Clone Sequence Records
BO13179.3prime Sequence
754 bp (622 high quality bases) assembled on 2006-05-08
> BO13179.3prime
ATGGTCTAGAAAGCTTGCAAAGCCTGGGGCATAGCCCTGCATGTTCATGC
GCTCCAGGAAACCGCCGGATGGTGGATACAATCCCTGCATGTTGACCTGA
GGTGCTGGATACAATCCTGGATTGGCTCCACCGAATCCCTGCGGAGCGGG
ATATAGACCCGGGCTAACGCCACCGAATCCTTGAGGTGCTGGATATATTC
CGGAACTGCCGCCAGCCAATCCCTGAACATTGGCCATATTGACAATATTG
TTCAGCGATTGAAAGTTATCTACGGCTGGATTGGGCACAAATCCATTAGG
CAGCTGGGGGTTGGGATACATCAGGGAGTTTCCATACATGGGTGCCACGC
CTGGGTAGCCGAATGAGCCAAAGGGATTGAAGCCAGGAACTGAACCAGTC
AGATTGGGATCCGGATACGAGGGATAGTTGTTGGCAATGTTCGTCTGCAG
ACCGGGAACACCATTTAGGCCAGGTGCCGGCGCAAGGCCAGGATAGATCA
GACCCGGGTAGTTGGGATACCGCACCAACTGGCCACCGACCGAGCTCAGG
GCCATCTGGTTCATTGGCACACCCATGGTCATCGACATTGGTTGAGATCC
CGTCGCTGGAGTCACGTTGGCCACCATTTTAACGTCTGGATCCGCAGAAC
CGGCCATCTTCAACTGACGCTCCTTTCGCACATGCTGATCATCGATATGC
TGCTGTTCCGCATCCAGTGGCTTTGACTCCGCCGTGCCCAAAAGGAGCAG
GGAG
BO13179.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-PA | 777 | CG13216-RA | 39..774 | 754..19 | 3605 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 888 | CG13216-RA | 71..806 | 754..19 | 3635 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11238190..11238925 | 19..754 | 3635 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:46:03 has no hits.
BO13179.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:10 Download gff for
BO13179.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-PA | 39..777 | 15..754 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:35 Download gff for
BO13179.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-PA | 39..777 | 15..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:07:12 Download gff for
BO13179.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 71..811 | 11..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:12 Download gff for
BO13179.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 71..811 | 11..754 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:12 Download gff for
BO13179.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11238185..11238925 | 11..754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:07:12 Download gff for
BO13179.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7125690..7126430 | 11..754 | 99 | | Plus |
BO13179.5prime Sequence
680 bp (629 high quality bases) assembled on 2006-05-08
> BO13179.5prime
GAAGTTATCAGTCGACATGACCAAGTTCGTTGCGAAGAAAGCTATCCTGC
TGCTCTCCCTGCTCCTTCTGGGCACGGCGGAGTCAAAGCCACTGGATGCG
GAACAGCAGCATATCGATGATCAGCATGTGCGAAAGGAGCGTCAGCTGAA
GATGGCCGGTTCTGCGGATCCAGACGTTAAAATGGTGGCCAACGTGACTC
CAGCGACGGGATCTCAACCAATGTCGATGACCATGGGTGTGCCAATGAAC
CAGATGGCCCTGAGCTCGGTCGGTGGCCAGTTGGTGCGGTATCCCAACTA
CCCGGGTCTGATCTATCCTGGCCTTGCGCCGGCACCTGGCCTAAATGGTG
TTCCCGGTCTGCAGACGAACATTGCCAACAACTATCCCTCGTATCCGGAT
CCCAATCTGACTGGTTCAGTTCCTGGCTTCAATCCCTTTGGCTCATTCGG
CTACCCAGGCGTGGCACCCATGTATGGAAACTCCCTGATGTATCCCAACC
CCCAGCTGCCTAATGGATTTGTGCCCAATCCAGCCGTAGATAACTTTCAA
TCGCTGAACAATATTGTCAATATGGCCAATGTTCAGGGATTGGCTGGCGG
CAGTTCCGGAATATATCCAGCACCTCAAGGATTCGGTGGCGTTAGCCCGG
GTCTATATCCCGCTCCGCAGGGATTCGGTG
BO13179.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-PA | 777 | CG13216-RA | 1..664 | 17..680 | 3295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 888 | CG13216-RA | 29..696 | 13..680 | 3310 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11238300..11238967 | 680..13 | 3310 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:02:28 has no hits.
