Clone Sequence Records
BO13154.3prime Sequence
558 bp (557 high quality bases) assembled on 2006-05-08
> BO13154.3prime
ATGGTCTAGAAAGCTTGCCAGAAAGTCGATTTTGCCCACACTCTCTTTAT
CCGCAACGGTCTCCACCAGCCAATCGAGAACATCCGGTACGGAGCAATAG
ACTCCGGGATATTTCTCACGGGCACAGCCCGTTCCCCAGGACACAATGCC
CAGGAGTGTGTTGTTGTAGACCAGCGGACCACCGGAATCTCCCTGGCATG
CATCCTTTCCACCTCCGTTGACTCCGGCGCAAAGCATACGACTGGTCAGC
ATAATGGAATAGGCGTTCTTGCAGTTCGAGTTGTCCACCACATTAACGCT
GACCTCCTGCAGGACGTCGGAGATGGTTCCGCCTTCGCTGGTGGTTCCCC
AGCCCGTCACGGTAACGGGTGTATCATGATCGGGCCGCTCCTTGGCCAAC
TCAATCGGCTGCACGGCGTCGTTGAACTCGAAATCCCCATCCAGGATCAG
AATTGCCGCATCGTAGTCGTTGTTCAGAGTGCGATACTTGGGATGAATGA
TGATCTCACGGACTTCCAACTCCTGCTGCGGACCCGTGGGGAACCAGATG
TTCGAGGA
BO13154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12350-PA | 819 | lambdaTry-RA | 277..816 | 558..19 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 952 | CG12350-RA | 297..836 | 558..19 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11337136..11337675 | 558..19 | 2700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:17:13 has no hits.
BO13154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:25 Download gff for
BO13154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12350-PA | 278..819 | 15..557 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:32 Download gff for
BO13154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12350-PA | 278..819 | 15..557 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:11 Download gff for
BO13154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 298..839 | 15..557 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:38 Download gff for
BO13154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 298..839 | 15..557 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:38 Download gff for
BO13154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11337137..11337678 | 15..557 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:11 Download gff for
BO13154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7224642..7225183 | 15..557 | 99 | | Minus |
BO13154.5prime Sequence
668 bp (606 high quality bases) assembled on 2006-05-08
> BO13154.5prime
GAAGTTATCAGTCGACATGTCACGGATTTTGGTTGTGTTTCTGGTGCTCG
GAGTGGGCTGCTCCCTGGCAGATCCTATATACCGGAACGAAGAGGTTCAT
ATACCGAAGCTCGATGGACGCATTGTCGGTGGACAGGACACGAACATCAC
CCAATATCCGCATCAGATCTCGATGAGGTATAGAGGAAATCACCGATGCG
GAGGCACAATTTACAGATCAAACCAGATCATCAGTGCTGCCCATTGTGTA
AACACCTTGTCCGGCCCGGAAAACCTTACCATTGTGGCTGGTTCCTCGAA
CATCTGGTTCCCCACGGGTCCGCAGCAGGAGTTGGAAGTCCGTGAGATCA
TCATTCATCCCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATT
CTGATCCTGGATGGGGATTTCGAGTTCAACGACGCCGTGCAGCCGATTGA
GTTGGCCAAGGAGCGGCCCGATCATGATACACCCGTTACCGTGACGGGCT
GGGGAACCACCAGCGAAGGCGGAACCATCTCCGACGTCCTGCAGGAGGTC
AGCGTTAATGTGGTGGACAACTCGAACTGCAAGAACGCCTATTCCATTAT
GCTGACCAGTCGTATGCTTTGCGCCGGAGTCAACGGAGGTGGAAAGGATG
CATGCCAGGGAGATTCCG
BO13154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12350-PA | 819 | lambdaTry-RA | 1..652 | 17..668 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 952 | CG12350-RA | 21..672 | 17..668 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11336860..11337511 | 17..668 | 3260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:22 has no hits.
