Clone BO13174 Report

Search the DGRC for BO13174

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptGstD4-RA
Protein status:BO13174.pep: validated full length
Sequenced Size:679

Clone Sequence Records

BO13174.3prime Sequence

677 bp (650 high quality bases) assembled on 2006-05-08

> BO13174.3prime
ATGGTCTAGAAAGCTTGCCTTTAATGAGGCCTTTTGGGCTTCGTACATTG
TTTTCATTTGTAGCAGACCCTTCCAGTTTTCATCCCATCCGGGTGTGATC
TTTTTGGCATTGGCGTACCAACGTGCCACATTTGGATACTTGCTGATGTC
AAACTCAACCACTTCGAAAGTGGAAACGCTGGAGAGGATGGCGATGTCGG
CCACAGTTAGCTGGCTACCAGCCACGTAGTCCTGGCCCTCCAAGAAAATG
TCCAGGAATTCAAAGGCAGCTTCGACCTTCTTATAATTCTCGGCATTCCC
AAGCTGACCAGTACGGATGAATGGGTAATAGTACTTCATAAAGGAGTCAT
GCAGGGTTCCCATATCGAAGTACAATCGCTGATTGATCAATGCGCGTTTC
TGGGGATCATTGGGAAAAAGGGAGTCGTCCTTGCCGTACTTTTCCACCAG
ATAGACGGCTATGGCACGGGACTCCCAAATGGCGAATCCATTGTCCACCA
GCGTGGGAATGGTGTGCTGGGGATTGAGCTTAAGGAATTCTGGCTTGAGG
TGTTCCCCTTCTGTGATACGCAGTTGCTTTTTGTTCAGTTCCAGTCCAAG
AGCTTTGGCAACCATGATAATGGTGCGGGATCCACTGCTTCGAGGGGAGT
AGTAGAAATCCATGTCGACTGATAACT

BO13174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11512-PA 648 GstD4-RA 1..645 663..19 3225 100 Minus
CG4181-PA 648 GstD2-RA 131..236 533..428 355 93.3 Minus
CG12242-PA 651 GstD5-RA 133..236 531..428 320 92.3 Minus
CG4371-PA 675 GstD7-RA 154..242 519..431 295 93.2 Minus
CG10045-PA 630 GstD1-RA 140..185 527..482 205 97.8 Minus
CG10045-PB 630 GstD1-RB 140..185 527..482 205 97.8 Minus
CG4381-PA 600 GstD3-RA 106..155 510..461 150 92 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 725 CG11512-RA 52..698 665..19 3235 100 Minus
GstD2-RA 734 CG4181-RA 58..623 633..68 940 78.2 Minus
GstD5-RA 840 CG12242-RA 28..628 667..67 920 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12374151..12374797 665..19 3235 100 Minus
3R 32079331 3R 12372028..12372593 633..68 940 77.7 Minus
3R 32079331 3R 12375760..12376360 667..67 890 76.5 Minus
3R 32079331 3R 12378672..12379083 546..138 525 75.7 Minus
3R 32079331 3R 12373185..12373672 560..73 490 73.4 Minus
3R 32079331 3R 12368257..12368457 352..552 480 82.6 Plus
3R 32079331 3R 12364952..12365427 73..548 355 71.6 Plus
3R 32079331 3R 12380071..12380347 628..352 320 74.4 Minus
3R 32079331 3R 12366595..12366777 364..546 300 77.6 Plus
3R 32079331 3R 12377316..12377483 519..352 300 78.6 Minus
3R 32079331 3R 12367978..12368187 73..282 225 73.8 Plus
Blast to na_te.dros performed on 2015-01-31 12:01:26 has no hits.

BO13174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:00 Download gff for BO13174.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-PA 1..648 15..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:20 Download gff for BO13174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11512-PA 1..648 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:02 Download gff for BO13174.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 12..671 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:00:36 Download gff for BO13174.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 47..703 12..671 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:00:36 Download gff for BO13174.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12374146..12374802 12..671 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:02 Download gff for BO13174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8199868..8200524 12..671 99   Minus

BO13174.5prime Sequence

677 bp (626 high quality bases) assembled on 2006-05-08

> BO13174.5prime
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGGCAAGCTTTCTAGACC

