Clone Sequence Records
BO13176.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-08
> BO13176.5prime
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTGCAAGCTTTCTAGACC
BO13176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-PA | 444 | CG7781-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 1981 | CG7781-RB | 397..837 | 17..457 | 2205 | 100 | Plus |
CG7781-RA | 1834 | CG7781-RA | 250..690 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8322491..8322702 | 457..246 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 8322774..8322949 | 245..70 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8324958..8325013 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:36:04 has no hits.
BO13176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:05 Download gff for
BO13176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:26 Download gff for
BO13176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:13 Download gff for
BO13176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..694 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:26 Download gff for
BO13176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..694 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:26 Download gff for
BO13176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8322487..8322702 | 246..462 | 99 | <- | Minus |
2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
2L | 8324959..8325013 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:13 Download gff for
BO13176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8322487..8322702 | 246..462 | 99 | <- | Minus |
arm_2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
arm_2L | 8324959..8325013 | 17..71 | 100 | | Minus |
BO13176.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-08
> BO13176.3prime
ATGGTCTAGAAAGCTTGCACGCTGCAGATACTGACGGGCGCTCAGCAGGA
GGCCCACCATGGCTGCCACGCCCAACGCCGATGCGCCCATCGCTCCGGCT
CCGTTGCAGTTATCCGTATCGCAGGAGCAGACCACCTGCCGACCACCAAA
ACCGGCACGCTGATAGCAATAGTTGGTGGAGGTCTGATTCTGATAGGCAC
AGGTCCTAATCACACGGCTATCCGGGGGCAGGCTGTTCACCGAGAACTCG
ATGATCTGCGTAATCTTGCGGCAGTATGTGGGTATTCCCTTGCCACGGGA
CGAGTACTGCTCATCGCAGTCCTTCAGCAGATTGTCCGGCGGTATGTCCA
GCGCACAGTTGGCGTCTTTGTGGCTGTTGCAGACAAAGCACTTGATGGCA
TATCCTTGCTGCACGGCGATGGCCAAAATCAGCGCACTAATCACATAGAT
GTACTGCATGTCGACTGATAACT
BO13176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-PA | 444 | CG7781-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 1981 | CG7781-RB | 397..837 | 459..19 | 2205 | 100 | Minus |
CG7781-RA | 1834 | CG7781-RA | 250..690 | 459..19 | 2205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8322491..8322702 | 19..230 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 8322774..8322949 | 231..406 | 880 | 100 | Plus |
2L | 23513712 | 2L | 8324958..8325013 | 404..459 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:18:42 has no hits.
BO13176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:04 Download gff for
BO13176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:25 Download gff for
BO13176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:02 Download gff for
BO13176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..694 | 14..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:33 Download gff for
BO13176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..694 | 14..459 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:33 Download gff for
BO13176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8322487..8322702 | 14..230 | 99 | <- | Plus |
2L | 8322774..8322947 | 231..404 | 100 | <- | Plus |
2L | 8324959..8325013 | 405..459 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:02 Download gff for
BO13176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8322487..8322702 | 14..230 | 99 | <- | Plus |
arm_2L | 8322774..8322947 | 231..404 | 100 | <- | Plus |
arm_2L | 8324959..8325013 | 405..459 | 100 | | Plus |
BO13176.complete Sequence
475 bp assembled on 2006-10-11
GenBank Submission: FJ632702
> BO13176.complete
GAAGTTATCAGTCGACATGCAGTACATCTATGTGATTAGTGCGCTGATTT
TGGCCATCGCCGTGCAGCAAGGATATGCCATCAAGTGCTTTGTCTGCAAC
AGCCACAAAGACGCCAACTGTGCGCTGGACATACCGCCGGACAATCTGCT
GAAGGACTGCGATGAGCAGTACTCGTCCCGTGGCAAGGGAATACCCACAT
ACTGCCGCAAGATTACGCAGATCATCGAGTTCTCGGTGAACAGCCTGCCC
CCGGATAGCCGTGTGATTAGGACCTGTGCCTATCAGAATCAGACCTCCAC
CAACTATTGCTATCAGCGTGCCGGTTTTGGTGGTCGGCAGGTGGTCTGCT
CCTGCGATACGGATAACTGCAACGGAGCCGGAGCGATGGGCGCATCGGCG
TTGGGCGTGGCAGCCATGGTGGGCCTCCTGCTGAGCGCCCGTCAGTATCT
GCAGCGTGCAAGCTTTCTAGACCAT
BO13176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 444 | CG7781-PB | 1..441 | 17..457 | 2205 | 100 | Plus |
CG7781-RA | 444 | CG7781-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-RB | 1981 | CG7781-RB | 397..837 | 17..457 | 2205 | 100 | Plus |
CG7781-RA | 1834 | CG7781-RA | 250..690 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8322491..8322702 | 457..246 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 8322774..8322949 | 245..70 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8324958..8325013 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:38:58 has no hits.
BO13176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:27 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:15 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 287..731 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:40 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..690 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:28 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 287..731 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:42 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7781-RA | 250..690 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:42 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8322489..8322702 | 246..459 | 99 | <- | Minus |
2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
2L | 8324959..8325013 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:40 Download gff for
BO13176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8324959..8325013 | 17..71 | 100 | | Minus |
arm_2L | 8322489..8322702 | 246..459 | 99 | <- | Minus |
arm_2L | 8322774..8322947 | 72..245 | 100 | <- | Minus |
BO13176.pep Sequence
Translation from 16 to 475
> BO13176.pep
MQYIYVISALILAIAVQQGYAIKCFVCNSHKDANCALDIPPDNLLKDCDE
QYSSRGKGIPTYCRKITQIIEFSVNSLPPDSRVIRTCAYQNQTSTNYCYQ
RAGFGGRQVVCSCDTDNCNGAGAMGASALGVAAMVGLLLSARQYLQRASF
LDH
BO13176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7781-PB | 147 | CG7781-PB | 1..147 | 1..147 | 779 | 100 | Plus |
CG7781-PA | 147 | CG7781-PA | 1..147 | 1..147 | 779 | 100 | Plus |
CG14275-PB | 148 | CG14275-PB | 6..148 | 3..153 | 150 | 29.9 | Plus |
CG14275-PA | 148 | CG14275-PA | 6..148 | 3..153 | 150 | 29.9 | Plus |
crok-PA | 151 | CG17218-PA | 7..142 | 5..140 | 146 | 32.7 | Plus |