Clone Sequence Records
BO13183.3prime Sequence
623 bp (622 high quality bases) assembled on 2006-05-08
> BO13183.3prime
ATGGTCTAGAAAGCTTGCGTGGGATGGTGCCCCATACGAGCTGCTGGGAG
CAGAGGGTGCGGGCGGGGCAGCTGGAGCTCCGTACTCGGGCGCTGGAGGC
GCCACACTGTTGGGATAGGGTCCGGTCTCCTCCTTCTGGGTCTTGTAGCG
GATGAAGTACACCTCCGGCTTGCTGGGTTGGGTGGGAGCTGGCGTTGGGA
TAATGATCTCCGGCTGCTCCTCCGGCTTCTTGACTAGCACGTACACCAGG
GTCTTCTCTTCGTTCTGTGGGAACTGCGGTATTACAGGGGCGGTCGGTAC
TGGTGGAGATGGCGCCTTGATGAAGACGATCTTGTAGTGCTTCTGCGGAG
GTGGCACGTAAAGGGGTTTCCTGGGTGCCTGGTATTCCGGCTCTGGTGGA
GGTACATGGACGTAGACGTGCTTGTGAATCACCGGCGCCTGCTGGGGAGG
TCCGTACTGGGGCGCAGGGGCGCCGTAGCCTCCGCTGGGTCCACTTGGCT
GGTAGCTGCTGGAGGGGGGCGCACTGTACGAGTCACGAGGCGGCTCTGGA
CGAGCGGCCACCAGGGCAGCCAGGGCCATGAGGACCACTAACACACAACT
GGAATGCATGTCGACTGATAACT
BO13183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14534-PA | 594 | CG14534-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
CG5812-PA | 861 | GCR(ich)-RA | 475..519 | 345..301 | 150 | 93.3 | Minus |
CG14254-PA | 1083 | CG14254-RA | 471..510 | 346..307 | 150 | 95 | Minus |
CG8986-PA | 597 | CG8986-RA | 293..326 | 344..311 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 1346 | CG14534-RA | 140..730 | 609..19 | 2955 | 100 | Minus |
lectin-28C-RC | 3044 | CG7106-RC | 1497..1853 | 19..375 | 1785 | 100 | Plus |
TwdlT-RA | 1607 | CG5812-RA | 665..879 | 345..131 | 410 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7858573..7858929 | 19..375 | 1785 | 100 | Plus |
2L | 23513712 | 2L | 7860380..7860602 | 370..592 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 27050062..27050276 | 345..131 | 370 | 78.1 | Minus |
2R | 25286936 | 2R | 11862730..11862834 | 151..255 | 180 | 78.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:37:55 has no hits.
BO13183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:17 Download gff for
BO13183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14534-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:47 Download gff for
BO13183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14534-PA | 1..594 | 18..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:01 Download gff for
BO13183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..735 | 13..617 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:12 Download gff for
BO13183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..735 | 13..617 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:12 Download gff for
BO13183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7858568..7858924 | 13..370 | 99 | <- | Plus |
2L | 7860381..7860601 | 371..591 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:01 Download gff for
BO13183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7860381..7860601 | 371..591 | 100 | <- | Plus |
arm_2L | 7858568..7858924 | 13..370 | 99 | <- | Plus |
BO13183.5prime Sequence
624 bp (623 high quality bases) assembled on 2006-05-08
> BO13183.5prime
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCCACGCAAGCTTTCTAGACC
BO13183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14534-PA | 594 | CG14534-RA | 1..589 | 17..605 | 2945 | 100 | Plus |
CG5812-PA | 861 | GCR(ich)-RA | 475..519 | 281..325 | 150 | 93.3 | Plus |
CG14254-PA | 1083 | CG14254-RA | 471..510 | 280..319 | 150 | 95 | Plus |
CG8986-PA | 597 | CG8986-RA | 293..326 | 282..315 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 1346 | CG14534-RA | 140..728 | 17..605 | 2945 | 100 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1499..1853 | 605..251 | 1775 | 100 | Minus |
TwdlT-RA | 1607 | CG5812-RA | 665..879 | 281..495 | 410 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7858575..7858929 | 605..251 | 1775 | 100 | Minus |
2L | 23513712 | 2L | 7860380..7860602 | 256..34 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 27050062..27050276 | 281..495 | 370 | 78.1 | Plus |
2R | 25286936 | 2R | 11862730..11862834 | 475..371 | 180 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:24:25 has no hits.
