Clone Sequence Records
BO13175.3prime Sequence
708 bp (620 high quality bases) assembled on 2006-05-08
> BO13175.3prime
ATGGTCTAGAAAGCTTGCATAATAGATTCCAGTCTCCTCCTTTATCCATT
CCAGGTACTTGGTGACCCTAGTGAAGCCAGCCGGTCCTCCAACCTGGCAT
CCGTAAGCGGAGACGAAGGAAGTGATTCCGATAAGCTTATCACCCTCCTT
TGTGACCAGAGGACCACCAGAATCACCCTGGCAGGTGGCCTTTCCGTCCG
GAGTTTCCACACAGATGGTGTTCTCGGAGGCGGTATCAGTTCCGTAGTAA
GCCTGGCACTCCGCCACGGAGATCACTTTCAGATCCACCACTCGCAGATC
CTCCACCACATTGCTGCCATCGTAAATGGCACCCCATCCGGCGGCCTGAA
CCCAATTGTTTTCGTAAGAGTTGTATCGGTCATCCAGGCTGGGAAGCTCT
ATTTTGTTGACCAGGCTGTAGAAGTCCACATGGGGAGTCTTGATCAGGGC
CAAATCATGATCGAGTCCAACGTAGTGGGGATATCTGATGAAGTTCTCGC
TGCTCACTGTGTGGCGGAAGGCAGGTTCGTTGTAGTTGACGGCACCATAG
TACAGTGAAGCCTCATCAGCACCAGCGGTACAGTGGGCAGCAGTGAGCAC
CCAAGTGTGTCCGATTATGGATCCGCCGCACCACCACCAGTTTCCGTTGC
TGTTCAAGCTCACACCCACGATGTAGGGAACCTGACCTCGGACGCCAGGT
TTCCGTTG
BO13175.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31039-PA | 819 | Jon99Ci-RA | 148..816 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 907 | CG31039-RA | 141..831 | 708..19 | 3430 | 99.9 | Minus |
Jon25Bii-RB | 894 | CG8869-RB | 180..286 | 683..577 | 205 | 80.6 | Minus |
Jon25Bii-RA | 884 | CG8869-RA | 180..286 | 683..577 | 205 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29925302..29925855 | 19..572 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 29925912..29926049 | 572..708 | 640 | 99.3 | Plus |
2L | 23513712 | 2L | 4952851..4952957 | 577..683 | 205 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:21:15 has no hits.
BO13175.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:02 Download gff for
BO13175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31039-PA | 126..819 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:23 Download gff for
BO13175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31039-PA | 126..819 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:20:02 Download gff for
BO13175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 141..834 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:41 Download gff for
BO13175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 141..834 | 15..708 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:41 Download gff for
BO13175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29925912..29926049 | 572..708 | 99 | | Plus |
3R | 29925298..29925854 | 15..571 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:20:02 Download gff for
BO13175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25751020..25751576 | 15..571 | 99 | <- | Plus |
arm_3R | 25751634..25751771 | 572..708 | 99 | | Plus |
BO13175.5prime Sequence
670 bp (649 high quality bases) assembled on 2006-05-08
> BO13175.5prime
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTC
CGGACGGAAAGGCCACCTGC
BO13175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31039-PA | 819 | Jon99Ci-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 907 | CG31039-RA | 16..669 | 17..670 | 3270 | 100 | Plus |
Jon25Bii-RB | 894 | CG8869-RB | 136..286 | 124..274 | 260 | 78.9 | Plus |
Jon25Bii-RA | 884 | CG8869-RA | 136..286 | 124..274 | 260 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29925464..29925855 | 670..279 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 29925912..29926174 | 279..17 | 1315 | 100 | Minus |
2L | 23513712 | 2L | 4952851..4953001 | 274..124 | 260 | 78.1 | Minus |
3R | 32079331 | 3R | 30489091..30489233 | 129..274 | 230 | 78.8 | Plus |
3R | 32079331 | 3R | 29924348..29924494 | 274..125 | 220 | 78 | Minus |
3R | 32079331 | 3R | 29922335..29922429 | 125..219 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:49:14 has no hits.
