Clone Sequence Records
BO13136.3prime Sequence
627 bp (626 high quality bases) assembled on 2006-05-08
> BO13136.3prime
ATGGTCTAGAAAGCTTGCAGTGGCTCGACTTGGAGAGGAGTTTTTAGAGT
TGCGAGATACAGATGCAATGCTTTGCGGATCTTGCTGAAGCACGAGACGA
GTAAAGGCTAAGCTGAGGAGAAGTGCCTGGCCTAGAAGCTCGCGCTGGTA
GCGCTCTTGTTGTGAGAATTCGAGGCGTAGGTCAGCGGGAAAGTCGATCT
GTTTGTGCAGCTTCAACGGGGGCTCTGTTTCGGGGATCTGATGTTCCACG
TTGTAATGGGTTCGCATCATGGCCAATATCGTATCCTCGGACGACACGCG
CTCAGTACCCACCATGTGATTAAATAGTCGGGCTGAGAGAAAACGTCGCA
TGTAGTAGACGTTGTTCGTCTTGTTCTCGTCGCCATCTGATCGGGCCATC
AAGGAGAAGCTCATGATTGCGGAAACCTGGGCCTTCTGGATGTTCACGTT
CTGTTGATCGATGCTCCCTGGGTTGCTGCTGGCCTGGGCCATTTGTGGAC
TCTCCATGACGTAGCAATCGGCCACGGGTATCTGGTGAGATACATAGAGG
CATCGGCGGGAAAGTTCTGACAAATGCAGCTTCTTGTCGTTCAGCTCATG
GTGCTGCCAGTGCGTGAGCAGACAGGG
BO13136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-PA | 1119 | CG14450-RA | 508..1116 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-RB | 1506 | CG14450-RB | 585..1193 | 627..19 | 3045 | 100 | Minus |
| CG14450-RA | 1502 | CG14450-RA | 581..1189 | 627..19 | 3045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22726547..22727155 | 19..627 | 3045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:15:24 has no hits.
BO13136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:53 Download gff for
BO13136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-PA | 508..1119 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:48 Download gff for
BO13136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-PA | 508..1119 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:49 Download gff for
BO13136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 581..1192 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:51 Download gff for
BO13136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 581..1192 | 15..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:51 Download gff for
BO13136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22726543..22727155 | 15..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:49 Download gff for
BO13136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22719643..22720255 | 15..627 | 99 | | Plus |
BO13136.5prime Sequence
739 bp (681 high quality bases) assembled on 2006-05-08
> BO13136.5prime
GAAGTTATCAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGA
CAAAATGCCTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCG
GAATGTGACCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCG
TTTGAAGATCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCA
ACTACGACATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAAC
CGTCACGGACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATT
CGGACTGAAGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGA
GCAGTGGGAGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTC
GCGCCCTTTATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGT
ATCTGCTGTAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGAT
TAAAGATCGGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCAC
CATGAGCTGAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGATG
CCTCTATGTATCTCACCAGATACCCGTGGCCGATTGCTACGTCATGGAGA
GTCCACAAATGGCCCAGGCCAGCAACAACCCCAGGGAGCATCGATCAACA
GAACGTGAACATCCAGAAGGCCCAGGTTTCCGCAATCAT
BO13136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-PA | 1119 | CG14450-RA | 1..665 | 17..681 | 3300 | 99.8 | Plus |
| CG14450-PA | 1119 | CG14450-RA | 663..722 | 680..739 | 300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-RA | 1502 | CG14450-RA | 74..795 | 17..739 | 3575 | 99.7 | Plus |
| CG14450-RB | 1506 | CG14450-RB | 74..799 | 17..739 | 3525 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22726941..22727481 | 739..198 | 2630 | 99.4 | Minus |
| 3L | 28110227 | 3L | 22727532..22727716 | 201..17 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:57:33 has no hits.
