Clone BO13163 Report

Search the DGRC for BO13163

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG1124-RA
Protein status:BO13163.pep: validated full length
Sequenced Size:772

Clone Sequence Records

BO13163.3prime Sequence

679 bp (624 high quality bases) assembled on 2006-05-08

> BO13163.3prime
ATGGTCTAGAAAGCTTGCGTCCACGTAGAATTGCTCTACAGGAACATTCT
TCAGGAGCTGGTTGGCGAGTTTGCCGAACTCGCTAGCCAATTTTTTCTGC
AATTGAGCCTGCATAGCCTCCAAAACGACTTGAGAGTTTTCCCGCAGAAA
CAGATTGGTGGCCTCCAGCAGAATTCGATTGTTGTTGAAGGCACCTGAGA
TGCTCATTTTCACATCCTTCACATCCAGAACCAAGCTGAGAGCATCGATG
TGGAGGTAGTTAGCGCCCTTGAAGGCGTGAATGGATGTCTTTCCTGTGAG
ATCGGCACTCACACCCTCGAAGTTAGCATGGAAGTCCCCACCTCCGGAGG
CGGGCAGGATCAGCAGGACCCCGGAGCTCGTGTATTTAGCCTCAATCTTT
AGCTTGGGCATCACGATCTTCGCCTTGAAGGGCTCGCTTCCTTCGCTCAG
TTTCAGGGATGTCACCTTGAAGTTGCTGGCCCCGAAGGCCTCCATGTTCT
TCAGCGTGATCTTATACCCCTGGGGACCCTCTGTTAACTGCAGGGCAAGG
GTGTCCATCTTAAAGGGCTCCACAGAGGGCAGCTGAATATCAGGAATGCC
ATTGGCCAAATATGGCTTTAGGTGTTCAATAGCTCCGATAAAACAGTCCA
CCAATTTCGGGTCGTTCCTATGACATTGT

BO13163.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-PA 741 CG1124-RA 78..738 679..19 3280 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 1116 CG1124-RA 217..877 679..19 3290 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4967618..4968035 585..168 2090 100 Minus
3R 32079331 3R 4968098..4968246 167..19 745 100 Minus
3R 32079331 3R 4967142..4967238 679..583 470 99 Minus
Blast to na_te.dros performed on 2015-02-10 17:22:17 has no hits.

BO13163.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:42 Download gff for BO13163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-PA 78..741 18..679 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:56 Download gff for BO13163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-PA 78..741 18..679 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:20:03 Download gff for BO13163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 217..885 10..679 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:49 Download gff for BO13163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 217..885 10..679 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:49 Download gff for BO13163.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4967142..4967238 583..679 98 -> Minus
3R 4967621..4968035 168..582 100 -> Minus
3R 4968098..4968254 10..167 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:20:03 Download gff for BO13163.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 792864..792960 583..679 98 -> Minus
arm_3R 793343..793757 168..582 100 -> Minus
arm_3R 793820..793976 10..167 97   Minus

BO13163.5prime Sequence

698 bp (539 high quality bases) assembled on 2006-05-08

> BO13163.5prime
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGAAGGATGTGAAAATGAGCATCTCAGGTGCCTTCAACAACAATCGAAT
TCTGCTGGAGGCCACCAATCTGTTTCTGCGGGAAAACTCCTCAAGTCGTT
TTGGAGGCTATGCAGGCTCAATTGCAAAAAAAATTGGCTAGCGAGTTC

BO13163.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-PA 741 CG1124-RA 1..623 17..639 3115 100 Plus
CG1124-PA 741 CG1124-RA 623..681 640..698 270 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 1116 CG1124-RA 140..820 17..698 3370 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4967618..4968035 188..605 2090 100 Plus
3R 32079331 3R 4967129..4967238 81..190 550 100 Plus
3R 32079331 3R 4968098..4968189 606..698 400 97.8 Plus
3R 32079331 3R 4965584..4965647 17..80 320 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:35:33 has no hits.

