Clone BO13149 Report

Search the DGRC for BO13149

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG1673-RA
Protein status:BO13149.pep: validated full length
Sequenced Size:1363

Clone Sequence Records

BO13149.3prime Sequence

717 bp (631 high quality bases) assembled on 2006-05-08

> BO13149.3prime
ATGGTCTAGAAAGCTTGCGTCGATCACCACCGCCCACGGATGATCCACCC
GACCGTACTGAATGTCGGTGAGCGTTTCGCGGATCAGCTCGTGAACGGGC
TTCTCCTGCTCCATGGTGGGTATATACAGATCCTGGCCAAGGTAGCTGAT
CCTGTTCACGGGGCTAACCACGCACGCCGTTCCCGCACCAAAGAGCTCCA
GCAGCCTTCCCTGGTTGAGGAGCTCACAGACCATGGGCATGGTGATGTTC
GCCTCGCTAACCTTAAACTTGCCCCACTGGCGGGTCATGCGCAGGATGGA
GTCGCGGGTGATACCGGGCAGGATTAGACCGCTCAGCGGTGGGGTAACCA
GTTCTTGTTCTCCTTGATCGTTCACGAAGAACATAAAGATGTTCATGGTG
CCCACTTCGGTTAGCTGATGATCCTCGCCGTAGAGCCACAGCACCTGCTG
CAGTCCCTTGGCGGCCGCCTCCTTCTGCACATTGATTGTGGGTGCGTAGT
TGGAGCCCATTTTGCGATTGCCCACGCCGCCTGGCCAGGCACGAACATAA
CTGGGATCGGCCAGCAGGGAGACGGCACCGGACGAGCCTGTCTTAAAGTA
ACTGCCCACGGGGCTGAGGATCGTGTAGAGCAGGGCCGAGTCGGAGGAAG
CAACTCCCAGTGTGGGATCAATGCCGATCAGTGTGGGGCGGATGTACAAG
CTGGCGGTGTCCGTGTG

BO13149.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 1332 CG1673-RA 631..1329 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2510 CG1673-RA 1003..1701 717..19 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13399633..13399939 666..360 1535 100 Minus
X 23542271 X 13400229..13400415 205..19 935 100 Minus
X 23542271 X 13400005..13400161 361..205 785 100 Minus
X 23542271 X 13399511..13399561 717..667 255 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:38:39 has no hits.

BO13149.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:15 Download gff for BO13149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-PA 631..1332 15..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:19 Download gff for BO13149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-PA 631..1332 15..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:38 Download gff for BO13149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1003..1712 8..717 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:03 Download gff for BO13149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1003..1712 8..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:03 Download gff for BO13149.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13400230..13400426 8..204 97   Minus
X 13399633..13399939 360..666 100 -> Minus
X 13400007..13400161 205..359 100 -> Minus
X 13399511..13399561 667..717 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:38 Download gff for BO13149.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13293544..13293594 667..717 100 -> Minus
arm_X 13293666..13293972 360..666 100 -> Minus
arm_X 13294040..13294194 205..359 100 -> Minus
arm_X 13294263..13294459 8..204 97   Minus

BO13149.5prime Sequence

745 bp (736 high quality bases) assembled on 2006-05-08

> BO13149.5prime
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCC
ACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATC

BO13149.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 1332 CG1673-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2510 CG1673-RA 373..1101 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13398583..13399004 45..466 2110 100 Plus
X 23542271 X 13399329..13399561 465..697 1165 100 Plus
X 23542271 X 13399633..13399680 698..745 240 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:12:47 has no hits.

