTTGTGGCCCAATCCTTCGTCCAGCAGCCCGT
CCAGCAGCAGATTGTCCAGAGGGCTCAGTACGTGGCGCCGGTGGCTCAGC
AGGTGGTGTTGCCGCAACAGCAGCTGGTGGGACACACCTACAACAGCAGG
GCTGGATACCAGTACCGCCGTCCAGTCTATAACGAAACCATCAAAGAAAC
GACCAACAAGAAGAAGTCAAGATCAAAAGCAGCAAGCTTTCTAGACCAT

BO13135.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 468 CG12607-PB 1..465 17..481 2325 100 Plus
CG12607-RD 420 CG12607-PD 1..414 17..430 2070 100 Plus
CG12607-RC 447 CG12607-PC 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-RB 691 CG12607-RB 103..567 17..481 2325 100 Plus
CG12607-RD 794 CG12607-RD 103..516 17..430 2070 100 Plus
CG12607-RC 1001 CG12607-RC 103..516 17..430 2070 100 Plus
CG12607-RD 794 CG12607-RD 616..670 427..481 260 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4447176..4447587 19..430 2060 100 Plus
3L 28110227 3L 4447894..4447948 427..481 260 98.2 Plus
Blast to na_te.dros performed on 2014-11-27 15:57:03 has no hits.

BO13135.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:53 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:46 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 101..570 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:25 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..567 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:53 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 101..570 17..486 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:38 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
CG12607-RB 103..567 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:38 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4447175..4447587 17..430 99 -> Plus
3L 4447898..4447948 431..483 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:25 Download gff for BO13135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4447175..4447587 17..430 99 -> Plus
arm_3L 4447898..4447948 431..483 96   Plus

BO13135.pep Sequence

Translation from 16 to 499

> BO13135.pep
MKFFLLLALALVGIAAGAQLPDSATQGPNPQDIATPEPEYIDIDEPAPVA
AAPAPRPVAAAPRPVFAAPAPIARPVAHPVARPVVVAQSFVQQPVQQQIV
QRAQYVAPVAQQVVLPQQQLVGHTYNSRAGYQYRRPVYNETIKETTNKKK
SRSKAASFLDH

BO13135.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12607-PB 155 CG12607-PB 1..155 1..155 787 100 Plus
CG12607-PD 139 CG12607-PD 1..139 1..139 705 99.3 Plus
CG12607-PC 148 CG12607-PC 1..138 1..138 704 100 Plus