Clone Sequence Records
BO13174.3prime Sequence
677 bp (650 high quality bases) assembled on 2006-05-08
> BO13174.3prime
ATGGTCTAGAAAGCTTGCCTTTAATGAGGCCTTTTGGGCTTCGTACATTG
TTTTCATTTGTAGCAGACCCTTCCAGTTTTCATCCCATCCGGGTGTGATC
TTTTTGGCATTGGCGTACCAACGTGCCACATTTGGATACTTGCTGATGTC
AAACTCAACCACTTCGAAAGTGGAAACGCTGGAGAGGATGGCGATGTCGG
CCACAGTTAGCTGGCTACCAGCCACGTAGTCCTGGCCCTCCAAGAAAATG
TCCAGGAATTCAAAGGCAGCTTCGACCTTCTTATAATTCTCGGCATTCCC
AAGCTGACCAGTACGGATGAATGGGTAATAGTACTTCATAAAGGAGTCAT
GCAGGGTTCCCATATCGAAGTACAATCGCTGATTGATCAATGCGCGTTTC
TGGGGATCATTGGGAAAAAGGGAGTCGTCCTTGCCGTACTTTTCCACCAG
ATAGACGGCTATGGCACGGGACTCCCAAATGGCGAATCCATTGTCCACCA
GCGTGGGAATGGTGTGCTGGGGATTGAGCTTAAGGAATTCTGGCTTGAGG
TGTTCCCCTTCTGTGATACGCAGTTGCTTTTTGTTCAGTTCCAGTCCAAG
AGCTTTGGCAACCATGATAATGGTGCGGGATCCACTGCTTCGAGGGGAGT
AGTAGAAATCCATGTCGACTGATAACT
BO13174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11512-PA | 648 | GstD4-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
CG4181-PA | 648 | GstD2-RA | 131..236 | 533..428 | 355 | 93.3 | Minus |
CG12242-PA | 651 | GstD5-RA | 133..236 | 531..428 | 320 | 92.3 | Minus |
CG4371-PA | 675 | GstD7-RA | 154..242 | 519..431 | 295 | 93.2 | Minus |
CG10045-PA | 630 | GstD1-RA | 140..185 | 527..482 | 205 | 97.8 | Minus |
CG10045-PB | 630 | GstD1-RB | 140..185 | 527..482 | 205 | 97.8 | Minus |
CG4381-PA | 600 | GstD3-RA | 106..155 | 510..461 | 150 | 92 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 725 | CG11512-RA | 52..698 | 665..19 | 3235 | 100 | Minus |
GstD2-RA | 734 | CG4181-RA | 58..623 | 633..68 | 940 | 78.2 | Minus |
GstD5-RA | 840 | CG12242-RA | 28..628 | 667..67 | 920 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12374151..12374797 | 665..19 | 3235 | 100 | Minus |
3R | 32079331 | 3R | 12372028..12372593 | 633..68 | 940 | 77.7 | Minus |
3R | 32079331 | 3R | 12375760..12376360 | 667..67 | 890 | 76.5 | Minus |
3R | 32079331 | 3R | 12378672..12379083 | 546..138 | 525 | 75.7 | Minus |
3R | 32079331 | 3R | 12373185..12373672 | 560..73 | 490 | 73.4 | Minus |
3R | 32079331 | 3R | 12368257..12368457 | 352..552 | 480 | 82.6 | Plus |
3R | 32079331 | 3R | 12364952..12365427 | 73..548 | 355 | 71.6 | Plus |
3R | 32079331 | 3R | 12380071..12380347 | 628..352 | 320 | 74.4 | Minus |
3R | 32079331 | 3R | 12366595..12366777 | 364..546 | 300 | 77.6 | Plus |
3R | 32079331 | 3R | 12377316..12377483 | 519..352 | 300 | 78.6 | Minus |
3R | 32079331 | 3R | 12367978..12368187 | 73..282 | 225 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:01:26 has no hits.
BO13174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:00 Download gff for
BO13174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-PA | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:20 Download gff for
BO13174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11512-PA | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:02 Download gff for
BO13174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 12..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:00:36 Download gff for
BO13174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 47..703 | 12..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:00:36 Download gff for
BO13174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12374146..12374802 | 12..671 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:02 Download gff for
BO13174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8199868..8200524 | 12..671 | 99 | | Minus |
BO13174.5prime Sequence
677 bp (626 high quality bases) assembled on 2006-05-08
> BO13174.5prime
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGGCAAGCTTTCTAGACC
BO13174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11512-PA | 648 | GstD4-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG4181-PA | 648 | GstD2-RA | 131..236 | 147..252 | 355 | 93.3 | Plus |
CG12242-PA | 651 | GstD5-RA | 133..236 | 149..252 | 320 | 92.3 | Plus |
CG4371-PA | 675 | GstD7-RA | 154..242 | 161..249 | 295 | 93.2 | Plus |
CG10045-PA | 630 | GstD1-RA | 140..185 | 153..198 | 205 | 97.8 | Plus |
CG10045-PB | 630 | GstD1-RB | 140..185 | 153..198 | 205 | 97.8 | Plus |
CG4381-PA | 600 | GstD3-RA | 106..155 | 170..219 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 725 | CG11512-RA | 52..698 | 15..661 | 3235 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 58..623 | 47..612 | 940 | 78.2 | Plus |
GstD5-RA | 840 | CG12242-RA | 28..628 | 13..613 | 920 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12374151..12374797 | 15..661 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 12372028..12372593 | 47..612 | 940 | 77.7 | Plus |
3R | 32079331 | 3R | 12375760..12376360 | 13..613 | 890 | 76.5 | Plus |
3R | 32079331 | 3R | 12378672..12379083 | 134..542 | 525 | 75.7 | Plus |
3R | 32079331 | 3R | 12373185..12373672 | 120..607 | 490 | 73.4 | Plus |
3R | 32079331 | 3R | 12368257..12368457 | 328..128 | 480 | 82.6 | Minus |
3R | 32079331 | 3R | 12364952..12365427 | 607..132 | 355 | 71.6 | Minus |
3R | 32079331 | 3R | 12380071..12380347 | 52..328 | 320 | 74.4 | Plus |
3R | 32079331 | 3R | 12366595..12366777 | 316..134 | 300 | 77.6 | Minus |
3R | 32079331 | 3R | 12377316..12377483 | 161..328 | 300 | 78.6 | Plus |
3R | 32079331 | 3R | 12367978..12368187 | 607..398 | 225 | 73.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:34:25 has no hits.