BO13183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:18 Download gff for
BO13183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14534-PA | 1..594 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:48 Download gff for
BO13183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14534-PA | 1..594 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:54 Download gff for
BO13183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..735 | 9..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:42 Download gff for
BO13183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 131..735 | 9..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:42 Download gff for
BO13183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7858568..7858924 | 256..614 | 98 | <- | Minus |
2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:54 Download gff for
BO13183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7858568..7858924 | 256..614 | 98 | <- | Minus |
arm_2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
BO13183.complete Sequence
625 bp assembled on 2006-10-11
GenBank Submission: FJ632707
> BO13183.complete
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCACGCAAGCTTTCTAGACCAT
BO13183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 594 | CG14534-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
TwdlT-RA | 861 | CG5812-PA | 475..689 | 281..495 | 370 | 78.1 | Plus |
TwdlBeta-RA | 597 | CG8986-PA | 382..486 | 371..475 | 180 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-RA | 1346 | CG14534-RA | 140..730 | 17..607 | 2955 | 100 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1497..1853 | 607..251 | 1785 | 100 | Minus |
TwdlT-RA | 1607 | CG5812-RA | 665..879 | 281..495 | 370 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7858573..7858929 | 607..251 | 1785 | 100 | Minus |
2L | 23513712 | 2L | 7860380..7860602 | 256..34 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 27050062..27050276 | 281..495 | 370 | 78.1 | Plus |
2R | 25286936 | 2R | 11862730..11862834 | 475..371 | 180 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:05:08 has no hits.
BO13183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:35 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 1..594 | 17..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:24 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 130..734 | 9..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:33 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 140..730 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:35 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 130..734 | 9..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:10 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlE-RA | 140..730 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:10 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7858571..7858924 | 256..609 | 99 | <- | Minus |
2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
2L | 7860683..7860700 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:33 Download gff for
BO13183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7858571..7858924 | 256..609 | 99 | <- | Minus |
arm_2L | 7860381..7860601 | 35..255 | 100 | <- | Minus |
arm_2L | 7860683..7860700 | 17..34 | 100 | | Minus |
BO13183.pep Sequence
Translation from 16 to 625
> BO13183.pep
MHSSCVLVVLMALAALVAARPEPPRDSYSAPPSSSYQPSGPSGGYGAPAP
QYGPPQQAPVIHKHVYVHVPPPEPEYQAPRKPLYVPPPQKHYKIVFIKAP
SPPVPTAPVIPQFPQNEEKTLVYVLVKKPEEQPEIIIPTPAPTQPSKPEV
YFIRYKTQKEETGPYPNSVAPPAPEYGAPAAPPAPSAPSSSYGAPSHASF
LDH
BO13183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlE-PA | 197 | CG14534-PA | 1..197 | 1..197 | 1071 | 100 | Plus |
TwdlBeta-PA | 198 | CG8986-PA | 1..189 | 1..195 | 501 | 50.5 | Plus |
TwdlT-PA | 286 | CG5812-PA | 113..233 | 40..163 | 403 | 63.7 | Plus |
TwdlC-PA | 360 | CG14254-PA | 95..292 | 24..200 | 373 | 43.8 | Plus |
TwdlG-PC | 278 | CG14643-PC | 82..214 | 33..160 | 280 | 48.5 | Plus |