Clone Sequence Records
BO13180.3prime Sequence
560 bp (549 high quality bases) assembled on 2006-05-08
> BO13180.3prime
ATGGTCTAGAAAGCTTGCGGCAGTCTTGGTCTCAACCTTCTTCTCGGTCT
CGGCCTCGATGGCGGTCTTGACCTCGGCTTGGGGCGCGGCATCGAGGACC
ACCTGGACAGGCGCCACCTGGGACTCGGCGGGCAGGGGCTCGGATTTCTC
CACCACAACCGATTCCTTGGCAACCACAGGCTCCTCCTTCTCCACTGGGG
CGGCTTCCTTCTCTACAGCAACTTCCTTATTGTCCAGTTCCTGGGAGCGG
GCCTTGCGATACTTCTGCTCATCCTCGGAAACCTTGGGCAGAAGGGCAGC
TGACTTGGCCAACTCGGTGATCTCCTTGGGAATGATGGTGCCAATGGGCA
CGAATCCGTTCTTTCCGGCGGTGTAGTGCACCTCCACGGTGTTGCCATCG
GCGTCGATGTAGCTGTACATACCGGACACCTCCAAGGCCTCGTCCTCGGT
GCCGGCGTTCTCGATCACTCCCTGCTCCTGGCGCACGGACTGGTCACCGC
CCTCGTAGCTGAAGTGGAAGGAGCCATCGGGGTTCTTGTTCGTCTCAAAC
CTCAGCAGAG
BO13180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13224-PA | 645 | CG13224-RA | 101..642 | 560..19 | 2710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 817 | CG13224-RA | 179..720 | 560..19 | 2710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11255345..11255886 | 560..19 | 2710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:32:34 has no hits.
BO13180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:11 Download gff for
BO13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13224-PA | 101..645 | 15..560 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:37 Download gff for
BO13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13224-PA | 101..645 | 15..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:14 Download gff for
BO13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 179..734 | 5..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:31 Download gff for
BO13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 179..734 | 5..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:31 Download gff for
BO13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11255345..11255900 | 5..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:14 Download gff for
BO13180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7142850..7143405 | 5..560 | 99 | | Minus |
BO13180.5prime Sequence
673 bp (587 high quality bases) assembled on 2006-05-08
> BO13180.5prime
GAAGTTATCAGTCGACATGTTCAAGATCGCCATCTGCTTGTTGGCCCTGG
TCGGCGGATCTCTGGCTGCCAGCATTGGCCAGGTTGACAGCACCACCGAG
AAGCGTGAGATTGTGCCTCTGCTGAGGTTTGAGACGAACAAGAACCCCGA
TGGCTCCTTCCACTTCAGCTACGAGGGCGGTGACCAGTCCGTGCGCCAGG
AGCAGGGAGTGATCGAGAACGCCGGCACCGAGGACGAGGCCTTGGAGGTG
TCCGGTATGTACAGCTACATCGACGCCGATGGCAACACCGTGGAGGTGCA
CTACACCGCCGGAAAGAACGGATTCGTGCCCATTGGCACCATCATTCCCA
AGGAGATCACCGAGTTGGCCAAGTCAGCTGCCCTTCTGCCCAAGGTTTCC
GAGGATGAGCAGAAGTATCGCAAGGCCCGCTCCCAGGAACTGGACAATAA
GGAAGTTGCTGTAGAGAAGGAAGCCGCCCCAGTGGAGAAGGAGGAGCCTG
TGGTTGCCAAGGAATCGGTTGTGGTGGAGAAATCCGAGCCCCTGCCCGCC
GAGTCCCAGGTGGCGCCTGTCCAGGTGGTCCTCGATGCCGCGCCCAAGCC
GAGGTCAAAACCGCCATCGAGGCCAAGACCGAGAAGAAAGTTGAGACCAA
GACTGCCGCAAGCTTTCTAGACC
BO13180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13224-PA | 645 | CG13224-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
| CG13224-PA | 645 | CG13224-RA | 578..642 | 593..657 | 250 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 817 | CG13224-RA | 75..720 | 13..657 | 3145 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11255241..11255886 | 13..657 | 3120 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:35:22 has no hits.
