Clone BO13175 Report

Search the DGRC for BO13175

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptJon99Ci-RA
Protein status:BO13175.pep: validated full length
Sequenced Size:850

Clone Sequence Records

BO13175.3prime Sequence

708 bp (620 high quality bases) assembled on 2006-05-08

> BO13175.3prime
ATGGTCTAGAAAGCTTGCATAATAGATTCCAGTCTCCTCCTTTATCCATT
CCAGGTACTTGGTGACCCTAGTGAAGCCAGCCGGTCCTCCAACCTGGCAT
CCGTAAGCGGAGACGAAGGAAGTGATTCCGATAAGCTTATCACCCTCCTT
TGTGACCAGAGGACCACCAGAATCACCCTGGCAGGTGGCCTTTCCGTCCG
GAGTTTCCACACAGATGGTGTTCTCGGAGGCGGTATCAGTTCCGTAGTAA
GCCTGGCACTCCGCCACGGAGATCACTTTCAGATCCACCACTCGCAGATC
CTCCACCACATTGCTGCCATCGTAAATGGCACCCCATCCGGCGGCCTGAA
CCCAATTGTTTTCGTAAGAGTTGTATCGGTCATCCAGGCTGGGAAGCTCT
ATTTTGTTGACCAGGCTGTAGAAGTCCACATGGGGAGTCTTGATCAGGGC
CAAATCATGATCGAGTCCAACGTAGTGGGGATATCTGATGAAGTTCTCGC
TGCTCACTGTGTGGCGGAAGGCAGGTTCGTTGTAGTTGACGGCACCATAG
TACAGTGAAGCCTCATCAGCACCAGCGGTACAGTGGGCAGCAGTGAGCAC
CCAAGTGTGTCCGATTATGGATCCGCCGCACCACCACCAGTTTCCGTTGC
TGTTCAAGCTCACACCCACGATGTAGGGAACCTGACCTCGGACGCCAGGT
TTCCGTTG

BO13175.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31039-PA 819 Jon99Ci-RA 148..816 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 907 CG31039-RA 141..831 708..19 3430 99.9 Minus
Jon25Bii-RB 894 CG8869-RB 180..286 683..577 205 80.6 Minus
Jon25Bii-RA 884 CG8869-RA 180..286 683..577 205 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925302..29925855 19..572 2770 100 Plus
3R 32079331 3R 29925912..29926049 572..708 640 99.3 Plus
2L 23513712 2L 4952851..4952957 577..683 205 79.4 Plus
Blast to na_te.dros performed on 2015-02-10 17:21:15 has no hits.

BO13175.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:02 Download gff for BO13175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31039-PA 126..819 15..708 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:23 Download gff for BO13175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31039-PA 126..819 15..708 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:20:02 Download gff for BO13175.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 141..834 15..708 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:41 Download gff for BO13175.3prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 141..834 15..708 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:41 Download gff for BO13175.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29925912..29926049 572..708 99   Plus
3R 29925298..29925854 15..571 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:20:02 Download gff for BO13175.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25751020..25751576 15..571 99 <- Plus
arm_3R 25751634..25751771 572..708 99   Plus

BO13175.5prime Sequence

670 bp (649 high quality bases) assembled on 2006-05-08

> BO13175.5prime
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTC
CGGACGGAAAGGCCACCTGC

BO13175.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31039-PA 819 Jon99Ci-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 907 CG31039-RA 16..669 17..670 3270 100 Plus
Jon25Bii-RB 894 CG8869-RB 136..286 124..274 260 78.9 Plus
Jon25Bii-RA 884 CG8869-RA 136..286 124..274 260 78.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925464..29925855 670..279 1960 100 Minus
3R 32079331 3R 29925912..29926174 279..17 1315 100 Minus
2L 23513712 2L 4952851..4953001 274..124 260 78.1 Minus
3R 32079331 3R 30489091..30489233 129..274 230 78.8 Plus
3R 32079331 3R 29924348..29924494 274..125 220 78 Minus
3R 32079331 3R 29922335..29922429 125..219 190 80 Plus
Blast to na_te.dros performed on 2015-02-10 20:49:14 has no hits.