BO13154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:26 Download gff for
BO13154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12350-PA | 1..652 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:34 Download gff for
BO13154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12350-PA | 1..652 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:15 Download gff for
BO13154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 15..672 | 12..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:56 Download gff for
BO13154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 15..672 | 12..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:56 Download gff for
BO13154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11336854..11337511 | 12..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:15 Download gff for
BO13154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7224359..7225016 | 12..668 | 99 | | Plus |
BO13154.complete Sequence
850 bp assembled on 2006-10-11
GenBank Submission: FJ632696
> BO13154.complete
GAAGTTATCAGTCGACATGTCACGGATTTTGGTTGTGTTTCTGGTGCTCG
GAGTGGGCTGCTCCCTGGCAGATCCTATATACCGGAACGAAGAGGTTCAT
ATACCGAAGCTCGATGGACGCATTGTCGGTGGACAGGACACGAACATCAC
CCAATATCCGCATCAGATCTCGATGAGGTATAGAGGAAATCACCGATGCG
GAGGCACAATTTACAGATCAAACCAGATCATCAGTGCTGCCCATTGTGTA
AACACCTTGTCCGGCCCGGAAAACCTTACCATTGTGGCTGGTTCCTCGAA
CATCTGGTTCCCCACGGGTCCGCAGCAGGAGTTGGAAGTCCGTGAGATCA
TCATTCATCCCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATT
CTGATCCTGGATGGGGATTTCGAGTTCAACGACGCCGTGCAGCCGATTGA
GTTGGCCAAGGAGCGGCCCGATCATGATACACCCGTTACCGTGACGGGCT
GGGGAACCACCAGCGAAGGCGGAACCATCTCCGACGTCCTGCAGGAGGTC
AGCGTTAATGTGGTGGACAACTCGAACTGCAAGAACGCCTATTCCATTAT
GCTGACCAGTCGTATGCTTTGCGCCGGAGTCAACGGAGGTGGAAAGGATG
CATGCCAGGGAGATTCCGGTGGTCCGCTGGTCTACAACAACACACTCCTG
GGCATTGTGTCCTGGGGAACGGGCTGTGCCCGTGAGAAATATCCCGGAGT
CTATTGCTCCGTACCGGATGTTCTCGATTGGCTGGTGGAGACCGTTGCGG
ATAAAGAGAGTGTGGGCAAAATCGACTTTCTGGCAAGCTTTCTAGACCAT
BO13154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 819 | CG12350-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-RA | 952 | CG12350-RA | 21..836 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11336860..11337675 | 17..832 | 4080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:47:49 has no hits.
BO13154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:47 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 1..819 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:38 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 7..831 | 12..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:39 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 21..836 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:47 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 7..831 | 12..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:11 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lambdaTry-RA | 21..836 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:11 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11336860..11337675 | 17..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:39 Download gff for
BO13154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7224365..7225180 | 17..834 | 99 | | Plus |
BO13154.pep Sequence
Translation from 16 to 850
> BO13154.pep
MSRILVVFLVLGVGCSLADPIYRNEEVHIPKLDGRIVGGQDTNITQYPHQ
ISMRYRGNHRCGGTIYRSNQIISAAHCVNTLSGPENLTIVAGSSNIWFPT
GPQQELEVREIIIHPKYRTLNNDYDAAILILDGDFEFNDAVQPIELAKER
PDHDTPVTVTGWGTTSEGGTISDVLQEVSVNVVDNSNCKNAYSIMLTSRM
LCAGVNGGGKDACQGDSGGPLVYNNTLLGIVSWGTGCAREKYPGVYCSVP
DVLDWLVETVADKESVGKIDFLASFLDH
BO13154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lambdaTry-PA | 272 | CG12350-PA | 1..272 | 1..272 | 1449 | 100 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 5..250 | 7..257 | 468 | 42 | Plus |
| deltaTry-PA | 253 | CG12351-PA | 5..250 | 7..257 | 468 | 42 | Plus |
| CG30031-PA | 253 | CG30031-PA | 5..250 | 7..257 | 468 | 42 | Plus |
| CG30025-PA | 253 | CG30025-PA | 5..250 | 7..257 | 468 | 42 | Plus |