BO13149.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:16 Download gff for BO13149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:20 Download gff for BO13149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:59 Download gff for BO13149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 365..1101 8..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:48 Download gff for BO13149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 365..1101 8..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:48 Download gff for BO13149.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13398585..13399004 47..466 100 -> Plus
X 13399331..13399561 467..697 100 -> Plus
X 13399633..13399680 698..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:59 Download gff for BO13149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13292618..13293037 47..466 100 -> Plus
arm_X 13293364..13293594 467..697 100 -> Plus
arm_X 13293666..13293713 698..745 100   Plus

BO13149.complete Sequence

1363 bp assembled on 2006-10-11

GenBank Submission: FJ632694

> BO13149.complete
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCC
ACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATCCTCAG
CCCCGTGGGCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTCCCTGC
TGGCCGATCCCAGTTATGTTCGTGCCTGGCCAGGCGGCGTGGGCAATCGC
AAAATGGGCTCCAACTACGCACCCACAATCAATGTGCAGAAGGAGGCGGC
CGCCAAGGGACTGCAGCAGGTGCTGTGGCTCTACGGCGAGGATCATCAGC
TAACCGAAGTGGGCACCATGAACATCTTTATGTTCTTCGTGAACGATCAA
GGAGAACAAGAACTGGTTACCCCACCGCTGAGCGGTCTAATCCTGCCCGG
TATCACCCGCGACTCCATCCTGCGCATGACCCGCCAGTGGGGCAAGTTTA
AGGTTAGCGAGGCGAACATCACCATGCCCATGGTCTGTGAGCTCCTCAAC
CAGGGAAGGCTGCTGGAGCTCTTTGGTGCGGGAACGGCGTGCGTGGTTAG
CCCCGTGAACAGGATCAGCTACCTTGGCCAGGATCTGTATATACCCACCA
TGGAGCAGGAGAAGCCCGTTCACGAGCTGATCCGCGAAACGCTCACCGAC
ATTCAGTACGGTCGGGTGGATCATCCGTGGGCGGTGGTGATCGACGCAAG
CTTTCTAGACCAT

BO13149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 1332 CG1673-PA 1..1329 17..1345 6645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-RA 2510 CG1673-RA 373..1701 17..1345 6645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13398583..13399004 45..466 2110 100 Plus
X 23542271 X 13399633..13399939 698..1004 1535 100 Plus
X 23542271 X 13399329..13399561 465..697 1165 100 Plus
X 23542271 X 13400229..13400415 1159..1345 935 100 Plus
X 23542271 X 13400005..13400161 1003..1159 785 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:53:47 has no hits.

BO13149.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:45 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 1..1332 17..1349 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:34 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 371..1718 8..1356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:59 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 373..1701 17..1347 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:45 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 371..1718 8..1356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:08 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
CG1673-RA 373..1701 17..1347 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:08 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
X 13400230..13400415 1160..1347 98   Plus
X 13397271..13397300 17..46 100 -> Plus
X 13398585..13399004 47..466 100 -> Plus
X 13399331..13399561 467..697 100 -> Plus
X 13399633..13399939 698..1004 100 -> Plus
X 13400007..13400161 1005..1159 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:59 Download gff for BO13149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13291304..13291333 17..46 100 -> Plus
arm_X 13292618..13293037 47..466 100 -> Plus
arm_X 13293364..13293594 467..697 100 -> Plus
arm_X 13293666..13293972 698..1004 100 -> Plus
arm_X 13294040..13294194 1005..1159 100 -> Plus
arm_X 13294263..13294448 1160..1347 98   Plus

BO13149.pep Sequence

Translation from 16 to 1363

> BO13149.pep
MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQQKSSAD
FEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDND
EELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVE
LFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSR
LLSIDSEWVPHTDTASLYIRPTLIGIDPTLGVASSDSALLYTILSPVGSY
FKTGSSGAVSLLADPSYVRAWPGGVGNRKMGSNYAPTINVQKEAAAKGLQ
QVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELVTPPLSGLILPGITRDS
ILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTACVVSPVNRI
SYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVIDASFLDH

BO13149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1673-PA 443 CG1673-PA 1..443 1..443 2299 100 Plus