BO13163.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:43 Download gff for BO13163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-PA 1..681 17..698 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:39:58 Download gff for BO13163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-PA 1..681 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:59:33 Download gff for BO13163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 134..820 10..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:09 Download gff for BO13163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 134..820 10..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:09 Download gff for BO13163.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4965578..4965647 10..80 97 -> Plus
3R 4967129..4967238 81..190 100 -> Plus
3R 4967621..4968035 191..605 100 -> Plus
3R 4968098..4968189 606..698 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:59:33 Download gff for BO13163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 791300..791369 10..80 97 -> Plus
arm_3R 792851..792960 81..190 100 -> Plus
arm_3R 793343..793757 191..605 100 -> Plus
arm_3R 793820..793911 606..698 97   Plus

BO13163.complete Sequence

772 bp assembled on 2006-10-11

GenBank Submission: FJ632697

> BO13163.complete
GAAGTTATCAGTCGACATGAATAAAGCGGTGTGCCTAGTAATCGTGATCC
AAGCATTGCGGATGGTGCAGGCCGAGACCCCGCCCTATATTAAACAATGT
CATAGGAACGACCCGAAATTGGTGGACTGCTTTATCGGAGCTATTGAACA
CCTAAAGCCATATTTGGCCAATGGCATTCCTGATATTCAGCTGCCCTCTG
TGGAGCCCTTTAAGATGGACACCCTTGCCCTGCAGTTAACAGAGGGTCCC
CAGGGGTATAAGATCACGCTGAAGAACATGGAGGCCTTCGGGGCCAGCAA
CTTCAAGGTGACATCCCTGAAACTGAGCGAAGGAAGCGAGCCCTTCAAGG
CGAAGATCGTGATGCCCAAGCTAAAGATTGAGGCTAAATACACGAGCTCC
GGGGTCCTGCTGATCCTGCCCGCCTCCGGAGGTGGGGACTTCCATGCTAA
CTTCGAGGGTGTGAGTGCCGATCTCACAGGAAAGACATCCATTCACGCCT
TCAAGGGCGCTAACTACCTCCACATCGATGCTCTCAGCTTGGTTCTGGAT
GTGAAGGATGTGAAAATGAGCATCTCAGGTGCCTTCAACAACAATCGAAT
TCTGCTGGAGGCCACCAATCTGTTTCTGCGGGAAAACTCTCAAGTCGTTT
TGGAGGCTATGCAGGCTCAATTGCAGAAAAAATTGGCTAGCGAGTTCGGC
AAACTCGCCAACCAGCTCCTGAAGAATGTTCCTGTAGAGCAATTCTACGT
GGACGCAAGCTTTCTAGACCAT

BO13163.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 741 CG1124-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-RA 1116 CG1124-RA 140..877 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4967618..4968035 188..605 2090 100 Plus
3R 32079331 3R 4968098..4968246 606..754 745 100 Plus
3R 32079331 3R 4967129..4967238 81..190 550 100 Plus
3R 32079331 3R 4965584..4965647 17..80 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:39:26 has no hits.

BO13163.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:48 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 1..741 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:40 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 132..883 10..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:52 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 140..877 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:48 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 132..883 10..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:07 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
CG1124-RA 140..877 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:07 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4965584..4965647 17..80 100 -> Plus
3R 4967129..4967238 81..190 100 -> Plus
3R 4967621..4968035 191..605 100 -> Plus
3R 4968098..4968246 606..756 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:52 Download gff for BO13163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 791306..791369 17..80 100 -> Plus
arm_3R 792851..792960 81..190 100 -> Plus
arm_3R 793343..793757 191..605 100 -> Plus
arm_3R 793820..793968 606..756 98   Plus

BO13163.pep Sequence

Translation from 16 to 772

> BO13163.pep
MNKAVCLVIVIQALRMVQAETPPYIKQCHRNDPKLVDCFIGAIEHLKPYL
ANGIPDIQLPSVEPFKMDTLALQLTEGPQGYKITLKNMEAFGASNFKVTS
LKLSEGSEPFKAKIVMPKLKIEAKYTSSGVLLILPASGGGDFHANFEGVS
ADLTGKTSIHAFKGANYLHIDALSLVLDVKDVKMSISGAFNNNRILLEAT
NLFLRENSQVVLEAMQAQLQKKLASEFGKLANQLLKNVPVEQFYVDASFL
DH

BO13163.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1124-PA 246 CG1124-PA 1..246 1..246 1243 100 Plus
CG2016-PD 249 CG2016-PD 4..245 3..243 370 29.8 Plus
CG2016-PB 249 CG2016-PB 4..245 3..243 370 29.8 Plus
CG2016-PE 254 CG2016-PE 4..250 3..243 360 29.6 Plus
CG14661-PB 246 CG14661-PB 12..244 5..244 318 28.3 Plus