Clone BO13177 Report

Search the DGRC for BO13177

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCSN6-RA
Protein status:BO13177.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO13177.3prime Sequence

689 bp (592 high quality bases) assembled on 2006-05-08

> BO13177.3prime
ATGGTCTAGAAAGCTTGCATAGTAGAGACCTCGCATGCGGCGCGCGGATC
CCTGGCGGTCGTACAGCATATTAAACTTGTTCACAAAGTGGTGCATATCA
TTGCAGCCCTTGGTCAGCGTGCCCAGGTAGCTAATCAGTCCCACATCGTT
GCACTGCGTGTAGAATTCCTCCTGGAAGGCGGGCACCTGCATGACGGGCA
GTCGGTGGCAGAGAGCGTAGGCTTCTCGCAGAATCTCTTGGTTGGCCCGC
AGCTTTCCGGCCTCCACATCGCGTATGTACTGCAGCACGATCTTGATGCG
TGTATTTAGCATCTTAATGGCACTGTCCTGGGCCACCAAATGCTCCGCCA
CCACGCTCTTCTCGCCGGACTCGTTCGAGGTCATGCGCGCCACATGATCC
ACACCAATGCGCTCCGCCTCCTCGGTGGCCAGTGTGTAGGTGAGGGGCAC
GAACAGCATGGTGGCCTCGCCGTCCACCAGATCGATTAGGGACTCGAATA
GCTTCAGGGGAAGGTGGTCGACGCTGCGGGAGAGCGGATTCAGCTGTAGC
ATGATGGGGCACTCGTTGATGGCGGCTATCTGTCTTTGGATCTTAATGTC
ATCGGCAGTGGGATTGTCGCCGGTTGTGTACCAGCCTATGAAGTCGAGAT
CACTGAACACCTGCTTGTACTGTTGTTCCTTCTTGTTGT

BO13177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6932-PA 1026 CSN6-RA 353..1023 689..19 3355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1203 CG6932-RA 475..1145 689..19 3355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22581331..22581975 663..19 3225 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:35:37 has no hits.

BO13177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:06 Download gff for BO13177.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-PA 353..1026 16..689 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:28 Download gff for BO13177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6932-PA 353..1026 16..689 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:35 Download gff for BO13177.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 475..1145 19..689 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:47:58 Download gff for BO13177.3prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 475..1145 19..689 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:47:58 Download gff for BO13177.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22581247..22581275 661..689 100 -> Minus
3R 22581334..22581975 19..660 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:35 Download gff for BO13177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406969..18406997 661..689 100 -> Minus
arm_3R 18407056..18407697 19..660 100   Minus

BO13177.5prime Sequence

682 bp (620 high quality bases) assembled on 2006-05-08

> BO13177.5prime
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCG

BO13177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6932-PA 1026 CSN6-RA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1203 CG6932-RA 122..788 16..682 3335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22580894..22581278 16..400 1925 100 Plus
3R 32079331 3R 22581331..22581618 395..682 1440 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:55:35 has no hits.

BO13177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:07 Download gff for BO13177.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:30 Download gff for BO13177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6932-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:07 Download gff for BO13177.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 122..788 16..682 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:29 Download gff for BO13177.5prime
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 122..788 16..682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:29 Download gff for BO13177.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22580894..22581275 16..397 100 -> Plus
3R 22581334..22581618 398..682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:07 Download gff for BO13177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406616..18406997 16..397 100 -> Plus
arm_3R 18407056..18407340 398..682 100   Plus

BO13177.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ632703

> BO13177.complete
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAAG
AGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGCT
AAATACACGCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCCG
GAAAGCTGCGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTGC
CACCGACTGCCCGTCATGCAGGTGCCCGCCTTCCAGGAGGAATTCTACAC
GCAGTGCAACGATGTGGGACTGATTAGCTACCTGGGCACGCTGACCAAGG
GCTGCAATGATATGCACCACTTTGTGAACAAGTTTAATATGCTGTACGAC
CGCCAGGGATCCGCGCGCCGCATGCGAGGTCTCTACTATGCAAGCTTTCT
AGACCAT

BO13177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1026 CG6932-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-RA 1203 CG6932-RA 122..1145 16..1039 5120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22581331..22581975 395..1039 3225 100 Plus
3R 32079331 3R 22580894..22581278 16..400 1925 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:01:12 has no hits.

BO13177.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:31 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:18 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 120..1143 16..1039 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:44 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 123..1145 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:31 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 120..1143 16..1039 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:54 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
CSN6-RA 123..1145 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:54 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22580895..22581275 17..397 100 -> Plus
3R 22581334..22581975 398..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:44 Download gff for BO13177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18406617..18406997 17..397 100 -> Plus
arm_3R 18407056..18407697 398..1041 99   Plus

BO13177.pep Sequence

Translation from 16 to 1057

> BO13177.pep
MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG
SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF
ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK
IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL
TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK
IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV
GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYYASFLDH

BO13177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CSN6-PA 341 CG6932-PA 1..341 1..341 1755 100 Plus
Rpn8-PC 338 CG3416-PC 11..280 54..321 223 23 Plus
Rpn8-PA 338 CG3416-PA 11..280 54..321 223 23 Plus
Rpn8-PB 358 CG3416-PB 11..280 54..321 223 23 Plus