Clone BO13167 Report

Search the DGRC for BO13167

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG30217-RA
Protein status:BO13167.pep: validated full length
Sequenced Size:505

Clone Sequence Records

BO13167.3prime Sequence

503 bp (502 high quality bases) assembled on 2006-05-08

> BO13167.3prime
ATGGTCTAGAAAGCTTGCCTGTCTTTTCCATGCCCCCAAGAGGTAACCAC
ACTTGCCGCAGATGACCTTGCAATCGTTGGTGGAGCGCCTCGGGCAGCAG
GGATAGATGGGCAGCAGGGCAAAGCAGCACATGGTAAGGAGTCGCTCCAG
GCGGACTCCCTGCTCGTGCAATCGCTCGTGGCACTCCGGACAGTACATCT
GGCGGAGGCAACTAATGTTGGTGGCAGCGGGCGGCGGAGGTGATACCTTC
TCGGCCAGTTGGCCTGTGGAGTTGCTCTTCCGGCAGAAGTAGGTATCCGG
CTCGGAGTCCTCGGCATAGCCGTAGGGATAGCCTCTGTGTGGGGGCGTGG
CCAGGAGCAGCTGGTCCAAGGCCTGAGCCGACTTCTGCTTGACCTGGCCG
CAGTTGGGGTTCAGGTTAATCTCCACCAGATCCGCTGCGAACTCCTCGTC
GTCGGGAGCTTGAAGGTGGAACTTTAGCTGACGGCTCATGTCGACTGATA
ACT

BO13167.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30217-PA 474 CG30217-RA 1..471 489..19 2355 100 Minus
CG30217-PB 819 CG30217-RB 1..442 489..48 2210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG43326-RB 1229 CG43326-RB 19..491 491..19 2365 100 Minus
CG43325-RC 765 CG43325-RC 156..628 491..19 2365 100 Minus
CG43325-RB 628 CG30217-RB 19..491 491..19 2365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22656617..22656980 128..491 1820 100 Plus
2R 25286936 2R 22656356..22656465 19..128 550 100 Plus
Blast to na_te.dros performed 2015-01-31 12:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6466..6506 425..465 106 73.2 Plus

BO13167.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:46 Download gff for BO13167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30217-PA 1..474 16..489 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:03 Download gff for BO13167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30217-PA 1..474 16..489 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:18 Download gff for BO13167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 10..491 19..503 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:00:54 Download gff for BO13167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RB 10..491 19..503 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:00:54 Download gff for BO13167.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22656356..22656464 19..127 100 <- Plus
2R 22656617..22656989 128..503 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:18 Download gff for BO13167.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543861..18543969 19..127 100 <- Plus
arm_2R 18544122..18544494 128..503 98   Plus

BO13167.5prime Sequence

503 bp (502 high quality bases) assembled on 2006-05-08

> BO13167.5prime
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGGCAAGCTTTCTAG
ACC

BO13167.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG30217-PA 474 CG30217-RA 1..471 17..487 2355 100 Plus
CG30217-PB 819 CG30217-RB 1..442 17..458 2210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG43326-RB 1229 CG43326-RB 19..491 15..487 2365 100 Plus
CG43325-RC 765 CG43325-RC 156..628 15..487 2365 100 Plus
CG43325-RB 628 CG30217-RB 19..491 15..487 2365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22656617..22656980 378..15 1820 100 Minus
2R 25286936 2R 22656356..22656465 487..378 550 100 Minus
Blast to na_te.dros performed 2015-02-12 04:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6466..6506 81..41 106 73.2 Minus

BO13167.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:47 Download gff for BO13167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30217-PA 1..474 17..490 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:05 Download gff for BO13167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30217-PA 1..474 17..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:07 Download gff for BO13167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 10..491 3..487 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:45 Download gff for BO13167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43325-RB 10..491 3..487 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:45 Download gff for BO13167.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22656356..22656464 379..487 100 <- Minus
2R 22656617..22656989 3..378 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:07 Download gff for BO13167.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543861..18543969 379..487 100 <- Minus
arm_2R 18544122..18544494 3..378 98   Minus

BO13167.complete Sequence

505 bp assembled on 2006-10-11

GenBank Submission: FJ632698

> BO13167.complete
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGGCAAGCTTTCTAG
ACCAT

BO13167.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG43325-RC 474 CG43325-PC 1..471 17..487 2355 100 Plus
CG43325-RB 474 CG43325-PB 1..471 17..487 2355 100 Plus
CG43325-RA 474 CG43325-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG43326-RB 1229 CG43326-RB 19..491 15..487 2365 100 Plus
CG43325-RC 765 CG43325-RC 156..628 15..487 2365 100 Plus
CG43325-RB 628 CG30217-RB 19..491 15..487 2365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22656617..22656980 378..15 1820 100 Minus
2R 25286936 2R 22656356..22656465 487..378 550 100 Minus
Blast to na_te.dros performed 2014-11-27 14:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6466..6506 81..41 106 73.2 Minus

BO13167.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:44 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 1..474 17..490 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:54 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 6..487 3..487 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:02 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RA 21..491 17..489 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:45 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
CG30217-RA 6..487 3..487 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:54 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
CG43325-RB 21..491 17..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:54 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22656353..22656464 379..489 98 <- Minus
2R 22656617..22656978 17..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:02 Download gff for BO13167.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18543858..18543969 379..489 98 <- Minus
arm_2R 18544122..18544483 17..378 100   Minus

BO13167.pep Sequence

Translation from 16 to 505

> BO13167.pep
MSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLLLATPP
HRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCLRQMYC
PECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICGKCGYL
LGAWKRQASFLDH

BO13167.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG43325-PC 157 CG43325-PC 1..157 1..157 871 100 Plus
CG43325-PB 157 CG30217-PB 1..157 1..157 871 100 Plus
CG43325-PA 157 CG30217-PA 1..157 1..157 871 100 Plus