Clone Sequence Records
BO13182.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-05-08
> BO13182.3prime
ATGGTCTAGAAAGCTTGCAATGGACGAGGTGGCATAGTCGGCCGGGAACT
TGAACAGGTGCTTTCCAGTGGCCTGAACGGAGGGAAGGAGTCCCGCGTTC
GGAATGATGTTCCACGAGAGGTATAGCGATACGTTGCGGTTGTCCTTCAG
GCCATTCCCGTCGTCCCAGAAGTAGTACTTGGTGTTCATGTTCTTGAAGT
CCAATACGGCATTGTCGCCGCGCAGGATAATCTTGTCCCACAGTACCACC
TGGTTGAGTTGATTGGCCGGTGTCTGGTACTCGGCGGTGAGATACAGGAA
CAGCTGCTTCACGTTCCAGTTGAAGATGCCTGTGAGATTCGTTTGCAGAT
CGAAGGTCACGAAGCCCAAGTCGTGCTTCTCCCGGGACGCTCCGTAATCC
GGGACATTCTTCACCAGCACTCTGACCGTGTTGATGTTTGCATCGGTACG
GTAGTCAAGAAAGACGGTGGACAGGAAGCAGCTGAAGGTGAGGCAAGCTA
GAACGCTCAGCGTGTATGCCACCGTGGCGTTTCCTCGGGTTAACACCGTG
TGCATGTCGACTGATAACT
BO13182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5677-PA | 540 | CG5677-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 1694 | CG5677-RB | 79..615 | 555..19 | 2685 | 100 | Minus |
| Spase22-23-RA | 730 | CG5677-RA | 79..615 | 555..19 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24229421..24229957 | 19..555 | 2685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:15 has no hits.
BO13182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:15 Download gff for
BO13182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5677-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:44 Download gff for
BO13182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5677-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:56 Download gff for
BO13182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..623 | 11..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:45 Download gff for
BO13182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..623 | 11..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:45 Download gff for
BO13182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24229413..24229957 | 11..555 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:56 Download gff for
BO13182.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20055135..20055679 | 11..555 | 99 | | Plus |
BO13182.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-05-08
> BO13182.5prime
GAAGTTATCAGTCGACATGCACACGGTGTTAACCCGAGGAAACGCCACGG
TGGCATACACGCTGAGCGTTCTAGCTTGCCTCACCTTCAGCTGCTTCCTG
TCCACCGTCTTTCTTGACTACCGTACCGATGCAAACATCAACACGGTCAG
AGTGCTGGTGAAGAATGTCCCGGATTACGGAGCGTCCCGGGAGAAGCACG
ACTTGGGCTTCGTGACCTTCGATCTGCAAACGAATCTCACAGGCATCTTC
AACTGGAACGTGAAGCAGCTGTTCCTGTATCTCACCGCCGAGTACCAGAC
ACCGGCCAATCAACTCAACCAGGTGGTACTGTGGGACAAGATTATCCTGC
GCGGCGACAATGCCGTATTGGACTTCAAGAACATGAACACCAAGTACTAC
TTCTGGGACGACGGGAATGGCCTGAAGGACAACCGCAACGTATCGCTATA
CCTCTCGTGGAACATCATTCCGAACGCGGGACTCCTTCCCTCCGTTCAGG
CCACTGGAAAGCACCTGTTCAAGTTCCCGGCCGACTATGCCACCTCGTCC
ATTGCAAGCTTTCTAGACC
BO13182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5677-PA | 540 | CG5677-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 1694 | CG5677-RB | 79..615 | 17..553 | 2685 | 100 | Plus |
| Spase22-23-RA | 730 | CG5677-RA | 79..615 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24229421..24229957 | 553..17 | 2685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:36:18 has no hits.
BO13182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:16 Download gff for
BO13182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5677-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:45 Download gff for
BO13182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5677-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:19 Download gff for
BO13182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..623 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:24 Download gff for
BO13182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..623 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:24 Download gff for
BO13182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24229413..24229957 | 17..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:19 Download gff for
BO13182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20055135..20055679 | 17..561 | 99 | | Minus |
BO13182.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ632706
> BO13182.complete
GAAGTTATCAGTCGACATGCACACGGTGTTAACCCGAGGAAACGCCACGG
TGGCATACACGCTGAGCGTTCTAGCTTGCCTCACCTTCAGCTGCTTCCTG
TCCACCGTCTTTCTTGACTACCGTACCGATGCAAACATCAACACGGTCAG
AGTGCTGGTGAAGAATGTCCCGGATTACGGAGCGTCCCGGGAGAAGCACG
ACTTGGGCTTCGTGACCTTCGATCTGCAAACGAATCTCACAGGCATCTTC
AACTGGAACGTGAAGCAGCTGTTCCTGTATCTCACCGCCGAGTACCAGAC
ACCGGCCAATCAACTCAACCAGGTGGTACTGTGGGACAAGATTATCCTGC
GCGGCGACAATGCCGTATTGGACTTCAAGAACATGAACACCAAGTACTAC
TTCTGGGACGACGGGAATGGCCTGAAGGACAACCGCAACGTATCGCTATA
CCTCTCGTGGAACATCATTCCGAACGCGGGACTCCTTCCCTCCGTTCAGG
CCACTGGAAAGCACCTGTTCAAGTTCCCGGCCGACTATGCCACCTCGTCC
ATTGCAAGCTTTCTAGACCAT
BO13182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 540 | CG5677-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
| Spase22-23-RA | 540 | CG5677-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-RB | 1694 | CG5677-RB | 79..615 | 17..553 | 2685 | 100 | Plus |
| Spase22-23-RA | 730 | CG5677-RA | 79..615 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24229421..24229957 | 553..17 | 2685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:10:01 has no hits.
BO13182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:34 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:23 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 73..617 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:58 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..615 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:34 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 73..617 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:09 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spase22-23-RA | 79..615 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:09 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24229419..24229957 | 17..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:58 Download gff for
BO13182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20055141..20055679 | 17..555 | 99 | | Minus |
BO13182.pep Sequence
Translation from 16 to 571
> BO13182.pep
MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKN
VPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQL
NQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI
IPNAGLLPSVQATGKHLFKFPADYATSSIASFLDH
BO13182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spase22-23-PB | 179 | CG5677-PB | 1..179 | 1..179 | 947 | 100 | Plus |
| Spase22-23-PA | 179 | CG5677-PA | 1..179 | 1..179 | 947 | 100 | Plus |