BO13179.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:11 Download gff for
BO13179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-PA | 1..664 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:36 Download gff for
BO13179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-PA | 1..664 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:01 Download gff for
BO13179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 29..696 | 13..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:21 Download gff for
BO13179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 29..696 | 13..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:21 Download gff for
BO13179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11238300..11238967 | 13..680 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:01 Download gff for
BO13179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7125805..7126472 | 13..680 | 99 | | Minus |
BO13179.complete Sequence
808 bp assembled on 2006-10-11
GenBank Submission: FJ632704
> BO13179.complete
GAAGTTATCAGTCGACATGACCAAGTTCGTTGCGAAGAAAGCTATCCTGC
TGCTCTCCCTGCTCCTTCTGGGCACGGCGGAGTCAAAGCCACTGGATGCG
GAACAGCAGCATATCGATGATCAGCATGTGCGAAAGGAGCGTCAGCTGAA
GATGGCCGGTTCTGCGGATCCAGACGTTAAAATGGTGGCCAACGTGACTC
CAGCGACGGGATCTCAACCAATGTCGATGACCATGGGTGTGCCAATGAAC
CAGATGGCCCTGAGCTCGGTCGGTGGCCAGTTGGTGCGGTATCCCAACTA
CCCGGGTCTGATCTATCCTGGCCTTGCGCCGGCACCTGGCCTAAATGGTG
TTCCCGGTCTGCAGACGAACATTGCCAACAACTATCCCTCGTATCCGGAT
CCCAATCTGACTGGTTCAGTTCCTGGCTTCAATCCCTTTGGCTCATTCGG
CTACCCAGGCGTGGCACCCATGTATGGAAACTCCCTGATGTATCCCAACC
CCCAGCTGCCTAATGGATTTGTGCCCAATCCAGCCGTAGATAACTTTCAA
TCGCTGAACAATATTGTCAATATGGCCAATGTTCAGGGATTGGCTGGCGG
CAGTTCCGGAATATATCCAGCACCTCAAGGATTCGGTGGCGTTAGCCCGG
GTCTATATCCCGCTCCGCAGGGATTCGGTGGAGCCAATCCAGGATTGTAT
CCAGCACCTCAGGTCAACATGCAGGGATTGTATCCACCATCCGGCGGTTT
CCTGGAGCGCATGAACATGCAGGGCTATGCCCCAGGCTTTGCAAGCTTTC
TAGACCAT
BO13179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 777 | CG13216-PA | 1..774 | 17..790 | 3855 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-RA | 888 | CG13216-RA | 29..806 | 13..790 | 3860 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11238190..11238967 | 790..13 | 3860 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:30 has no hits.
BO13179.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:32 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:19 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 28..810 | 13..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:39 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 33..806 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:32 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 28..810 | 13..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:39 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13216-RA | 33..806 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:39 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11238188..11238963 | 17..792 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:39 Download gff for
BO13179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7125693..7126468 | 17..792 | 99 | | Minus |
BO13179.pep Sequence
Translation from 16 to 808
> BO13179.pep
MTKFVAKKAILLLSLLLLGTAESKPLDAEQQHIDDQHVRKERQLKMAGSA
DPDVKMVANVTPATGSQPMSMTMGVPMNQMALSSVGGQLVRYPNYPGLIY
PGLAPAPGLNGVPGLQTNIANNYPSYPDPNLTGSVPGFNPFGSFGYPGVA
PMYGNSLMYPNPQLPNGFVPNPAVDNFQSLNNIVNMANVQGLAGGSSGIY
PAPQGFGGVSPGLYPAPQGFGGANPGLYPAPQVNMQGLYPPSGGFLERMN
MQGYAPGFASFLDH
BO13179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13216-PA | 258 | CG13216-PA | 1..258 | 1..258 | 1379 | 100 | Plus |
