Clone Sequence Records
BO13177.3prime Sequence
689 bp (592 high quality bases) assembled on 2006-05-08
> BO13177.3prime
ATGGTCTAGAAAGCTTGCATAGTAGAGACCTCGCATGCGGCGCGCGGATC
CCTGGCGGTCGTACAGCATATTAAACTTGTTCACAAAGTGGTGCATATCA
TTGCAGCCCTTGGTCAGCGTGCCCAGGTAGCTAATCAGTCCCACATCGTT
GCACTGCGTGTAGAATTCCTCCTGGAAGGCGGGCACCTGCATGACGGGCA
GTCGGTGGCAGAGAGCGTAGGCTTCTCGCAGAATCTCTTGGTTGGCCCGC
AGCTTTCCGGCCTCCACATCGCGTATGTACTGCAGCACGATCTTGATGCG
TGTATTTAGCATCTTAATGGCACTGTCCTGGGCCACCAAATGCTCCGCCA
CCACGCTCTTCTCGCCGGACTCGTTCGAGGTCATGCGCGCCACATGATCC
ACACCAATGCGCTCCGCCTCCTCGGTGGCCAGTGTGTAGGTGAGGGGCAC
GAACAGCATGGTGGCCTCGCCGTCCACCAGATCGATTAGGGACTCGAATA
GCTTCAGGGGAAGGTGGTCGACGCTGCGGGAGAGCGGATTCAGCTGTAGC
ATGATGGGGCACTCGTTGATGGCGGCTATCTGTCTTTGGATCTTAATGTC
ATCGGCAGTGGGATTGTCGCCGGTTGTGTACCAGCCTATGAAGTCGAGAT
CACTGAACACCTGCTTGTACTGTTGTTCCTTCTTGTTGT
BO13177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6932-PA | 1026 | CSN6-RA | 353..1023 | 689..19 | 3355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1203 | CG6932-RA | 475..1145 | 689..19 | 3355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22581331..22581975 | 663..19 | 3225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:35:37 has no hits.
BO13177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:06 Download gff for
BO13177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-PA | 353..1026 | 16..689 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:28 Download gff for
BO13177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6932-PA | 353..1026 | 16..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:35 Download gff for
BO13177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 475..1145 | 19..689 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:47:58 Download gff for
BO13177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 475..1145 | 19..689 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:47:58 Download gff for
BO13177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22581247..22581275 | 661..689 | 100 | -> | Minus |
3R | 22581334..22581975 | 19..660 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:35 Download gff for
BO13177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18406969..18406997 | 661..689 | 100 | -> | Minus |
arm_3R | 18407056..18407697 | 19..660 | 100 | | Minus |
BO13177.5prime Sequence
682 bp (620 high quality bases) assembled on 2006-05-08
> BO13177.5prime
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCG
BO13177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6932-PA | 1026 | CSN6-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1203 | CG6932-RA | 122..788 | 16..682 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22580894..22581278 | 16..400 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 22581331..22581618 | 395..682 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:55:35 has no hits.
BO13177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:07 Download gff for
BO13177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:30 Download gff for
BO13177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6932-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:07 Download gff for
BO13177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 122..788 | 16..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:29 Download gff for
BO13177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 122..788 | 16..682 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:29 Download gff for
BO13177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22580894..22581275 | 16..397 | 100 | -> | Plus |
3R | 22581334..22581618 | 398..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:07 Download gff for
BO13177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18406616..18406997 | 16..397 | 100 | -> | Plus |
arm_3R | 18407056..18407340 | 398..682 | 100 | | Plus |
BO13177.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ632703
> BO13177.complete
GAAGTTATCAGTCGACATGGAGCAAATGGAAGTGGACGTTGACATGTCGG
CCAAGCCCAGCACATCGTCCTCCGCCGCCGCCGGGAGCAGTATGGCAGTG
GATAAGACTGCGGATCAAAACCCACAGCCGCAGGGAAACATAATGGCTGC
AGCGGGCACCAGTGGTTCTGTGACCATATCGCTGCATCCGCTGGTCATAA
TGAACATCTCCGAGCACTGGACACGCTTTCGTGCACAGCACGGTGAGCCG
CGACAGGTGTACGGAGCACTGATTGGCAAGCAGAAGGGCCGCAACATTGA
GATTATGAACTCGTTCGAACTGAAGACGGACGTTATTGGCGATGAAACAG
TGATCAACAAGGACTACTACAACAAGAAGGAACAACAGTACAAGCAGGTG
TTCAGTGATCTCGACTTCATAGGCTGGTACACAACCGGCGACAATCCCAC
TGCCGATGACATTAAGATCCAAAGACAGATAGCCGCCATCAACGAGTGCC
CCATCATGCTACAGCTGAATCCGCTCTCCCGCAGCGTCGACCACCTTCCC
CTGAAGCTATTCGAGTCCCTAATCGATCTGGTGGACGGCGAGGCCACCAT
GCTGTTCGTGCCCCTCACCTACACACTGGCCACCGAGGAGGCGGAGCGCA
TTGGTGTGGATCATGTGGCGCGCATGACCTCGAACGAGTCCGGCGAGAAG
AGCGTGGTGGCGGAGCATTTGGTGGCCCAGGACAGTGCCATTAAGATGCT
AAATACACGCATCAAGATCGTGCTGCAGTACATACGCGATGTGGAGGCCG
GAAAGCTGCGGGCCAACCAAGAGATTCTGCGAGAAGCCTACGCTCTCTGC
CACCGACTGCCCGTCATGCAGGTGCCCGCCTTCCAGGAGGAATTCTACAC
GCAGTGCAACGATGTGGGACTGATTAGCTACCTGGGCACGCTGACCAAGG
GCTGCAATGATATGCACCACTTTGTGAACAAGTTTAATATGCTGTACGAC
CGCCAGGGATCCGCGCGCCGCATGCGAGGTCTCTACTATGCAAGCTTTCT
AGACCAT
BO13177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1026 | CG6932-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-RA | 1203 | CG6932-RA | 122..1145 | 16..1039 | 5120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22581331..22581975 | 395..1039 | 3225 | 100 | Plus |
3R | 32079331 | 3R | 22580894..22581278 | 16..400 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:12 has no hits.
BO13177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:31 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:18 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 120..1143 | 16..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:44 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 123..1145 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:31 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 120..1143 | 16..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:54 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CSN6-RA | 123..1145 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:54 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22580895..22581275 | 17..397 | 100 | -> | Plus |
3R | 22581334..22581975 | 398..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:44 Download gff for
BO13177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18406617..18406997 | 17..397 | 100 | -> | Plus |
arm_3R | 18407056..18407697 | 398..1041 | 99 | | Plus |
BO13177.pep Sequence
Translation from 16 to 1057
> BO13177.pep
MEQMEVDVDMSAKPSTSSSAAAGSSMAVDKTADQNPQPQGNIMAAAGTSG
SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSF
ELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK
IQRQIAAINECPIMLQLNPLSRSVDHLPLKLFESLIDLVDGEATMLFVPL
TYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIK
IVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDV
GLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLYYASFLDH
BO13177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CSN6-PA | 341 | CG6932-PA | 1..341 | 1..341 | 1755 | 100 | Plus |
Rpn8-PC | 338 | CG3416-PC | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PA | 338 | CG3416-PA | 11..280 | 54..321 | 223 | 23 | Plus |
Rpn8-PB | 358 | CG3416-PB | 11..280 | 54..321 | 223 | 23 | Plus |