Clone Sequence Records
BO13149.3prime Sequence
717 bp (631 high quality bases) assembled on 2006-05-08
> BO13149.3prime
ATGGTCTAGAAAGCTTGCGTCGATCACCACCGCCCACGGATGATCCACCC
GACCGTACTGAATGTCGGTGAGCGTTTCGCGGATCAGCTCGTGAACGGGC
TTCTCCTGCTCCATGGTGGGTATATACAGATCCTGGCCAAGGTAGCTGAT
CCTGTTCACGGGGCTAACCACGCACGCCGTTCCCGCACCAAAGAGCTCCA
GCAGCCTTCCCTGGTTGAGGAGCTCACAGACCATGGGCATGGTGATGTTC
GCCTCGCTAACCTTAAACTTGCCCCACTGGCGGGTCATGCGCAGGATGGA
GTCGCGGGTGATACCGGGCAGGATTAGACCGCTCAGCGGTGGGGTAACCA
GTTCTTGTTCTCCTTGATCGTTCACGAAGAACATAAAGATGTTCATGGTG
CCCACTTCGGTTAGCTGATGATCCTCGCCGTAGAGCCACAGCACCTGCTG
CAGTCCCTTGGCGGCCGCCTCCTTCTGCACATTGATTGTGGGTGCGTAGT
TGGAGCCCATTTTGCGATTGCCCACGCCGCCTGGCCAGGCACGAACATAA
CTGGGATCGGCCAGCAGGGAGACGGCACCGGACGAGCCTGTCTTAAAGTA
ACTGCCCACGGGGCTGAGGATCGTGTAGAGCAGGGCCGAGTCGGAGGAAG
CAACTCCCAGTGTGGGATCAATGCCGATCAGTGTGGGGCGGATGTACAAG
CTGGCGGTGTCCGTGTG
BO13149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-PA | 1332 | CG1673-RA | 631..1329 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 2510 | CG1673-RA | 1003..1701 | 717..19 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13399633..13399939 | 666..360 | 1535 | 100 | Minus |
X | 23542271 | X | 13400229..13400415 | 205..19 | 935 | 100 | Minus |
X | 23542271 | X | 13400005..13400161 | 361..205 | 785 | 100 | Minus |
X | 23542271 | X | 13399511..13399561 | 717..667 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:38:39 has no hits.
BO13149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:15 Download gff for
BO13149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-PA | 631..1332 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:19 Download gff for
BO13149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-PA | 631..1332 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:38 Download gff for
BO13149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 1003..1712 | 8..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:03 Download gff for
BO13149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 1003..1712 | 8..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:03 Download gff for
BO13149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13400230..13400426 | 8..204 | 97 | | Minus |
X | 13399633..13399939 | 360..666 | 100 | -> | Minus |
X | 13400007..13400161 | 205..359 | 100 | -> | Minus |
X | 13399511..13399561 | 667..717 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:38 Download gff for
BO13149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13293544..13293594 | 667..717 | 100 | -> | Minus |
arm_X | 13293666..13293972 | 360..666 | 100 | -> | Minus |
arm_X | 13294040..13294194 | 205..359 | 100 | -> | Minus |
arm_X | 13294263..13294459 | 8..204 | 97 | | Minus |
BO13149.5prime Sequence
745 bp (736 high quality bases) assembled on 2006-05-08
> BO13149.5prime
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCC
ACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATC
BO13149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-PA | 1332 | CG1673-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 2510 | CG1673-RA | 373..1101 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13398583..13399004 | 45..466 | 2110 | 100 | Plus |
X | 23542271 | X | 13399329..13399561 | 465..697 | 1165 | 100 | Plus |
X | 23542271 | X | 13399633..13399680 | 698..745 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:12:47 has no hits.