BO13175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:03 Download gff for
BO13175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31039-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:24 Download gff for
BO13175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31039-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:31 Download gff for
BO13175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 7..669 | 8..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:05 Download gff for
BO13175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 7..669 | 8..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:05 Download gff for
BO13175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29925912..29926183 | 8..279 | 98 | | Minus |
3R | 29925464..29925854 | 280..670 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:31 Download gff for
BO13175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25751186..25751576 | 280..670 | 100 | <- | Minus |
arm_3R | 25751634..25751905 | 8..279 | 98 | | Minus |
BO13175.complete Sequence
850 bp assembled on 2006-10-11
GenBank Submission: FJ632701
> BO13175.complete
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTC
CGGACGGAAAGGCCACCTGCCAGGGTGATTCTGGTGGTCCTCTGGTCACA
AAGGAGGGTGATAAGCTTATCGGAATCACTTCCTTCGTCTCCGCTTACGG
ATGCCAGGTTGGAGGACCGGCTGGCTTCACTAGGGTCACCAAGTACCTGG
AATGGATAAAGGAGGAGACTGGAATCTATTATGCAAGCTTTCTAGACCAT
BO13175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 819 | CG31039-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Jon25Bii-RB | 831 | CG8869-PB | 114..264 | 124..274 | 260 | 78.1 | Plus |
Jon25Bii-RA | 831 | CG8869-PA | 114..264 | 124..274 | 260 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-RA | 907 | CG31039-RA | 16..831 | 17..832 | 4080 | 100 | Plus |
Jon25Bii-RB | 894 | CG8869-RB | 136..286 | 124..274 | 260 | 78.1 | Plus |
Jon25Bii-RA | 884 | CG8869-RA | 136..286 | 124..274 | 260 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29925302..29925855 | 832..279 | 2770 | 100 | Minus |
3R | 32079331 | 3R | 29925912..29926174 | 279..17 | 1315 | 100 | Minus |
2L | 23513712 | 2L | 4952851..4953001 | 274..124 | 260 | 78.1 | Minus |
3R | 32079331 | 3R | 30489091..30489233 | 129..274 | 230 | 78.8 | Plus |
3R | 32079331 | 3R | 29924348..29924494 | 274..125 | 220 | 78 | Minus |
3R | 32079331 | 3R | 29922335..29922429 | 125..219 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:53:42 has no hits.
BO13175.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:26 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 1..819 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:13 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 3..830 | 8..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:42 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 16..831 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:26 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 3..830 | 8..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:49 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jon99Ci-RA | 16..831 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:49 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29925300..29925854 | 280..834 | 99 | <- | Minus |
3R | 29925912..29926174 | 17..279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:42 Download gff for
BO13175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25751022..25751576 | 280..834 | 99 | <- | Minus |
arm_3R | 25751634..25751896 | 17..279 | 100 | | Minus |
BO13175.pep Sequence
Translation from 16 to 850
> BO13175.pep
MRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLASEG
QVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYGAVN
YNEPAFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIELPSL
DDRYNSYENNWVQAAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYYGTD
TASENTICVETPDGKATCQGDSGGPLVTKEGDKLIGITSFVSAYGCQVGG
PAGFTRVTKYLEWIKEETGIYYASFLDH
BO13175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jon99Ci-PA | 272 | CG31039-PA | 1..272 | 1..272 | 1471 | 100 | Plus |
Jon99Fi-PA | 267 | CG18030-PA | 1..267 | 1..272 | 722 | 51.5 | Plus |
Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..272 | 717 | 50.7 | Plus |
Jon66Ci-PA | 260 | CG7118-PA | 5..259 | 4..272 | 702 | 52.4 | Plus |
Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..272 | 701 | 50.7 | Plus |