Clone Sequence Records
BO13167.3prime Sequence
503 bp (502 high quality bases) assembled on 2006-05-08
> BO13167.3prime
ATGGTCTAGAAAGCTTGCCTGTCTTTTCCATGCCCCCAAGAGGTAACCAC
ACTTGCCGCAGATGACCTTGCAATCGTTGGTGGAGCGCCTCGGGCAGCAG
GGATAGATGGGCAGCAGGGCAAAGCAGCACATGGTAAGGAGTCGCTCCAG
GCGGACTCCCTGCTCGTGCAATCGCTCGTGGCACTCCGGACAGTACATCT
GGCGGAGGCAACTAATGTTGGTGGCAGCGGGCGGCGGAGGTGATACCTTC
TCGGCCAGTTGGCCTGTGGAGTTGCTCTTCCGGCAGAAGTAGGTATCCGG
CTCGGAGTCCTCGGCATAGCCGTAGGGATAGCCTCTGTGTGGGGGCGTGG
CCAGGAGCAGCTGGTCCAAGGCCTGAGCCGACTTCTGCTTGACCTGGCCG
CAGTTGGGGTTCAGGTTAATCTCCACCAGATCCGCTGCGAACTCCTCGTC
GTCGGGAGCTTGAAGGTGGAACTTTAGCTGACGGCTCATGTCGACTGATA
ACT
BO13167.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30217-PA | 474 | CG30217-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
CG30217-PB | 819 | CG30217-RB | 1..442 | 489..48 | 2210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43326-RB | 1229 | CG43326-RB | 19..491 | 491..19 | 2365 | 100 | Minus |
CG43325-RC | 765 | CG43325-RC | 156..628 | 491..19 | 2365 | 100 | Minus |
CG43325-RB | 628 | CG30217-RB | 19..491 | 491..19 | 2365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22656617..22656980 | 128..491 | 1820 | 100 | Plus |
2R | 25286936 | 2R | 22656356..22656465 | 19..128 | 550 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 12:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 425..465 | 106 | 73.2 | Plus |
BO13167.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:46 Download gff for
BO13167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-PA | 1..474 | 16..489 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:03 Download gff for
BO13167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-PA | 1..474 | 16..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:18 Download gff for
BO13167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RA | 10..491 | 19..503 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:00:54 Download gff for
BO13167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RB | 10..491 | 19..503 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:00:54 Download gff for
BO13167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22656356..22656464 | 19..127 | 100 | <- | Plus |
2R | 22656617..22656989 | 128..503 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:18 Download gff for
BO13167.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18543861..18543969 | 19..127 | 100 | <- | Plus |
arm_2R | 18544122..18544494 | 128..503 | 98 | | Plus |
BO13167.5prime Sequence
503 bp (502 high quality bases) assembled on 2006-05-08
> BO13167.5prime
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGGCAAGCTTTCTAG
ACC
BO13167.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30217-PA | 474 | CG30217-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
CG30217-PB | 819 | CG30217-RB | 1..442 | 17..458 | 2210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43326-RB | 1229 | CG43326-RB | 19..491 | 15..487 | 2365 | 100 | Plus |
CG43325-RC | 765 | CG43325-RC | 156..628 | 15..487 | 2365 | 100 | Plus |
CG43325-RB | 628 | CG30217-RB | 19..491 | 15..487 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22656617..22656980 | 378..15 | 1820 | 100 | Minus |
2R | 25286936 | 2R | 22656356..22656465 | 487..378 | 550 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 81..41 | 106 | 73.2 | Minus |
BO13167.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:56:47 Download gff for
BO13167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-PA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:05 Download gff for
BO13167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-PA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:07 Download gff for
BO13167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RA | 10..491 | 3..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:45 Download gff for
BO13167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RB | 10..491 | 3..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:45 Download gff for
BO13167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22656356..22656464 | 379..487 | 100 | <- | Minus |
2R | 22656617..22656989 | 3..378 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:07 Download gff for
BO13167.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18543861..18543969 | 379..487 | 100 | <- | Minus |
arm_2R | 18544122..18544494 | 3..378 | 98 | | Minus |
BO13167.complete Sequence
505 bp assembled on 2006-10-11
GenBank Submission: FJ632698
> BO13167.complete
GAAGTTATCAGTCGACATGAGCCGTCAGCTAAAGTTCCACCTTCAAGCTC
CCGACGACGAGGAGTTCGCAGCGGATCTGGTGGAGATTAACCTGAACCCC
AACTGCGGCCAGGTCAAGCAGAAGTCGGCTCAGGCCTTGGACCAGCTGCT
CCTGGCCACGCCCCCACACAGAGGCTATCCCTACGGCTATGCCGAGGACT
CCGAGCCGGATACCTACTTCTGCCGGAAGAGCAACTCCACAGGCCAACTG
GCCGAGAAGGTATCACCTCCGCCGCCCGCTGCCACCAACATTAGTTGCCT
CCGCCAGATGTACTGTCCGGAGTGCCACGAGCGATTGCACGAGCAGGGAG
TCCGCCTGGAGCGACTCCTTACCATGTGCTGCTTTGCCCTGCTGCCCATC
TATCCCTGCTGCCCGAGGCGCTCCACCAACGATTGCAAGGTCATCTGCGG
CAAGTGTGGTTACCTCTTGGGGGCATGGAAAAGACAGGCAAGCTTTCTAG
ACCAT
BO13167.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43325-RC | 474 | CG43325-PC | 1..471 | 17..487 | 2355 | 100 | Plus |
CG43325-RB | 474 | CG43325-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
CG43325-RA | 474 | CG43325-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43326-RB | 1229 | CG43326-RB | 19..491 | 15..487 | 2365 | 100 | Plus |
CG43325-RC | 765 | CG43325-RC | 156..628 | 15..487 | 2365 | 100 | Plus |
CG43325-RB | 628 | CG30217-RB | 19..491 | 15..487 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22656617..22656980 | 378..15 | 1820 | 100 | Minus |
2R | 25286936 | 2R | 22656356..22656465 | 487..378 | 550 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 81..41 | 106 | 73.2 | Minus |
BO13167.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:44 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-RA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:54 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-RA | 6..487 | 3..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:02 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RA | 21..491 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:45 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30217-RA | 6..487 | 3..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:54 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43325-RB | 21..491 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:54 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22656353..22656464 | 379..489 | 98 | <- | Minus |
2R | 22656617..22656978 | 17..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:02 Download gff for
BO13167.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18543858..18543969 | 379..489 | 98 | <- | Minus |
arm_2R | 18544122..18544483 | 17..378 | 100 | | Minus |
BO13167.pep Sequence
Translation from 16 to 505
> BO13167.pep
MSRQLKFHLQAPDDEEFAADLVEINLNPNCGQVKQKSAQALDQLLLATPP
HRGYPYGYAEDSEPDTYFCRKSNSTGQLAEKVSPPPPAATNISCLRQMYC
PECHERLHEQGVRLERLLTMCCFALLPIYPCCPRRSTNDCKVICGKCGYL
LGAWKRQASFLDH
BO13167.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43325-PC | 157 | CG43325-PC | 1..157 | 1..157 | 871 | 100 | Plus |
CG43325-PB | 157 | CG30217-PB | 1..157 | 1..157 | 871 | 100 | Plus |
CG43325-PA | 157 | CG30217-PA | 1..157 | 1..157 | 871 | 100 | Plus |