Clone BO13142 Report

Search the DGRC for BO13142

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG10075-RA
Protein status:BO13142.pep: validated full length
Sequenced Size:811

Clone Sequence Records

BO13142.5prime Sequence

674 bp (653 high quality bases) assembled on 2006-05-08

> BO13142.5prime
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCA
AGATGAACTGTGATGATTACGCGC

BO13142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 780 CG10075-RA 1..658 17..674 3265 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 924 CG10075-RA 88..745 17..674 3275 99.8 Plus
CG9948-RB 1394 CG9948-RB 1079..1238 674..515 785 99.4 Minus
CG9948-RB 1394 CG9948-RB 1305..1394 515..426 450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6957351..6957604 515..262 1270 100 Minus
3L 28110227 3L 6957663..6957852 262..73 950 100 Minus
3L 28110227 3L 6957125..6957284 674..515 785 99.4 Minus
3L 28110227 3L 6957964..6958021 74..17 290 100 Minus
Blast to na_te.dros performed on 2015-02-09 08:51:38 has no hits.

BO13142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:03 Download gff for BO13142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-PA 1..658 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:03 Download gff for BO13142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-PA 1..658 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:47 Download gff for BO13142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 86..745 14..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:49 Download gff for BO13142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 86..745 14..674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:49 Download gff for BO13142.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6957125..6957284 515..674 99 <- Minus
3L 6957352..6957603 263..514 100 <- Minus
3L 6957663..6957851 74..262 100 <- Minus
3L 6957965..6958023 14..73 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:47 Download gff for BO13142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950225..6950384 515..674 99 <- Minus
arm_3L 6950452..6950703 263..514 100 <- Minus
arm_3L 6950763..6950951 74..262 100 <- Minus
arm_3L 6951065..6951123 14..73 98   Minus

BO13142.3prime Sequence

687 bp (655 high quality bases) assembled on 2006-05-08

> BO13142.3prime
ATGGTCTAGAAAGCTTGCAACCTTGCACTTGTCCAATTCCAACCATGCCA
CTTTCGGCTTGACAATGAACTGATCGCGTGGCAAACTGTCCAGCATGCTG
GCCTGCTGGCGGACGTACTTCACCAGTCGCTCGATCTGCGCGTAATCATC
ACAGTTCATCTCGAAGAAGCGGCGCCACAAGGCGCAGGCCAAAACCCGAT
CGTCGGACATGATGCCCTCGTCGTAGGCGATTAGGGCCGCTTGGAACTGC
TCGGATAAGGTCTCGATTTGCTGACGGGTGCGTGAAGGATTGTGAGCTCC
CAATTTCTTGGCGCGTGTGTTAACATCTCCCCACATCGCCTCCACAATGC
AGTTGCGCAGGAAGCGTCCATCCTCGCCCGTTTCGGAGCCCTCGGCCATG
GAGCGCATCAGGAGTAGCCAAACATGCAGTTCGGTGACCAAGAACCAGGA
GTTAAAGGTATTGGGCAGATTGAAGTCGCGGAAAAAGGTCACATAGTTGA
TCTTGTCGGCGACGCTTTCGTACAGCAGATGACTGGTTACCTTGAGGCGC
GCCTTTGTGTTCGGTGTGAAGCCCACTTTGTTGAGCACTCTCTTCAGAAT
ACCGCCTTCTGCGGCTTCCGCTGTGCCGGGTTTCGTTTTATTGGTATTAT
CCACAACGCCGGTGGATGAACACAAGCGGCATGGCTG

BO13142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 780 CG10075-RA 109..777 687..19 3320 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 924 CG10075-RA 196..864 687..19 3330 99.9 Minus
CG9948-RB 1394 CG9948-RB 960..1238 19..297 1380 99.6 Plus
CG9948-RB 1394 CG9948-RB 1305..1394 297..386 450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6957006..6957284 19..297 1380 99.6 Plus
3L 28110227 3L 6957351..6957604 297..550 1270 100 Plus
3L 28110227 3L 6957663..6957800 550..687 690 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:28:13 has no hits.

