Clone BO13176 Report

Search the DGRC for BO13176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG7781-RA
Protein status:BO13176.pep: validated full length
Sequenced Size:475

Clone Sequence Records

BO13176.5prime Sequence

473 bp (472 high quality bases) assembled on 2006-05-08

> BO13176.5prime
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTGCAAGCTTTCTAGACC

BO13176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PA 444 CG7781-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 1981 CG7781-RB 397..837 17..457 2205 100 Plus
CG7781-RA 1834 CG7781-RA 250..690 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8322491..8322702 457..246 1060 100 Minus
2L 23513712 2L 8322774..8322949 245..70 880 100 Minus
2L 23513712 2L 8324958..8325013 72..17 280 100 Minus
Blast to na_te.dros performed on 2015-02-12 23:36:04 has no hits.

BO13176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:05 Download gff for BO13176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:26 Download gff for BO13176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:13 Download gff for BO13176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..694 17..462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:26 Download gff for BO13176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..694 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:26 Download gff for BO13176.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8322487..8322702 246..462 99 <- Minus
2L 8322774..8322947 72..245 100 <- Minus
2L 8324959..8325013 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:13 Download gff for BO13176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8322487..8322702 246..462 99 <- Minus
arm_2L 8322774..8322947 72..245 100 <- Minus
arm_2L 8324959..8325013 17..71 100   Minus

BO13176.3prime Sequence

473 bp (472 high quality bases) assembled on 2006-05-08

> BO13176.3prime
ATGGTCTAGAAAGCTTGCACGCTGCAGATACTGACGGGCGCTCAGCAGGA
GGCCCACCATGGCTGCCACGCCCAACGCCGATGCGCCCATCGCTCCGGCT
CCGTTGCAGTTATCCGTATCGCAGGAGCAGACCACCTGCCGACCACCAAA
ACCGGCACGCTGATAGCAATAGTTGGTGGAGGTCTGATTCTGATAGGCAC
AGGTCCTAATCACACGGCTATCCGGGGGCAGGCTGTTCACCGAGAACTCG
ATGATCTGCGTAATCTTGCGGCAGTATGTGGGTATTCCCTTGCCACGGGA
CGAGTACTGCTCATCGCAGTCCTTCAGCAGATTGTCCGGCGGTATGTCCA
GCGCACAGTTGGCGTCTTTGTGGCTGTTGCAGACAAAGCACTTGATGGCA
TATCCTTGCTGCACGGCGATGGCCAAAATCAGCGCACTAATCACATAGAT
GTACTGCATGTCGACTGATAACT

BO13176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PA 444 CG7781-RA 1..441 459..19 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 1981 CG7781-RB 397..837 459..19 2205 100 Minus
CG7781-RA 1834 CG7781-RA 250..690 459..19 2205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8322491..8322702 19..230 1060 100 Plus
2L 23513712 2L 8322774..8322949 231..406 880 100 Plus
2L 23513712 2L 8324958..8325013 404..459 280 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:18:42 has no hits.

BO13176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:04 Download gff for BO13176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:25 Download gff for BO13176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:02 Download gff for BO13176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..694 14..459 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:33 Download gff for BO13176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..694 14..459 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:33 Download gff for BO13176.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8322487..8322702 14..230 99 <- Plus
2L 8322774..8322947 231..404 100 <- Plus
2L 8324959..8325013 405..459 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:02 Download gff for BO13176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8322487..8322702 14..230 99 <- Plus
arm_2L 8322774..8322947 231..404 100 <- Plus
arm_2L 8324959..8325013 405..459 100   Plus

BO13176.complete Sequence

475 bp assembled on 2006-10-11

GenBank Submission: FJ632702

> BO13176.complete
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTGCAAGCTTTCTAGACCAT

BO13176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 444 CG7781-PB 1..441 17..457 2205 100 Plus
CG7781-RA 444 CG7781-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-RB 1981 CG7781-RB 397..837 17..457 2205 100 Plus
CG7781-RA 1834 CG7781-RA 250..690 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8322491..8322702 457..246 1060 100 Minus
2L 23513712 2L 8322774..8322949 245..70 880 100 Minus
2L 23513712 2L 8324958..8325013 72..17 280 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:38:58 has no hits.

BO13176.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:27 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:15 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 287..731 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:40 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..690 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:28 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 287..731 17..462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:42 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
CG7781-RA 250..690 17..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:42 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8322489..8322702 246..459 99 <- Minus
2L 8322774..8322947 72..245 100 <- Minus
2L 8324959..8325013 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:40 Download gff for BO13176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8324959..8325013 17..71 100   Minus
arm_2L 8322489..8322702 246..459 99 <- Minus
arm_2L 8322774..8322947 72..245 100 <- Minus

BO13176.pep Sequence

Translation from 16 to 475

> BO13176.pep
MQYIYVISALILAIAVQQGYAIKCFVCNSHKDANCALDIPPDNLLKDCDE
QYSSRGKGIPTYCRKITQIIEFSVNSLPPDSRVIRTCAYQNQTSTNYCYQ
RAGFGGRQVVCSCDTDNCNGAGAMGASALGVAAMVGLLLSARQYLQRASF
LDH

BO13176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7781-PB 147 CG7781-PB 1..147 1..147 779 100 Plus
CG7781-PA 147 CG7781-PA 1..147 1..147 779 100 Plus
CG14275-PB 148 CG14275-PB 6..148 3..153 150 29.9 Plus
CG14275-PA 148 CG14275-PA 6..148 3..153 150 29.9 Plus
crok-PA 151 CG17218-PA 7..142 5..140 146 32.7 Plus