Clone Sequence Records
BO13163.3prime Sequence
679 bp (624 high quality bases) assembled on 2006-05-08
> BO13163.3prime
ATGGTCTAGAAAGCTTGCGTCCACGTAGAATTGCTCTACAGGAACATTCT
TCAGGAGCTGGTTGGCGAGTTTGCCGAACTCGCTAGCCAATTTTTTCTGC
AATTGAGCCTGCATAGCCTCCAAAACGACTTGAGAGTTTTCCCGCAGAAA
CAGATTGGTGGCCTCCAGCAGAATTCGATTGTTGTTGAAGGCACCTGAGA
TGCTCATTTTCACATCCTTCACATCCAGAACCAAGCTGAGAGCATCGATG
TGGAGGTAGTTAGCGCCCTTGAAGGCGTGAATGGATGTCTTTCCTGTGAG
ATCGGCACTCACACCCTCGAAGTTAGCATGGAAGTCCCCACCTCCGGAGG
CGGGCAGGATCAGCAGGACCCCGGAGCTCGTGTATTTAGCCTCAATCTTT
AGCTTGGGCATCACGATCTTCGCCTTGAAGGGCTCGCTTCCTTCGCTCAG
TTTCAGGGATGTCACCTTGAAGTTGCTGGCCCCGAAGGCCTCCATGTTCT
TCAGCGTGATCTTATACCCCTGGGGACCCTCTGTTAACTGCAGGGCAAGG
GTGTCCATCTTAAAGGGCTCCACAGAGGGCAGCTGAATATCAGGAATGCC
ATTGGCCAAATATGGCTTTAGGTGTTCAATAGCTCCGATAAAACAGTCCA
CCAATTTCGGGTCGTTCCTATGACATTGT
BO13163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-PA | 741 | CG1124-RA | 78..738 | 679..19 | 3280 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 1116 | CG1124-RA | 217..877 | 679..19 | 3290 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4967618..4968035 | 585..168 | 2090 | 100 | Minus |
3R | 32079331 | 3R | 4968098..4968246 | 167..19 | 745 | 100 | Minus |
3R | 32079331 | 3R | 4967142..4967238 | 679..583 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:22:17 has no hits.
BO13163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:42 Download gff for
BO13163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-PA | 78..741 | 18..679 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:56 Download gff for
BO13163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-PA | 78..741 | 18..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:20:03 Download gff for
BO13163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 217..885 | 10..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:49 Download gff for
BO13163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 217..885 | 10..679 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:49 Download gff for
BO13163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4967142..4967238 | 583..679 | 98 | -> | Minus |
3R | 4967621..4968035 | 168..582 | 100 | -> | Minus |
3R | 4968098..4968254 | 10..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:20:03 Download gff for
BO13163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 792864..792960 | 583..679 | 98 | -> | Minus |
arm_3R | 793343..793757 | 168..582 | 100 | -> | Minus |
arm_3R | 793820..793976 | 10..167 | 97 | | Minus |
BO13163.5prime Sequence
698 bp (539 high quality bases) assembled on 2006-05-08
> BO13163.5prime
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGAAGGATGTGAAAATGAGCATCTCAGGTGCCTTCAACAACAATCGAAT
TCTGCTGGAGGCCACCAATCTGTTTCTGCGGGAAAACTCCTCAAGTCGTT
TTGGAGGCTATGCAGGCTCAATTGCAAAAAAAATTGGCTAGCGAGTTC
BO13163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-PA | 741 | CG1124-RA | 1..623 | 17..639 | 3115 | 100 | Plus |
CG1124-PA | 741 | CG1124-RA | 623..681 | 640..698 | 270 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 1116 | CG1124-RA | 140..820 | 17..698 | 3370 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4967618..4968035 | 188..605 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 4967129..4967238 | 81..190 | 550 | 100 | Plus |
3R | 32079331 | 3R | 4968098..4968189 | 606..698 | 400 | 97.8 | Plus |
3R | 32079331 | 3R | 4965584..4965647 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:35:33 has no hits.
