Clone Sequence Records
BO13147.3prime Sequence
765 bp (672 high quality bases) assembled on 2006-05-08
> BO13147.3prime
ATGGTCTAGAAAGCTTGCCTGCTGATTCGCAATCTGAGTGTTGTCCATCT
GGGTGGTCAGCTCGGATATGCCCTCCTCCTCCTCAGAGATGAGGTCCACC
CAGTAGCGGAGCTTCTTGCTGCGCAGGTAGCTGGCGGAGTTGTCGAAAAC
CACCGTGTAAGTGGTGTTCGGTCGTGTAGAGATGTAACCAATCTCGTCCA
TCTCGTTGGAGTACACGGTTCCCAGGGGCACCTCGCTGCGCTTCTCGCCC
GTCTTGTCGTCCACGCTGTAGATGCCGAATTTGATGTCGTAGTCAAAGGT
GCGGAACTCCCAGGAGAGGATCTTCTGCTCCTCAACGTTGACCTTAAAGT
GCAGCTTCAACTTGTCGCCCTTGGGAACCTGGGCCTCCACAAAGTCTCGA
TCGCTCTGCTGGCTACTCTGATCAATGTAAAGCTCCTCCGGCAGCTTGCC
TCCCCAGACCATCAGTGCCTTGCACTGGGGATCTCCGTTCCTGTCCACCA
TCTCGCCGCCCCAGGCCTTCGGAAATGCCTTTCGGTTCACATGGGAGAAG
AGTTGCTCCTGCCAGCGGTCCACTCCGGATTTGTAGATCACGATCTTGCT
GGTGGTGTTCTCGTCCAGGAATTTCTTAACAATGTTGAACGCCACCGAGA
AGAGCTTGGGTGCGTTGATGATGTAGCACATCTTGAGGAGCTCCGGGAAG
TTGGCCTCGTATTGCTTCACCGTAAAGATCACACCATTCCGCAGCCGGTC
GCCAGGCGTACTGCT
BO13147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-PA | 1224 | CG13893-RA | 506..1221 | 734..19 | 3555 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 2198 | CG13893-RA | 1060..1805 | 765..19 | 3680 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 599688..600293 | 159..765 | 2955 | 99.5 | Plus |
3L | 28110227 | 3L | 599487..599626 | 19..158 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:33:19 has no hits.
BO13147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:11 Download gff for
BO13147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-PA | 476..1224 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:16 Download gff for
BO13147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-PA | 476..1224 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:55 Download gff for
BO13147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 1060..1809 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:19 Download gff for
BO13147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 1060..1809 | 15..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:19 Download gff for
BO13147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 599483..599626 | 15..158 | 98 | <- | Plus |
3L | 599688..600293 | 159..765 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:55 Download gff for
BO13147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 599483..599626 | 15..158 | 98 | <- | Plus |
arm_3L | 599688..600293 | 159..765 | 99 | | Plus |
BO13147.5prime Sequence
751 bp (617 high quality bases) assembled on 2006-05-08
> BO13147.5prime
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGAACCGCTGGCAGGAG
CAACTCTTCTCCCCTGTGAAACGAAAGGCATTTCCGAAGGCCTGGGGCGG
C
BO13147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-PA | 1224 | CG13893-RA | 1..735 | 17..751 | 3600 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 2198 | CG13893-RA | 583..1319 | 15..751 | 3640 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 600034..600483 | 751..302 | 2205 | 99.3 | Minus |
3L | 28110227 | 3L | 600547..600664 | 302..185 | 590 | 100 | Minus |
3L | 28110227 | 3L | 600843..600914 | 140..69 | 360 | 100 | Minus |
3L | 28110227 | 3L | 603371..603426 | 70..15 | 280 | 100 | Minus |
3L | 28110227 | 3L | 600727..600772 | 184..139 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:43:23 has no hits.