BO13142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:02 Download gff for BO13142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-PA 109..780 15..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:01 Download gff for BO13142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-PA 109..780 15..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:46 Download gff for BO13142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 196..871 11..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:30:34 Download gff for BO13142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 196..871 11..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:30:34 Download gff for BO13142.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956999..6957284 11..297 98 <- Plus
3L 6957352..6957603 298..549 100 <- Plus
3L 6957663..6957800 550..687 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:46 Download gff for BO13142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950763..6950900 550..687 100   Plus
arm_3L 6950452..6950703 298..549 100 <- Plus
arm_3L 6950099..6950384 11..297 98 <- Plus

BO13142.complete Sequence

811 bp assembled on 2006-10-11

GenBank Submission: FJ632691

> BO13142.complete
GAAGTTATCAGTCGACATGCAGTGCACTCGTGCAGTTGCAAGACTGGCCG
GCGGCCTAGCGAGAACCGCATGGGCAACACAACATACGTATAAGCACAGG
CCAGCGATACTGGGACTGCTGGAGCAGCCATGCCGCTTGTGTTCATCCAC
CGGCGTTGTGGATAATACCAATAAAACGAAACCCGGCACAGCGGAAGCCG
CAGAAGGCGGTATTCTGAAGAGAGTGCTCAACAAAGTGGGCTTCACACCG
AACACAAAGGCGCGCCTCAAGGTAACCAGTCATCTGCTGTACGAAAGCGT
CGCCGACAAGATCAACTATGTGACCTTTTTCCGCGACTTCAATCTGCCCA
ATACCTTTAACTCCTGGTTCTTGGTCACCGAACTGCATGTTTGGCTACTC
CTGATGCGCTCCATGGCCGAGGGCTCCGAAACGGGCGAGGATGGACGCTT
CCTGCGCAACTGCATTGTGGAGGCGATGTGGGGAGATGTTAACACACGCG
CCAAGAAATTGGGAGCTCACAATCCTTCACGCACCCGTCAGCAAATCGAG
ACCTTATCCGAGCAGTTCCAAGCGGCCCTAATCGCCTACGACGAGGGCAT
CATGTCCGACGATCGGGTTTTGGCCTGCGCCTTGTGGCGCCGCTTCTTCG
AGATGAACTGTGATGATTACGCGCAGATCGAGCGACTGGTGAAGTACGTC
CGCCAGCAGGCCAGCATGCTGGACAGTTTGCCACGCGATCAGTTCATTGT
CAAGCCGAAAGTGGCATGGTTGGAATTGGACAAGTGCAAGGTTGCAAGCT
TTCTAGACCAT

BO13142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 780 CG10075-PA 1..777 17..793 3870 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-RA 924 CG10075-RA 88..864 17..793 3870 99.9 Plus
CG9948-RB 1394 CG9948-RB 960..1238 793..515 1380 99.6 Minus
CG9948-RB 1394 CG9948-RB 1305..1394 515..426 450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6957006..6957284 793..515 1380 99.6 Minus
3L 28110227 3L 6957351..6957604 515..262 1270 100 Minus
3L 28110227 3L 6957663..6957852 262..73 950 100 Minus
3L 28110227 3L 6957964..6958021 74..17 290 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:25:18 has no hits.

BO13142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:38 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 1..780 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:27 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 77..862 14..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:15 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 88..864 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:40 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 77..862 14..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:34 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG10075-RA 88..864 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:34 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6957965..6958021 17..73 100   Minus
3L 6957004..6957284 515..795 98 <- Minus
3L 6957352..6957603 263..514 100 <- Minus
3L 6957663..6957851 74..262 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:15 Download gff for BO13142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6950104..6950384 515..795 98 <- Minus
arm_3L 6950452..6950703 263..514 100 <- Minus
arm_3L 6950763..6950951 74..262 100 <- Minus
arm_3L 6951065..6951121 17..73 100   Minus

BO13142.pep Sequence

Translation from 16 to 811

> BO13142.pep
MQCTRAVARLAGGLARTAWATQHTYKHRPAILGLLEQPCRLCSSTGVVDN
TNKTKPGTAEAAEGGILKRVLNKVGFTPNTKARLKVTSHLLYESVADKIN
YVTFFRDFNLPNTFNSWFLVTELHVWLLLMRSMAEGSETGEDGRFLRNCI
VEAMWGDVNTRAKKLGAHNPSRTRQQIETLSEQFQAALIAYDEGIMSDDR
VLACALWRRFFEMNCDDYAQIERLVKYVRQQASMLDSLPRDQFIVKPKVA
WLELDKCKVASFLDH

BO13142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10075-PA 259 CG10075-PA 1..259 1..259 1361 100 Plus