Clone Sequence Records
BO13145.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-05-08
> BO13145.3prime
ATGGTCTAGAAAGCTTGCTTTTCTTCGCACGGTGGTCCAGCCGTCTTCCG
GTTCCACAAACTCCTCAGCCTGCTGCTTTCGTGCCTGCGATCGCGTCATC
CGACCACTGCCGCTGGGAGTTTCCTCGTCGCCCTGGCCCATTTCATTATC
GTCCTCCTCGTCGCTGTCGTCCATGTCCTCATCGGATGAGGAGTCCCCAT
CGATGGGTGTGTAGGTGATCTTAACATCCGGACGCAGCCACTCCTTGCCA
GCAGGAAGTTTACTCAATTCAGCCTCTATTTGCGGAAACTGGTTCTGCTG
GGCCATCAATTTGTAGCGCAGCAGATTCCGGCAGATCTCCGGAATGGAGT
CGTCGTCGCAGAGGGTGTTAAACTCCTGGTCCATCAGCTCCTCCAGGACC
TCCACCAGTTCGCCTTGCGTGATATTTTCGTTGGACACGCAGTACTGGTA
GGTGTAGTCCATGATTTCTATGGCCACCTGTTGGCCATTGCGTCCGCCCA
TGCCATGCTCCACCGCCAGCCGGAGATCCTGCCAGTGATTGAAGATCTTC
TCTACAATCACTCTAAAATTCTTTTGGAATTCAGTTTGTTGTGCGGCTGC
CATGTCGACTGATAACT
BO13145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-PA | 588 | CG14543-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..612 | 603..19 | 2925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057305 | 479..19 | 2305 | 100 | Minus |
| 3R | 32079331 | 3R | 26056657..26056784 | 603..476 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:38:49 has no hits.
BO13145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:07 Download gff for
BO13145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:10 Download gff for
BO13145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-PA | 1..588 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:39 Download gff for
BO13145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 9..607 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:06 Download gff for
BO13145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 9..607 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:06 Download gff for
BO13145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056847..26057304 | 20..477 | 100 | -> | Minus |
| 3R | 26056655..26056782 | 478..607 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:39 Download gff for
BO13145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882377..21882504 | 478..607 | 98 | -> | Minus |
| arm_3R | 21882569..21883026 | 20..477 | 100 | -> | Minus |
BO13145.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-05-08
> BO13145.5prime
GAAGTTATCAGTCGACATGGCAGCCGCACAACAAACTGAATTCCAAAAGA
ATTTTAGAGTGATTGTAGAGAAGATCTTCAATCACTGGCAGGATCTCCGG
CTGGCGGTGGAGCATGGCATGGGCGGACGCAATGGCCAACAGGTGGCCAT
AGAAATCATGGACTACACCTACCAGTACTGCGTGTCCAACGAAAATATCA
CGCAAGGCGAACTGGTGGAGGTCCTGGAGGAGCTGATGGACCAGGAGTTT
AACACCCTCTGCGACGACGACTCCATTCCGGAGATCTGCCGGAATCTGCT
GCGCTACAAATTGATGGCCCAGCAGAACCAGTTTCCGCAAATAGAGGCTG
AATTGAGTAAACTTCCTGCTGGCAAGGAGTGGCTGCGTCCGGATGTTAAG
ATCACCTACACACCCATCGATGGGGACTCCTCATCCGATGAGGACATGGA
CGACAGCGACGAGGAGGACGATAATGAAATGGGCCAGGGCGACGAGGAAA
CTCCCAGCGGCAGTGGTCGGATGACGCGATCGCAGGCACGAAAGCAGCAG
GCTGAGGAGTTTGTGGAACCGGAAGACGGCTGGACCACCGTGCGAAGAAA
AGCAAGCTTTCTAGACC
BO13145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-PA | 588 | CG14543-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..612 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057305 | 141..601 | 2305 | 100 | Plus |
| 3R | 32079331 | 3R | 26056657..26056784 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:44:25 has no hits.
BO13145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:08 Download gff for
BO13145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:11 Download gff for
BO13145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-PA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:35 Download gff for
BO13145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:05 Download gff for
BO13145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 13..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:05 Download gff for
BO13145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056655..26056782 | 13..142 | 98 | -> | Plus |
| 3R | 26056847..26057304 | 143..600 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:35 Download gff for
BO13145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882377..21882504 | 13..142 | 98 | -> | Plus |
| arm_3R | 21882569..21883026 | 143..600 | 100 | -> | Plus |
BO13145.complete Sequence
619 bp assembled on 2006-10-11
GenBank Submission: FJ632692
> BO13145.complete
GAAGTTATCAGTCGACATGGCAGCCGCACAACAAACTGAATTCCAAAAGA
ATTTTAGAGTGATTGTAGAGAAGATCTTCAATCACTGGCAGGATCTCCGG
CTGGCGGTGGAGCATGGCATGGGCGGACGCAATGGCCAACAGGTGGCCAT
AGAAATCATGGACTACACCTACCAGTACTGCGTGTCCAACGAAAATATCA
CGCAAGGCGAACTGGTGGAGGTCCTGGAGGAGCTGATGGACCAGGAGTTT
AACACCCTCTGCGACGACGACTCCATTCCGGAGATCTGCCGGAATCTGCT
GCGCTACAAATTGATGGCCCAGCAGAACCAGTTTCCGCAAATAGAGGCTG
AATTGAGTAAACTTCCTGCTGGCAAGGAGTGGCTGCGTCCGGATGTTAAG
ATCACCTACACACCCATCGATGGGGACTCCTCATCCGATGAGGACATGGA
CGACAGCGACGAGGAGGACGATAATGAAATGGGCCAGGGCGACGAGGAAA
CTCCCAGCGGCAGTGGTCGGATGACGCGATCGCAGGCACGAAAGCAGCAG
GCTGAGGAGTTTGTGGAACCGGAAGACGGCTGGACCACCGTGCGAAGAAA
AGCAAGCTTTCTAGACCAT
BO13145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 588 | CG14543-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..612 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057305 | 141..601 | 2305 | 100 | Plus |
| 3R | 32079331 | 3R | 26056657..26056784 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:30:12 has no hits.
BO13145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:41 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 1..588 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:29 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 29..623 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:05 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 28..608 | 17..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:41 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 29..623 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:55 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 28..608 | 17..597 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:55 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056657..26056782 | 17..142 | 100 | -> | Plus |
| 3R | 26056847..26057301 | 143..597 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:05 Download gff for
BO13145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882379..21882504 | 17..142 | 100 | -> | Plus |
| arm_3R | 21882569..21883023 | 143..597 | 100 | | Plus |
BO13145.pep Sequence
Translation from 16 to 619
> BO13145.pep
MAAAQQTEFQKNFRVIVEKIFNHWQDLRLAVEHGMGGRNGQQVAIEIMDY
TYQYCVSNENITQGELVEVLEELMDQEFNTLCDDDSIPEICRNLLRYKLM
AQQNQFPQIEAELSKLPAGKEWLRPDVKITYTPIDGDSSSDEDMDDSDEE
DDNEMGQGDEETPSGSGRMTRSQARKQQAEEFVEPEDGWTTVRRKASFLD
H
BO13145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-PA | 195 | CG14543-PA | 1..195 | 1..195 | 1028 | 100 | Plus |