BO13136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:55:54 Download gff for
BO13136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-PA | 1..722 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:38:50 Download gff for
BO13136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-PA | 1..722 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:21 Download gff for
BO13136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 74..795 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:44 Download gff for
BO13136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 74..795 | 17..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:44 Download gff for
BO13136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22726941..22727477 | 202..739 | 99 | <- | Minus |
| 3L | 22727532..22727716 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:21 Download gff for
BO13136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22720041..22720577 | 202..739 | 99 | <- | Minus |
| arm_3L | 22720632..22720816 | 17..201 | 100 | | Minus |
BO13136.complete Sequence
1150 bp assembled on 2006-10-11
GenBank Submission: FJ632690
> BO13136.complete
GAAGTTATCAGTCGACATGTTGTGCCGGCGATCATTGTTGGGCGTAACGA
CAAAATGCCTAAGACTTTCGTCCACGCAGCAACACAGATCGGGTCAGCCG
GAATGTGACCAAGCCATCGGCCTCTTGCCCGCCTACTCGGATGCAGATCG
TTTGAAGATCTTGAAGACGATTAATGAAAGCAGCATGAATCAGATAGCCA
ACTACGACATAACCAAGGCAAGGGCAACCAAGCTGCAAAACTGGAAGAAC
CGTCACGGACCGCTGCAGGAACTCAGCGACATCCTGTATGTGGAGGGATT
CGGACTGAAGGTGACCACCAAGTTCTTTAAGAGTCTGCTTGCGCCGCCGA
GCAGTGGGAGCGCACAAGTAGGGGAAAATAGACCAAAGACTGCACGAGTC
GCGCCCTTTATAACACCGGCCATGGACGAGGGACAGCGTTCACGTATTGT
ATCTGCTGTAGGGGTGCGCATCGGAGTGACCAGTGTAAGCTGGGCGCGAT
TAAAGATCGGAAGCAACGAAGCTCCCTGTCTGCTCACGCACTGGCAGCAC
CATGAGCTGAACGACAAGAAGCTGCATTTGTCAGAACTTTCCCGCCGATG
CCTCTATGTATCTCACCAGATACCCGTGGCCGATTGCTACGTCATGGAGA
GTCCACAAATGGCCCAGGCCAGCAGCAACCCAGGGAGCATCGATCAACAG
AACGTGAACATCCAGAAGGCCCAGGTTTCCGCAATCATGAGCTTCTCCTT
GATGGCCCGATCAGATGGCGACGAGAACAAGACGAACAACGTCTACTACA
TGCGACGTTTTCTCTCAGCCCGACTATTTAATCACATGGTGGGTACTGAG
CGCGTGTCGTCCGAGGATACGATATTGGCCATGATGCGAACCCATTACAA
CGTGGAACATCAGATCCCCGAAACAGAGCCCCCGTTGAAGCTGCACAAAC
AGATCGACTTTCCCGCTGACCTACGCCTCGAATTCTCACAACAAGAGCGC
TACCAGCGCGAGCTTCTAGGCCAGGCACTTCTCCTCAGCTTAGCCTTTAC
TCGTCTCGTGCTTCAGCAAGATCCGCAAAGCATTGCATCTGTATCTCGCA
ACTCTAAAAACTCCTCTCCAAGTCGAGCCACTGCAAGCTTTCTAGACCAT
BO13136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-RA | 1119 | CG14450-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| CG14450-RB | 189 | CG14450-PB | 1..185 | 17..201 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-RA | 1502 | CG14450-RA | 74..1189 | 17..1132 | 5580 | 100 | Plus |
| CG14450-RB | 1506 | CG14450-RB | 74..1193 | 17..1132 | 5505 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22726547..22727481 | 1132..198 | 4660 | 99.9 | Minus |
| 3L | 28110227 | 3L | 22727532..22727716 | 201..17 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:07:46 has no hits.
BO13136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:52 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 1..1119 | 17..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:43 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 64..1182 | 17..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:29 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 79..1189 | 22..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:52 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 64..1182 | 17..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:04 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 79..1189 | 22..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:04 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22727532..22727711 | 22..201 | 100 | | Minus |
| 3L | 22726545..22727477 | 202..1134 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:29 Download gff for
BO13136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22719645..22720577 | 202..1134 | 99 | <- | Minus |
| arm_3L | 22720632..22720811 | 22..201 | 100 | | Minus |
BO13136.pep Sequence
Translation from 16 to 1150
> BO13136.pep
MLCRRSLLGVTTKCLRLSSTQQHRSGQPECDQAIGLLPAYSDADRLKILK
TINESSMNQIANYDITKARATKLQNWKNRHGPLQELSDILYVEGFGLKVT
TKFFKSLLAPPSSGSAQVGENRPKTARVAPFITPAMDEGQRSRIVSAVGV
RIGVTSVSWARLKIGSNEAPCLLTHWQHHELNDKKLHLSELSRRCLYVSH
QIPVADCYVMESPQMAQASSNPGSIDQQNVNIQKAQVSAIMSFSLMARSD
GDENKTNNVYYMRRFLSARLFNHMVGTERVSSEDTILAMMRTHYNVEHQI
PETEPPLKLHKQIDFPADLRLEFSQQERYQRELLGQALLLSLAFTRLVLQ
QDPQSIASVSRNSKNSSPSRATASFLDH
BO13136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-PA | 372 | CG14450-PA | 1..372 | 1..372 | 1902 | 100 | Plus |
| CG14450-PB | 62 | CG14450-PB | 1..61 | 1..61 | 309 | 100 | Plus |
