Clone BO13147 Report

Search the DGRC for BO13147

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG13893-RA
Protein status:BO13147.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO13147.3prime Sequence

765 bp (672 high quality bases) assembled on 2006-05-08

> BO13147.3prime
ATGGTCTAGAAAGCTTGCCTGCTGATTCGCAATCTGAGTGTTGTCCATCT
GGGTGGTCAGCTCGGATATGCCCTCCTCCTCCTCAGAGATGAGGTCCACC
CAGTAGCGGAGCTTCTTGCTGCGCAGGTAGCTGGCGGAGTTGTCGAAAAC
CACCGTGTAAGTGGTGTTCGGTCGTGTAGAGATGTAACCAATCTCGTCCA
TCTCGTTGGAGTACACGGTTCCCAGGGGCACCTCGCTGCGCTTCTCGCCC
GTCTTGTCGTCCACGCTGTAGATGCCGAATTTGATGTCGTAGTCAAAGGT
GCGGAACTCCCAGGAGAGGATCTTCTGCTCCTCAACGTTGACCTTAAAGT
GCAGCTTCAACTTGTCGCCCTTGGGAACCTGGGCCTCCACAAAGTCTCGA
TCGCTCTGCTGGCTACTCTGATCAATGTAAAGCTCCTCCGGCAGCTTGCC
TCCCCAGACCATCAGTGCCTTGCACTGGGGATCTCCGTTCCTGTCCACCA
TCTCGCCGCCCCAGGCCTTCGGAAATGCCTTTCGGTTCACATGGGAGAAG
AGTTGCTCCTGCCAGCGGTCCACTCCGGATTTGTAGATCACGATCTTGCT
GGTGGTGTTCTCGTCCAGGAATTTCTTAACAATGTTGAACGCCACCGAGA
AGAGCTTGGGTGCGTTGATGATGTAGCACATCTTGAGGAGCTCCGGGAAG
TTGGCCTCGTATTGCTTCACCGTAAAGATCACACCATTCCGCAGCCGGTC
GCCAGGCGTACTGCT

BO13147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 1224 CG13893-RA 506..1221 734..19 3555 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2198 CG13893-RA 1060..1805 765..19 3680 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 599688..600293 159..765 2955 99.5 Plus
3L 28110227 3L 599487..599626 19..158 700 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:33:19 has no hits.

BO13147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:11 Download gff for BO13147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-PA 476..1224 16..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:16 Download gff for BO13147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-PA 476..1224 16..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:55 Download gff for BO13147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1060..1809 15..765 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:19 Download gff for BO13147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1060..1809 15..765 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:19 Download gff for BO13147.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 599483..599626 15..158 98 <- Plus
3L 599688..600293 159..765 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:55 Download gff for BO13147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 599483..599626 15..158 98 <- Plus
arm_3L 599688..600293 159..765 99   Plus

BO13147.5prime Sequence

751 bp (617 high quality bases) assembled on 2006-05-08

> BO13147.5prime
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGAACCGCTGGCAGGAG
CAACTCTTCTCCCCTGTGAAACGAAAGGCATTTCCGAAGGCCTGGGGCGG
C

BO13147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 1224 CG13893-RA 1..735 17..751 3600 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2198 CG13893-RA 583..1319 15..751 3640 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 600034..600483 751..302 2205 99.3 Minus
3L 28110227 3L 600547..600664 302..185 590 100 Minus
3L 28110227 3L 600843..600914 140..69 360 100 Minus
3L 28110227 3L 603371..603426 70..15 280 100 Minus
3L 28110227 3L 600727..600772 184..139 230 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:43:23 has no hits.

BO13147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:12 Download gff for BO13147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-PA 1..735 17..751 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:17 Download gff for BO13147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-PA 1..735 17..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:22 Download gff for BO13147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 578..1319 9..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:55 Download gff for BO13147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 578..1319 9..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:55 Download gff for BO13147.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 600034..600482 303..751 99 <- Minus
3L 600547..600664 185..302 100 <- Minus
3L 600727..600770 141..184 100 <- Minus
3L 600843..600912 71..140 100 <- Minus
3L 603371..603431 9..70 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:22 Download gff for BO13147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 600034..600482 303..751 99 <- Minus
arm_3L 600547..600664 185..302 100 <- Minus
arm_3L 600727..600770 141..184 100 <- Minus
arm_3L 600843..600912 71..140 100 <- Minus
arm_3L 603371..603431 9..70 93   Minus

