Clone Sequence Records
BO13142.5prime Sequence
674 bp (653 high quality bases) assembled on 2006-05-08
> BO13142.5prime
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCA
AGATGAACTGTGATGATTACGCGC
BO13142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-PA | 780 | CG10075-RA | 1..658 | 17..674 | 3265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 924 | CG10075-RA | 88..745 | 17..674 | 3275 | 99.8 | Plus |
CG9948-RB | 1394 | CG9948-RB | 1079..1238 | 674..515 | 785 | 99.4 | Minus |
CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 515..426 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6957351..6957604 | 515..262 | 1270 | 100 | Minus |
3L | 28110227 | 3L | 6957663..6957852 | 262..73 | 950 | 100 | Minus |
3L | 28110227 | 3L | 6957125..6957284 | 674..515 | 785 | 99.4 | Minus |
3L | 28110227 | 3L | 6957964..6958021 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 08:51:38 has no hits.
BO13142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:03 Download gff for
BO13142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-PA | 1..658 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:03 Download gff for
BO13142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-PA | 1..658 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:47 Download gff for
BO13142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 86..745 | 14..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:49 Download gff for
BO13142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 86..745 | 14..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:49 Download gff for
BO13142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6957125..6957284 | 515..674 | 99 | <- | Minus |
3L | 6957352..6957603 | 263..514 | 100 | <- | Minus |
3L | 6957663..6957851 | 74..262 | 100 | <- | Minus |
3L | 6957965..6958023 | 14..73 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:47 Download gff for
BO13142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6950225..6950384 | 515..674 | 99 | <- | Minus |
arm_3L | 6950452..6950703 | 263..514 | 100 | <- | Minus |
arm_3L | 6950763..6950951 | 74..262 | 100 | <- | Minus |
arm_3L | 6951065..6951123 | 14..73 | 98 | | Minus |
BO13142.3prime Sequence
687 bp (655 high quality bases) assembled on 2006-05-08
> BO13142.3prime
ATGGTCTAGAAAGCTTGCAACCTTGCACTTGTCCAATTCCAACCATGCCA
CTTTCGGCTTGACAATGAACTGATCGCGTGGCAAACTGTCCAGCATGCTG
GCCTGCTGGCGGACGTACTTCACCAGTCGCTCGATCTGCGCGTAATCATC
ACAGTTCATCTCGAAGAAGCGGCGCCACAAGGCGCAGGCCAAAACCCGAT
CGTCGGACATGATGCCCTCGTCGTAGGCGATTAGGGCCGCTTGGAACTGC
TCGGATAAGGTCTCGATTTGCTGACGGGTGCGTGAAGGATTGTGAGCTCC
CAATTTCTTGGCGCGTGTGTTAACATCTCCCCACATCGCCTCCACAATGC
AGTTGCGCAGGAAGCGTCCATCCTCGCCCGTTTCGGAGCCCTCGGCCATG
GAGCGCATCAGGAGTAGCCAAACATGCAGTTCGGTGACCAAGAACCAGGA
GTTAAAGGTATTGGGCAGATTGAAGTCGCGGAAAAAGGTCACATAGTTGA
TCTTGTCGGCGACGCTTTCGTACAGCAGATGACTGGTTACCTTGAGGCGC
GCCTTTGTGTTCGGTGTGAAGCCCACTTTGTTGAGCACTCTCTTCAGAAT
ACCGCCTTCTGCGGCTTCCGCTGTGCCGGGTTTCGTTTTATTGGTATTAT
CCACAACGCCGGTGGATGAACACAAGCGGCATGGCTG
BO13142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-PA | 780 | CG10075-RA | 109..777 | 687..19 | 3320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 924 | CG10075-RA | 196..864 | 687..19 | 3330 | 99.9 | Minus |
CG9948-RB | 1394 | CG9948-RB | 960..1238 | 19..297 | 1380 | 99.6 | Plus |
CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 297..386 | 450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6957006..6957284 | 19..297 | 1380 | 99.6 | Plus |
3L | 28110227 | 3L | 6957351..6957604 | 297..550 | 1270 | 100 | Plus |
3L | 28110227 | 3L | 6957663..6957800 | 550..687 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:28:13 has no hits.