BO13174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11512-PA 648 GstD4-RA 1..645 17..661 3225 100 Plus
CG4181-PA 648 GstD2-RA 131..236 147..252 355 93.3 Plus
CG12242-PA 651 GstD5-RA 133..236 149..252 320 92.3 Plus
CG4371-PA 675 GstD7-RA 154..242 161..249 295 93.2 Plus
CG10045-PA 630 GstD1-RA 140..185 153..198 205 97.8 Plus
CG10045-PB 630 GstD1-RB 140..185 153..198 205 97.8 Plus
CG4381-PA 600 GstD3-RA 106..155 170..219 150 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 725 CG11512-RA 52..698 15..661 3235 100 Plus
GstD2-RA 734 CG4181-RA 58..623 47..612 940 78.2 Plus
GstD5-RA 840 CG12242-RA 28..628 13..613 920 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12374151..12374797 15..661 3235 100 Plus
3R 32079331 3R 12372028..12372593 47..612 940 77.7 Plus
3R 32079331 3R 12375760..12376360 13..613 890 76.5 Plus
3R 32079331 3R 12378672..12379083 134..542 525 75.7 Plus
3R 32079331 3R 12373185..12373672 120..607 490 73.4 Plus
3R 32079331 3R 12368257..12368457 328..128 480 82.6 Minus
3R 32079331 3R 12364952..12365427 607..132 355 71.6 Minus
3R 32079331 3R 12380071..12380347 52..328 320 74.4 Plus
3R 32079331 3R 12366595..12366777 316..134 300 77.6 Minus
3R 32079331 3R 12377316..12377483 161..328 300 78.6 Plus
3R 32079331 3R 12367978..12368187 607..398 225 73.8 Minus
Blast to na_te.dros performed on 2015-02-13 08:34:25 has no hits.

BO13174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:01 Download gff for BO13174.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-PA 1..648 17..665 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:21 Download gff for BO13174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11512-PA 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:26 Download gff for BO13174.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 9..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:26 Download gff for BO13174.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 47..703 9..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:26 Download gff for BO13174.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12374146..12374802 9..668 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:26 Download gff for BO13174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8199868..8200524 9..668 99   Plus

BO13174.complete Sequence

679 bp assembled on 2006-10-11

GenBank Submission: FJ632700

> BO13174.complete
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGGCAAGCTTTCTAGACCAT

BO13174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 648 CG11512-PA 1..645 17..661 3225 100 Plus
GstD2-RA 648 CG4181-PA 31..596 47..612 940 77.7 Plus
GstD5-RA 651 CG12242-PA 1..597 17..613 885 76.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-RA 725 CG11512-RA 52..698 15..661 3235 100 Plus
GstD2-RA 734 CG4181-RA 58..623 47..612 940 77.7 Plus
GstD5-RA 840 CG12242-RA 28..628 13..613 890 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12374151..12374797 15..661 3235 100 Plus
3R 32079331 3R 12372028..12372593 47..612 940 77.7 Plus
3R 32079331 3R 12375760..12376360 13..613 890 76.5 Plus
3R 32079331 3R 12378672..12379083 134..542 525 75.7 Plus
3R 32079331 3R 12373185..12373672 120..607 490 73.4 Plus
3R 32079331 3R 12368257..12368457 328..128 480 82.6 Minus
3R 32079331 3R 12364952..12365427 607..132 355 71.6 Minus
3R 32079331 3R 12380071..12380347 52..328 320 74.4 Plus
3R 32079331 3R 12366595..12366777 316..134 300 77.6 Minus
3R 32079331 3R 12377316..12377483 161..328 300 78.6 Plus
3R 32079331 3R 12367978..12368187 607..398 225 73.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:17:32 has no hits.

BO13174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:25 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:11 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 9..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:02 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 52..696 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:25 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 45..701 9..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:54 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
GstD4-RA 54..698 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:54 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12374153..12374797 17..663 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:02 Download gff for BO13174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8199875..8200519 17..663 99   Plus

BO13174.pep Sequence

Translation from 16 to 679

> BO13174.pep
MDFYYSPRSSGSRTIIMVAKALGLELNKKQLRITEGEHLKPEFLKLNPQH
TIPTLVDNGFAIWESRAIAVYLVEKYGKDDSLFPNDPQKRALINQRLYFD
MGTLHDSFMKYYYPFIRTGQLGNAENYKKVEAAFEFLDIFLEGQDYVAGS
QLTVADIAILSSVSTFEVVEFDISKYPNVARWYANAKKITPGWDENWKGL
LQMKTMYEAQKASLKASFLDH

BO13174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
GstD4-PA 215 CG11512-PA 1..215 1..215 1123 100 Plus
GstD2-PA 215 CG4181-PA 1..215 1..215 877 75.3 Plus
GstD5-PA 216 CG12242-PA 1..215 1..215 877 72.6 Plus
GstD1-PB 209 CG10045-PB 2..209 1..208 779 68.8 Plus
GstD1-PA 209 CG10045-PA 2..209 1..208 779 68.8 Plus