Clone BO13137 Report

Search the DGRC for BO13137

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptObp83cd-RA
Protein status:BO13137.pep: Imported from assembly
Sequenced Size:760

Clone Sequence Records

BO13137.complete Sequence

760 bp assembled on 2010-11-19

GenBank Submission: KX794651

> BO13137.complete
GAAGTTATCAGTCGACATGCAGATGAAAAGTGGAATATTAATAGCATTAT
GTCTATGCCTTTCGTTGAACGAAGGCCTGGCCCTTCTGGAGCACGAAGGC
GAGACCATCAACAGATGCATCCAAAACTATGGCGGACTTACTGCGGAAAA
TGCCGAACGTCTAGAACGATTCAAGGAATGGTCGGATAGCTACGAGGAAA
TCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTCGACTTTTACAAT
AACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGACC
CGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCG
AGAGCAGCTGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATG
GAAAGCCACCCGTTCACGGTTATTGACAACATGCCAAACATATCCCCGTC
GGCCAAGGATGCAATGAAGGACTGCCTTCAGGATGTCCACCAGGACGAGT
GGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAATGAACCGATTCCG
TGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAGGAGAAAAC
GCGTCTTTGGAAACTGGAGGCGATGAAGCAAAACCTGGGCATTCCGGCCA
AAGGAGCTCGCATAAGGACCTGCCATCGGCACCGCGGCAGGGACCGATGT
GCCACATATTACAAACAGTTCACCTGCTACGCGATGGCTGTTGCAAGCTT
TCTAGACCAT

BO13137.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 729 CG15582-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 899 CG15582-RA 54..779 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6109269..6109613 398..742 1725 100 Plus
3R 32079331 3R 6108300..6108630 67..397 1655 100 Plus
3R 32079331 3R 6108187..6108237 17..67 255 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:35:55 has no hits.

BO13137.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-19 09:48:56 Download gff for BO13137.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..779 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:27 Download gff for BO13137.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..779 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:28 Download gff for BO13137.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 54..779 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:28 Download gff for BO13137.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6108187..6108237 17..67 100 -> Plus
3R 6108301..6108630 68..397 100 -> Plus
3R 6109269..6109613 398..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:27 Download gff for BO13137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1933909..1933959 17..67 100 -> Plus
arm_3R 1934023..1934352 68..397 100 -> Plus
arm_3R 1934991..1935335 398..744 99   Plus

BO13137.5prime Sequence

625 bp (471 high quality bases) assembled on 2010-02-20

> BO13137.5prime
GAAGGCGAGACCATCAACAGATGCATCCAAAACTATGGCGGACTTACTGC
GGAAAATGCCGAACGTCTAGAACGATTCAAGGAATGGTCGGATAGCTACG
AGGAAATCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTCGACTTT
TACAATAACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGG
AAGACCCGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAAT
CAGGCGAGAGCAGCTGCAAACATGCCTACGAGGGCTTCCACTGCATCACC
AACATGGAAAGCCACCCGTTCACGGTTATTGACAACATGCCAAACATATC
CCCGTCCGCCACGGATGCAATGAAGGACTGCCTTCAGGATGTCCACCAGG
ACGAGTGGAAAAGCTTTCGATGCCTTCGCCTACTATCCTGTCAATGAACC
GATTCCGTGCTTTCACCCGGTGCTTCGTGGACAAGCTGCATAATCTTCGA
GGAAAAAACGCGTCTTTTGGAACTGGAGGCGATGAAGCAAAACCGGGGCT
TTCCGGCCCAGTGAACTCGCATAAGGCCCTGGCATCGGCACCGCGGCAGG
GACCGATGTGCCACATAATACAAAC

BO13137.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 899 CG15582-RA 132..753 1..625 2825 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 01:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6108328..6108630 1..303 1515 100 Plus
3R 32079331 3R 6109269..6109587 304..625 1235 94.4 Plus
Blast to na_te.dros performed on 2015-01-30 01:49:33 has no hits.

BO13137.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 03:28:04 Download gff for BO13137.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 132..753 1..625 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 08:59:38 Download gff for BO13137.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 132..753 1..625 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:56:07 Download gff for BO13137.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 132..753 1..625 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 03:56:07 Download gff for BO13137.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6109269..6109587 304..625 94   Plus
3R 6108328..6108630 1..303 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 08:59:38 Download gff for BO13137.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1934050..1934352 1..303 100 -> Plus
arm_3R 1934991..1935309 304..625 94   Plus

BO13137.3prime Sequence

361 bp (83 high quality bases) assembled on 2010-02-20

> BO13137.3prime
CCTTTAGGCCGGAATGCCCAGGTTTTGCTTCATCGCCTCCAGTTTCCAAA
GACGCGTTTTCTCCTCGAAGATATGCAGCTTGTCCACGAAGCACCGGGTG
AAGCACGGAATCGGTTCATTGACAGGATAGTAGGCGAAGGCATCGAAGCT
CTTCCACTCGTCCTGGAGGACATCCTGAAGGCAGTCCTTCATTGCATCCT
TGGCCGACGGGGATATGTTTGGCATGTTGTCAATAACCGTGAACGGGTGG
CTTTCCATGTTGGTGATGCAGTGGAAGCCCTCGTAGGAATGTTTGCAGCT
GCTCTCGCCTGATTCGAATGGCAGTTCCAATTTCTTTCGGCAGGCTTCGT
ATACGGGTCTT

BO13137.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-RA 899 CG15582-RA 332..691 361..1 1735 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6109269..6109520 258..7 1245 99.6 Minus
3R 32079331 3R 6108528..6108630 361..259 485 98.1 Minus
Blast to na_te.dros performed on 2015-02-10 14:59:29 has no hits.

BO13137.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 03:28:03 Download gff for BO13137.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 332..691 1..361 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 12:17:15 Download gff for BO13137.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 332..691 1..361 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:33:29 Download gff for BO13137.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp83cd-RA 332..691 1..361 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:33:29 Download gff for BO13137.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6108528..6108630 259..361 98 -> Minus
3R 6109269..6109525 1..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 12:17:15 Download gff for BO13137.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1934250..1934352 259..361 98 -> Minus
arm_3R 1934991..1935247 1..258 99   Minus

BO13137.pep Sequence

Translation from 16 to 760

> BO13137.pep
MQMKSGILIALCLCLSLNEGLALLEHEGETINRCIQNYGGLTAENAERLE
RFKEWSDSYEEIPCFTRCYLSEMFDFYNNLTGFNKDGIVGVFGRPVYEAC
RKKLELPFESGESSCKHAYEGFHCITNMESHPFTVIDNMPNISPSAKDAM
KDCLQDVHQDEWKSFDAFAYYPVNEPIPCFTRCFVDKLHIFEEKTRLWKL
EAMKQNLGIPAKGARIRTCHRHRGRDRCATYYKQFTCYAMAVASFLDH

BO13137.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83cd-PA 242 CG15582-PA 1..242 1..242 1334 100 Plus
Obp83ef-PA 245 CG31557-PA 1..230 3..238 200 24.2 Plus