BO13174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:01 Download gff for
BO13174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-PA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:21 Download gff for
BO13174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11512-PA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:26 Download gff for
BO13174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:26 Download gff for
BO13174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 47..703 | 9..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:26 Download gff for
BO13174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12374146..12374802 | 9..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:26 Download gff for
BO13174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8199868..8200524 | 9..668 | 99 | | Plus |
BO13174.complete Sequence
679 bp assembled on 2006-10-11
GenBank Submission: FJ632700
> BO13174.complete
GAAGTTATCAGTCGACATGGATTTCTACTACTCCCCTCGAAGCAGTGGAT
CCCGCACCATTATCATGGTTGCCAAAGCTCTTGGACTGGAACTGAACAAA
AAGCAACTGCGTATCACAGAAGGGGAACACCTCAAGCCAGAATTCCTTAA
GCTCAATCCCCAGCACACCATTCCCACGCTGGTGGACAATGGATTCGCCA
TTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTGGAAAAGTACGGCAAG
GACGACTCCCTTTTTCCCAATGATCCCCAGAAACGCGCATTGATCAATCA
GCGATTGTACTTCGATATGGGAACCCTGCATGACTCCTTTATGAAGTACT
ATTACCCATTCATCCGTACTGGTCAGCTTGGGAATGCCGAGAATTATAAG
AAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTTCTTGGAGGGCCAGGA
CTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACATCGCCATCCTCTCCA
GCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATCAGCAAGTATCCAAAT
GTGGCACGTTGGTACGCCAATGCCAAAAAGATCACACCCGGATGGGATGA
AAACTGGAAGGGTCTGCTACAAATGAAAACAATGTACGAAGCCCAAAAGG
CCTCATTAAAGGCAAGCTTTCTAGACCAT
BO13174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 648 | CG11512-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
GstD2-RA | 648 | CG4181-PA | 31..596 | 47..612 | 940 | 77.7 | Plus |
GstD5-RA | 651 | CG12242-PA | 1..597 | 17..613 | 885 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-RA | 725 | CG11512-RA | 52..698 | 15..661 | 3235 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 58..623 | 47..612 | 940 | 77.7 | Plus |
GstD5-RA | 840 | CG12242-RA | 28..628 | 13..613 | 890 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12374151..12374797 | 15..661 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 12372028..12372593 | 47..612 | 940 | 77.7 | Plus |
3R | 32079331 | 3R | 12375760..12376360 | 13..613 | 890 | 76.5 | Plus |
3R | 32079331 | 3R | 12378672..12379083 | 134..542 | 525 | 75.7 | Plus |
3R | 32079331 | 3R | 12373185..12373672 | 120..607 | 490 | 73.4 | Plus |
3R | 32079331 | 3R | 12368257..12368457 | 328..128 | 480 | 82.6 | Minus |
3R | 32079331 | 3R | 12364952..12365427 | 607..132 | 355 | 71.6 | Minus |
3R | 32079331 | 3R | 12380071..12380347 | 52..328 | 320 | 74.4 | Plus |
3R | 32079331 | 3R | 12366595..12366777 | 316..134 | 300 | 77.6 | Minus |
3R | 32079331 | 3R | 12377316..12377483 | 161..328 | 300 | 78.6 | Plus |
3R | 32079331 | 3R | 12367978..12368187 | 607..398 | 225 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:17:32 has no hits.
BO13174.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:25 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:11 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:02 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 52..696 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:25 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 45..701 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:54 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD4-RA | 54..698 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:54 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12374153..12374797 | 17..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:02 Download gff for
BO13174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8199875..8200519 | 17..663 | 99 | | Plus |
BO13174.pep Sequence
Translation from 16 to 679
> BO13174.pep
MDFYYSPRSSGSRTIIMVAKALGLELNKKQLRITEGEHLKPEFLKLNPQH
TIPTLVDNGFAIWESRAIAVYLVEKYGKDDSLFPNDPQKRALINQRLYFD
MGTLHDSFMKYYYPFIRTGQLGNAENYKKVEAAFEFLDIFLEGQDYVAGS
QLTVADIAILSSVSTFEVVEFDISKYPNVARWYANAKKITPGWDENWKGL
LQMKTMYEAQKASLKASFLDH
BO13174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD4-PA | 215 | CG11512-PA | 1..215 | 1..215 | 1123 | 100 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..215 | 1..215 | 877 | 75.3 | Plus |
GstD5-PA | 216 | CG12242-PA | 1..215 | 1..215 | 877 | 72.6 | Plus |
GstD1-PB | 209 | CG10045-PB | 2..209 | 1..208 | 779 | 68.8 | Plus |
GstD1-PA | 209 | CG10045-PA | 2..209 | 1..208 | 779 | 68.8 | Plus |