BO13163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:43 Download gff for
BO13163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-PA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:58 Download gff for
BO13163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-PA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:59:33 Download gff for
BO13163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 134..820 | 10..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:09 Download gff for
BO13163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 134..820 | 10..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:09 Download gff for
BO13163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4965578..4965647 | 10..80 | 97 | -> | Plus |
3R | 4967129..4967238 | 81..190 | 100 | -> | Plus |
3R | 4967621..4968035 | 191..605 | 100 | -> | Plus |
3R | 4968098..4968189 | 606..698 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:59:33 Download gff for
BO13163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 791300..791369 | 10..80 | 97 | -> | Plus |
arm_3R | 792851..792960 | 81..190 | 100 | -> | Plus |
arm_3R | 793343..793757 | 191..605 | 100 | -> | Plus |
arm_3R | 793820..793911 | 606..698 | 97 | | Plus |
BO13163.complete Sequence
772 bp assembled on 2006-10-11
GenBank Submission: FJ632697
> BO13163.complete
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGAAGGATGTGAAAATGAGCATCTCAGGTGCCTTCAACAACAATCGAAT
TCTGCTGGAGGCCACCAATCTGTTTCTGCGGGAAAACTCTCAAGTCGTTT
TGGAGGCTATGCAGGCTCAATTGCAGAAAAAATTGGCTAGCGAGTTCGGC
AAACTCGCCAACCAGCTCCTGAAGAATGTTCCTGTAGAGCAATTCTACGT
GGACGCAAGCTTTCTAGACCAT
BO13163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 741 | CG1124-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-RA | 1116 | CG1124-RA | 140..877 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4967618..4968035 | 188..605 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 4968098..4968246 | 606..754 | 745 | 100 | Plus |
3R | 32079331 | 3R | 4967129..4967238 | 81..190 | 550 | 100 | Plus |
3R | 32079331 | 3R | 4965584..4965647 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:39:26 has no hits.
BO13163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:48 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 1..741 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:40 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 132..883 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:52 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 140..877 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:48 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 132..883 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:07 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1124-RA | 140..877 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:07 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4965584..4965647 | 17..80 | 100 | -> | Plus |
3R | 4967129..4967238 | 81..190 | 100 | -> | Plus |
3R | 4967621..4968035 | 191..605 | 100 | -> | Plus |
3R | 4968098..4968246 | 606..756 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:52 Download gff for
BO13163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 791306..791369 | 17..80 | 100 | -> | Plus |
arm_3R | 792851..792960 | 81..190 | 100 | -> | Plus |
arm_3R | 793343..793757 | 191..605 | 100 | -> | Plus |
arm_3R | 793820..793968 | 606..756 | 98 | | Plus |
BO13163.pep Sequence
Translation from 16 to 772
> BO13163.pep
MNKAVCLVIVIQALRMVQAETPPYIKQCHRNDPKLVDCFIGAIEHLKPYL
ANGIPDIQLPSVEPFKMDTLALQLTEGPQGYKITLKNMEAFGASNFKVTS
LKLSEGSEPFKAKIVMPKLKIEAKYTSSGVLLILPASGGGDFHANFEGVS
ADLTGKTSIHAFKGANYLHIDALSLVLDVKDVKMSISGAFNNNRILLEAT
NLFLRENSQVVLEAMQAQLQKKLASEFGKLANQLLKNVPVEQFYVDASFL
DH
BO13163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1124-PA | 246 | CG1124-PA | 1..246 | 1..246 | 1243 | 100 | Plus |
CG2016-PD | 249 | CG2016-PD | 4..245 | 3..243 | 370 | 29.8 | Plus |
CG2016-PB | 249 | CG2016-PB | 4..245 | 3..243 | 370 | 29.8 | Plus |
CG2016-PE | 254 | CG2016-PE | 4..250 | 3..243 | 360 | 29.6 | Plus |
CG14661-PB | 246 | CG14661-PB | 12..244 | 5..244 | 318 | 28.3 | Plus |