BO13142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:02 Download gff for
BO13142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-PA | 109..780 | 15..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:01 Download gff for
BO13142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-PA | 109..780 | 15..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:46 Download gff for
BO13142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 196..871 | 11..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:34 Download gff for
BO13142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 196..871 | 11..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:34 Download gff for
BO13142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6956999..6957284 | 11..297 | 98 | <- | Plus |
3L | 6957352..6957603 | 298..549 | 100 | <- | Plus |
3L | 6957663..6957800 | 550..687 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:46 Download gff for
BO13142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6950763..6950900 | 550..687 | 100 | | Plus |
arm_3L | 6950452..6950703 | 298..549 | 100 | <- | Plus |
arm_3L | 6950099..6950384 | 11..297 | 98 | <- | Plus |
BO13142.complete Sequence
811 bp assembled on 2006-10-11
GenBank Submission: FJ632691
> BO13142.complete
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCG
AGATGAACTGTGATGATTACGCGCAGATCGAGCGACTGGTGAAGTACGTC
CGCCAGCAGGCCAGCATGCTGGACAGTTTGCCACGCGATCAGTTCATTGT
CAAGCCGAAAGTGGCATGGTTGGAATTGGACAAGTGCAAGGTTGCAAGCT
TTCTAGACCAT
BO13142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 780 | CG10075-PA | 1..777 | 17..793 | 3870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-RA | 924 | CG10075-RA | 88..864 | 17..793 | 3870 | 99.9 | Plus |
CG9948-RB | 1394 | CG9948-RB | 960..1238 | 793..515 | 1380 | 99.6 | Minus |
CG9948-RB | 1394 | CG9948-RB | 1305..1394 | 515..426 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6957006..6957284 | 793..515 | 1380 | 99.6 | Minus |
3L | 28110227 | 3L | 6957351..6957604 | 515..262 | 1270 | 100 | Minus |
3L | 28110227 | 3L | 6957663..6957852 | 262..73 | 950 | 100 | Minus |
3L | 28110227 | 3L | 6957964..6958021 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:18 has no hits.
BO13142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:38 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 1..780 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:27 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 77..862 | 14..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:15 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 88..864 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:40 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 77..862 | 14..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:34 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10075-RA | 88..864 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:34 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6957965..6958021 | 17..73 | 100 | | Minus |
3L | 6957004..6957284 | 515..795 | 98 | <- | Minus |
3L | 6957352..6957603 | 263..514 | 100 | <- | Minus |
3L | 6957663..6957851 | 74..262 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:15 Download gff for
BO13142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6950104..6950384 | 515..795 | 98 | <- | Minus |
arm_3L | 6950452..6950703 | 263..514 | 100 | <- | Minus |
arm_3L | 6950763..6950951 | 74..262 | 100 | <- | Minus |
arm_3L | 6951065..6951121 | 17..73 | 100 | | Minus |
BO13142.pep Sequence
Translation from 16 to 811
> BO13142.pep
MQCTRAVARLAGGLARTAWATQHTYKHRPAILGLLEQPCRLCSSTGVVDN
TNKTKPGTAEAAEGGILKRVLNKVGFTPNTKARLKVTSHLLYESVADKIN
YVTFFRDFNLPNTFNSWFLVTELHVWLLLMRSMAEGSETGEDGRFLRNCI
VEAMWGDVNTRAKKLGAHNPSRTRQQIETLSEQFQAALIAYDEGIMSDDR
VLACALWRRFFEMNCDDYAQIERLVKYVRQQASMLDSLPRDQFIVKPKVA
WLELDKCKVASFLDH
BO13142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10075-PA | 259 | CG10075-PA | 1..259 | 1..259 | 1361 | 100 | Plus |