BO13175.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:03 Download gff for BO13175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31039-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:24 Download gff for BO13175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31039-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:31 Download gff for BO13175.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 7..669 8..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:05 Download gff for BO13175.5prime
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 7..669 8..670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:05 Download gff for BO13175.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29925912..29926183 8..279 98   Minus
3R 29925464..29925854 280..670 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:31 Download gff for BO13175.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25751186..25751576 280..670 100 <- Minus
arm_3R 25751634..25751905 8..279 98   Minus

BO13175.complete Sequence

850 bp assembled on 2006-10-11

GenBank Submission: FJ632701

> BO13175.complete
GAAGTTATCAGTCGACATGAGGGGTCTTACACTCTTGTCGCTCGCCTTCC
TTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTGGTCCATCCACGC
GATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTATTACCAACGGAAA
CCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTGTGAGCTTGAACA
GCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATCGGACACACTTGG
GTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGAGGCTTCACTGTA
CTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCCACACAGTGAGCA
GCGAGAACTTCATCAGATATCCCCACTACGTTGGACTCGATCATGATTTG
GCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCTGGTCAACAAAAT
AGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACGAAAACAATTGGG
TTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGCAATGTGGTGGAG
GATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGCGGAGTGCCAGGC
TTACTACGGAACTGATACCGCCTCCGAGAACACCATCTGTGTGGAAACTC
CGGACGGAAAGGCCACCTGCCAGGGTGATTCTGGTGGTCCTCTGGTCACA
AAGGAGGGTGATAAGCTTATCGGAATCACTTCCTTCGTCTCCGCTTACGG
ATGCCAGGTTGGAGGACCGGCTGGCTTCACTAGGGTCACCAAGTACCTGG
AATGGATAAAGGAGGAGACTGGAATCTATTATGCAAGCTTTCTAGACCAT

BO13175.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 819 CG31039-PA 1..816 17..832 4080 100 Plus
Jon25Bii-RB 831 CG8869-PB 114..264 124..274 260 78.1 Plus
Jon25Bii-RA 831 CG8869-PA 114..264 124..274 260 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-RA 907 CG31039-RA 16..831 17..832 4080 100 Plus
Jon25Bii-RB 894 CG8869-RB 136..286 124..274 260 78.1 Plus
Jon25Bii-RA 884 CG8869-RA 136..286 124..274 260 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29925302..29925855 832..279 2770 100 Minus
3R 32079331 3R 29925912..29926174 279..17 1315 100 Minus
2L 23513712 2L 4952851..4953001 274..124 260 78.1 Minus
3R 32079331 3R 30489091..30489233 129..274 230 78.8 Plus
3R 32079331 3R 29924348..29924494 274..125 220 78 Minus
3R 32079331 3R 29922335..29922429 125..219 190 80 Plus
Blast to na_te.dros performed on 2014-11-27 00:53:42 has no hits.

BO13175.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:26 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 1..819 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:13 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 3..830 8..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:42 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 16..831 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:26 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 3..830 8..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:49 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
Jon99Ci-RA 16..831 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:49 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29925300..29925854 280..834 99 <- Minus
3R 29925912..29926174 17..279 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:42 Download gff for BO13175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25751022..25751576 280..834 99 <- Minus
arm_3R 25751634..25751896 17..279 100   Minus

BO13175.pep Sequence

Translation from 16 to 850

> BO13175.pep
MRGLTLLSLAFLGVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLASEG
QVPYIVGVSLNSNGNWWWCGGSIIGHTWVLTAAHCTAGADEASLYYGAVN
YNEPAFRHTVSSENFIRYPHYVGLDHDLALIKTPHVDFYSLVNKIELPSL
DDRYNSYENNWVQAAGWGAIYDGSNVVEDLRVVDLKVISVAECQAYYGTD
TASENTICVETPDGKATCQGDSGGPLVTKEGDKLIGITSFVSAYGCQVGG
PAGFTRVTKYLEWIKEETGIYYASFLDH

BO13175.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Jon99Ci-PA 272 CG31039-PA 1..272 1..272 1471 100 Plus
Jon99Fi-PA 267 CG18030-PA 1..267 1..272 722 51.5 Plus
Jon99Fii-PA 267 CG2229-PA 1..267 1..272 717 50.7 Plus
Jon66Ci-PA 260 CG7118-PA 5..259 4..272 702 52.4 Plus
Jon99Ciii-PB 265 CG31362-PB 1..265 1..272 701 50.7 Plus