BO13147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:12 Download gff for
BO13147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-PA | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:17 Download gff for
BO13147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-PA | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:22 Download gff for
BO13147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 578..1319 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:55 Download gff for
BO13147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 578..1319 | 9..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:55 Download gff for
BO13147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 600034..600482 | 303..751 | 99 | <- | Minus |
3L | 600547..600664 | 185..302 | 100 | <- | Minus |
3L | 600727..600770 | 141..184 | 100 | <- | Minus |
3L | 600843..600912 | 71..140 | 100 | <- | Minus |
3L | 603371..603431 | 9..70 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:22 Download gff for
BO13147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 600034..600482 | 303..751 | 99 | <- | Minus |
arm_3L | 600547..600664 | 185..302 | 100 | <- | Minus |
arm_3L | 600727..600770 | 141..184 | 100 | <- | Minus |
arm_3L | 600843..600912 | 71..140 | 100 | <- | Minus |
arm_3L | 603371..603431 | 9..70 | 93 | | Minus |
BO13147.complete Sequence
1255 bp assembled on 2006-10-11
GenBank Submission: FJ632693
> BO13147.complete
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAG
CAACTCTTCTCCCATGTGAACCGAAAGGCATTTCCGAAGGCCTGGGGCGG
CGAGATGGTGGACAGGAACGGAGATCCCCAGTGCAAGGCACTGATGGTCT
GGGGAGGCAAGCTGCCGGAGGAGCTTTACATTGATCAGAGTAGCCAGCAG
AGCGATCGAGACTTTGTGGAGGCCCAGGTTCCCAAGGGCGACAAGTTGAA
GCTGCACTTTAAGGTCAACGTTGAGGAGCAGAAGATCCTCTCCTGGGAGT
TCCGCACCTTTGACTACGACATCAAATTCGGCATCTACAGCGTGGACGAC
AAGACGGGCGAGAAGCGCAGCGAGGTGCCCCTGGGAACCGTGTACTCCAA
CGAGATGGACGAGATTGGTTACATCTCTACACGACCGAACACCACTTACA
CGGTGGTTTTCGACAACTCCGCCAGCTACCTGCGCAGCAAGAAGCTCCGC
TACTGGGTGGACCTCATCTCTGAGGAGGAGGAGGGCATATCCGAGCTGAC
CACCCAGATGGACAACACTCAGATTGCGAATCAGCAGGCAAGCTTTCTAG
ACCAT
BO13147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 1224 | CG13893-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-RA | 2198 | CG13893-RA | 583..1805 | 15..1237 | 6115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 599688..600483 | 1097..302 | 3980 | 100 | Minus |
3L | 28110227 | 3L | 599487..599626 | 1237..1098 | 700 | 100 | Minus |
3L | 28110227 | 3L | 600547..600664 | 302..185 | 590 | 100 | Minus |
3L | 28110227 | 3L | 600843..600914 | 140..69 | 360 | 100 | Minus |
3L | 28110227 | 3L | 603371..603426 | 70..15 | 280 | 100 | Minus |
3L | 28110227 | 3L | 600727..600772 | 184..139 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:22 has no hits.
BO13147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:43 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 1..1224 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:32 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 571..1802 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:15 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 585..1805 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:44 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 571..1802 | 9..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:48 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13893-RA | 585..1805 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:48 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 599484..599626 | 1098..1239 | 98 | <- | Minus |
3L | 599688..600482 | 303..1097 | 100 | <- | Minus |
3L | 600547..600664 | 185..302 | 100 | <- | Minus |
3L | 600727..600770 | 141..184 | 100 | <- | Minus |
3L | 600843..600912 | 71..140 | 100 | <- | Minus |
3L | 603371..603424 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:15 Download gff for
BO13147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 599484..599626 | 1098..1239 | 98 | <- | Minus |
arm_3L | 599688..600482 | 303..1097 | 100 | <- | Minus |
arm_3L | 600547..600664 | 185..302 | 100 | <- | Minus |
arm_3L | 600727..600770 | 141..184 | 100 | <- | Minus |
arm_3L | 600843..600912 | 71..140 | 100 | <- | Minus |
arm_3L | 603371..603424 | 17..70 | 100 | | Minus |
BO13147.pep Sequence
Translation from 16 to 1255
> BO13147.pep
MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA
EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP
FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF
FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA
FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR
NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV
NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI
GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN
TQIANQQASFLDH
BO13147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13893-PA | 407 | CG13893-PA | 1..407 | 1..407 | 2167 | 100 | Plus |
retm-PC | 659 | CG9528-PC | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PA | 659 | CG9528-PA | 214..589 | 5..357 | 276 | 22.2 | Plus |
retm-PB | 707 | CG9528-PB | 214..589 | 5..357 | 276 | 22.2 | Plus |