BO13149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:16 Download gff for
BO13149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:20 Download gff for
BO13149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:59 Download gff for
BO13149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 365..1101 | 8..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:48 Download gff for
BO13149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 365..1101 | 8..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:48 Download gff for
BO13149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13398585..13399004 | 47..466 | 100 | -> | Plus |
X | 13399331..13399561 | 467..697 | 100 | -> | Plus |
X | 13399633..13399680 | 698..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:59 Download gff for
BO13149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13292618..13293037 | 47..466 | 100 | -> | Plus |
arm_X | 13293364..13293594 | 467..697 | 100 | -> | Plus |
arm_X | 13293666..13293713 | 698..745 | 100 | | Plus |
BO13149.complete Sequence
1363 bp assembled on 2006-10-11
GenBank Submission: FJ632694
> BO13149.complete
GAAGTTATCAGTCGACATGACGACCAAAATGGCAATTAACGCAAAGGATA
TTTTCCGCAATCAGCATCGCCTGATCCGCTTCCTCGAGCAGTCGATCCGG
TTGTGCAGCAACCAGTCTCTGAAAGCCGCCCAAGCGGCACAGTTGCAACA
GAAATCGTCGGCGGACTTCGAGATCACCGCCTCGCTGGACGCCCAATACA
CCAGTGCCCCGGAGCCCATTAAGCATGACAAGAATCTGGGTCATCAGTTC
CGTGCCTCACAGATTTCCGTGCGACTGGCCGCACCGGAGCAACTGCAGCC
CAAGCCGGACAACGATGAGGAATTGGGTTTCGGCCGCCTATTCACCGATC
ACATGCTCAAGATCTACTACCACAAGAGTTTGGGCGGATGGCAGCGACCG
GAGATTACGCCGCTGGAGAATCTAGTGATGCATCCCGCCGCCAAGGTCCT
GCACTACGCCGTTGAGCTCTTTGAGGGCATGAAGGCGTACCGCGGCGTCG
ATGGCAAGATCCGCATCTTCCGGCCGGACATGAACATGAACCGCATGAAC
CTGGCCGCCCAGCGATCCGGTCTGCCCACCTTCGAGGGCAAGGAGTTCGT
CCAGTGCCTGTCCCGCCTGCTGTCCATTGATTCCGAGTGGGTTCCTCACA
CGGACACCGCCAGCTTGTACATCCGCCCCACACTGATCGGCATTGATCCC
ACACTGGGAGTTGCTTCCTCCGACTCGGCCCTGCTCTACACGATCCTCAG
CCCCGTGGGCAGTTACTTTAAGACAGGCTCGTCCGGTGCCGTCTCCCTGC
TGGCCGATCCCAGTTATGTTCGTGCCTGGCCAGGCGGCGTGGGCAATCGC
AAAATGGGCTCCAACTACGCACCCACAATCAATGTGCAGAAGGAGGCGGC
CGCCAAGGGACTGCAGCAGGTGCTGTGGCTCTACGGCGAGGATCATCAGC
TAACCGAAGTGGGCACCATGAACATCTTTATGTTCTTCGTGAACGATCAA
GGAGAACAAGAACTGGTTACCCCACCGCTGAGCGGTCTAATCCTGCCCGG
TATCACCCGCGACTCCATCCTGCGCATGACCCGCCAGTGGGGCAAGTTTA
AGGTTAGCGAGGCGAACATCACCATGCCCATGGTCTGTGAGCTCCTCAAC
CAGGGAAGGCTGCTGGAGCTCTTTGGTGCGGGAACGGCGTGCGTGGTTAG
CCCCGTGAACAGGATCAGCTACCTTGGCCAGGATCTGTATATACCCACCA
TGGAGCAGGAGAAGCCCGTTCACGAGCTGATCCGCGAAACGCTCACCGAC
ATTCAGTACGGTCGGGTGGATCATCCGTGGGCGGTGGTGATCGACGCAAG
CTTTCTAGACCAT
BO13149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 1332 | CG1673-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-RA | 2510 | CG1673-RA | 373..1701 | 17..1345 | 6645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13398583..13399004 | 45..466 | 2110 | 100 | Plus |
X | 23542271 | X | 13399633..13399939 | 698..1004 | 1535 | 100 | Plus |
X | 23542271 | X | 13399329..13399561 | 465..697 | 1165 | 100 | Plus |
X | 23542271 | X | 13400229..13400415 | 1159..1345 | 935 | 100 | Plus |
X | 23542271 | X | 13400005..13400161 | 1003..1159 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:47 has no hits.
BO13149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:45 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 1..1332 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:34 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 371..1718 | 8..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:59 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 373..1701 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:45 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 371..1718 | 8..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:08 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1673-RA | 373..1701 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:08 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13400230..13400415 | 1160..1347 | 98 | | Plus |
X | 13397271..13397300 | 17..46 | 100 | -> | Plus |
X | 13398585..13399004 | 47..466 | 100 | -> | Plus |
X | 13399331..13399561 | 467..697 | 100 | -> | Plus |
X | 13399633..13399939 | 698..1004 | 100 | -> | Plus |
X | 13400007..13400161 | 1005..1159 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:59 Download gff for
BO13149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13291304..13291333 | 17..46 | 100 | -> | Plus |
arm_X | 13292618..13293037 | 47..466 | 100 | -> | Plus |
arm_X | 13293364..13293594 | 467..697 | 100 | -> | Plus |
arm_X | 13293666..13293972 | 698..1004 | 100 | -> | Plus |
arm_X | 13294040..13294194 | 1005..1159 | 100 | -> | Plus |
arm_X | 13294263..13294448 | 1160..1347 | 98 | | Plus |
BO13149.pep Sequence
Translation from 16 to 1363
> BO13149.pep
MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQQKSSAD
FEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDND
EELGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVE
LFEGMKAYRGVDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSR
LLSIDSEWVPHTDTASLYIRPTLIGIDPTLGVASSDSALLYTILSPVGSY
FKTGSSGAVSLLADPSYVRAWPGGVGNRKMGSNYAPTINVQKEAAAKGLQ
QVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELVTPPLSGLILPGITRDS
ILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTACVVSPVNRI
SYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVIDASFLDH
BO13149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1673-PA | 443 | CG1673-PA | 1..443 | 1..443 | 2299 | 100 | Plus |