BO13147.complete Sequence

1255 bp assembled on 2006-10-11

GenBank Submission: FJ632693

> BO13147.complete
GAAGTTATCAGTCGACATGTCAGGTCCACTGCCCGAAATCAGCGAAGAAC
AGCGCGCCATATTGGAGAAGTTTCGCAAGCAAATGGATGATGCGTTGGTT
GGAACCCACGACGATTACTTCTTGGTGCGCTGGCTAAGAGCTCGAAAATG
GAATCTGGAGGCAGCGGAGAAAATGCTGAGAGCTAGTTTGAAAACACGCG
CCATGTGGAATGTGGACAACATCGAGAAGTGGGATCCACCGAAGGCATTG
CAGGAGTATCTGCCATACGGCCTCATGGGCTACGACAACGAAGGATCACC
GGTGCTGGTCTGCCCCTTTGCCAACTTCGACATGTGGGGCATGATGCACT
GCGTCACGCGGTTTGAGTTCCAAAAGTACCTGGTCCTGCTGCTCGAGCGC
TTCATGAAGATCGCCTACGATCAGAGTCAAAAGCACGGATGGCGAGCCCG
CCAGCTGGTTGTATTTTTCGACATGCAGGATGTGAACCTGAAGCAGTACG
CCTGGCGACCGGCTGCCGAATGTGTGATCTCTACGGTGAAGCAATACGAG
GCCAACTTCCCGGAGCTCCTCAAGATGTGCTACATCATCAACGCACCCAA
GCTCTTCTCGGTGGCGTTCAACATTGTTAAGAAATTCCTGGACGAGAACA
CCACCAGCAAGATCGTGATCTACAAATCCGGAGTGGACCGCTGGCAGGAG
CAACTCTTCTCCCATGTGAACCGAAAGGCATTTCCGAAGGCCTGGGGCGG
CGAGATGGTGGACAGGAACGGAGATCCCCAGTGCAAGGCACTGATGGTCT
GGGGAGGCAAGCTGCCGGAGGAGCTTTACATTGATCAGAGTAGCCAGCAG
AGCGATCGAGACTTTGTGGAGGCCCAGGTTCCCAAGGGCGACAAGTTGAA
GCTGCACTTTAAGGTCAACGTTGAGGAGCAGAAGATCCTCTCCTGGGAGT
TCCGCACCTTTGACTACGACATCAAATTCGGCATCTACAGCGTGGACGAC
AAGACGGGCGAGAAGCGCAGCGAGGTGCCCCTGGGAACCGTGTACTCCAA
CGAGATGGACGAGATTGGTTACATCTCTACACGACCGAACACCACTTACA
CGGTGGTTTTCGACAACTCCGCCAGCTACCTGCGCAGCAAGAAGCTCCGC
TACTGGGTGGACCTCATCTCTGAGGAGGAGGAGGGCATATCCGAGCTGAC
CACCCAGATGGACAACACTCAGATTGCGAATCAGCAGGCAAGCTTTCTAG
ACCAT

BO13147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 1224 CG13893-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-RA 2198 CG13893-RA 583..1805 15..1237 6115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 599688..600483 1097..302 3980 100 Minus
3L 28110227 3L 599487..599626 1237..1098 700 100 Minus
3L 28110227 3L 600547..600664 302..185 590 100 Minus
3L 28110227 3L 600843..600914 140..69 360 100 Minus
3L 28110227 3L 603371..603426 70..15 280 100 Minus
3L 28110227 3L 600727..600772 184..139 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:59:22 has no hits.

BO13147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:43 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 1..1224 17..1240 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:32 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 571..1802 9..1241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:15 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 585..1805 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:44 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 571..1802 9..1241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:48 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
CG13893-RA 585..1805 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:48 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
3L 599484..599626 1098..1239 98 <- Minus
3L 599688..600482 303..1097 100 <- Minus
3L 600547..600664 185..302 100 <- Minus
3L 600727..600770 141..184 100 <- Minus
3L 600843..600912 71..140 100 <- Minus
3L 603371..603424 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:15 Download gff for BO13147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 599484..599626 1098..1239 98 <- Minus
arm_3L 599688..600482 303..1097 100 <- Minus
arm_3L 600547..600664 185..302 100 <- Minus
arm_3L 600727..600770 141..184 100 <- Minus
arm_3L 600843..600912 71..140 100 <- Minus
arm_3L 603371..603424 17..70 100   Minus

BO13147.pep Sequence

Translation from 16 to 1255

> BO13147.pep
MSGPLPEISEEQRAILEKFRKQMDDALVGTHDDYFLVRWLRARKWNLEAA
EKMLRASLKTRAMWNVDNIEKWDPPKALQEYLPYGLMGYDNEGSPVLVCP
FANFDMWGMMHCVTRFEFQKYLVLLLERFMKIAYDQSQKHGWRARQLVVF
FDMQDVNLKQYAWRPAAECVISTVKQYEANFPELLKMCYIINAPKLFSVA
FNIVKKFLDENTTSKIVIYKSGVDRWQEQLFSHVNRKAFPKAWGGEMVDR
NGDPQCKALMVWGGKLPEELYIDQSSQQSDRDFVEAQVPKGDKLKLHFKV
NVEEQKILSWEFRTFDYDIKFGIYSVDDKTGEKRSEVPLGTVYSNEMDEI
GYISTRPNTTYTVVFDNSASYLRSKKLRYWVDLISEEEEGISELTTQMDN
TQIANQQASFLDH

BO13147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13893-PA 407 CG13893-PA 1..407 1..407 2167 100 Plus
retm-PC 659 CG9528-PC 214..589 5..357 276 22.2 Plus
retm-PA 659 CG9528-PA 214..589 5..357 276 22.2 Plus
retm-PB 707 CG9528-PB 214..589 5..357 276 22.2 Plus