BO13180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:12 Download gff for
BO13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13224-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:39 Download gff for
BO13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13224-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:59:32 Download gff for
BO13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 72..736 | 9..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:08 Download gff for
BO13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 72..736 | 9..673 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:08 Download gff for
BO13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11255238..11255902 | 9..673 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:59:32 Download gff for
BO13180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7142743..7143407 | 9..673 | 98 | | Plus |
BO13180.complete Sequence
676 bp assembled on 2006-10-11
GenBank Submission: FJ632705
> BO13180.complete
GAAGTTATCAGTCGACATGTTCAAGATCGCCATCTGCTTGTTGGCCCTGG
TCGGCGGATCTCTGGCTGCCAGCATTGGCCAGGTTGACAGCACCACCGAG
AAGCGTGAGATTGTGCCTCTGCTGAGGTTTGAGACGAACAAGAACCCCGA
TGGCTCCTTCCACTTCAGCTACGAGGGCGGTGACCAGTCCGTGCGCCAGG
AGCAGGGAGTGATCGAGAACGCCGGCACCGAGGACGAGGCCTTGGAGGTG
TCCGGTATGTACAGCTACATCGACGCCGATGGCAACACCGTGGAGGTGCA
CTACACCGCCGGAAAGAACGGATTCGTGCCCATTGGCACCATCATTCCCA
AGGAGATCACCGAGTTGGCCAAGTCAGCTGCCCTTCTGCCCAAGGTTTCC
GAGGATGAGCAGAAGTATCGCAAGGCCCGCTCCCAGGAACTGGACAATAA
GGAAGTTGCTGTAGAGAAGGAAGCCGCCCCAGTGGAGAAGGAGGAGCCTG
TGGTTGCCAAGGAATCGGTTGTGGTGGAGAAATCCGAGCCCCTGCCCGCC
GAGTCCCAGGTGGCGCCTGTCCAGGTGGTCCTCGATGCCGCGCCCCAAGC
CGAGGTCAAGACCGCCATCGAGGCCGAGACCGAGAAGAAGGTTGAGACCA
AGACTGCCGCAAGCTTTCTAGACCAT
BO13180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 645 | CG13224-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-RA | 817 | CG13224-RA | 75..720 | 13..658 | 3215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11255241..11255886 | 13..658 | 3215 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:48:12 has no hits.
BO13180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:33 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:21 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 70..732 | 9..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:00 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 84..720 | 22..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:33 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 70..732 | 9..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:31 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Eb-RA | 84..720 | 22..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:31 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11255250..11255886 | 22..660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:00 Download gff for
BO13180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7142755..7143391 | 22..660 | 99 | | Plus |
BO13180.pep Sequence
Translation from 16 to 676
> BO13180.pep
MFKIAICLLALVGGSLAASIGQVDSTTEKREIVPLLRFETNKNPDGSFHF
SYEGGDQSVRQEQGVIENAGTEDEALEVSGMYSYIDADGNTVEVHYTAGK
NGFVPIGTIIPKEITELAKSAALLPKVSEDEQKYRKARSQELDNKEVAVE
KEAAPVEKEEPVVAKESVVVEKSEPLPAESQVAPVQVVLDAAPQAEVKTA
IEAETEKKVETKTAASFLDH
BO13180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Eb-PA | 214 | CG13224-PA | 1..214 | 1..214 | 1059 | 100 | Plus |
| Cpr47Ec-PA | 131 | CG9077-PA | 4..130 | 8..135 | 240 | 43.8 | Plus |
| Cpr78E-PA | 137 | CG7160-PA | 1..133 | 1..136 | 227 | 42.3 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 134..212 | 33..111 | 194 | 44.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 134..212 | 33..111 | 194 | 44.3 | Plus |
