Clone BO13183 Report

Search the DGRC for BO13183

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlE-RA
Protein status:BO13183.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO13183.3prime Sequence

623 bp (622 high quality bases) assembled on 2006-05-08

> BO13183.3prime
ATGGTCTAGAAAGCTTGCGTGGGATGGTGCCCCATACGAGCTGCTGGGAG
CAGAGGGTGCGGGCGGGGCAGCTGGAGCTCCGTACTCGGGCGCTGGAGGC
GCCACACTGTTGGGATAGGGTCCGGTCTCCTCCTTCTGGGTCTTGTAGCG
GATGAAGTACACCTCCGGCTTGCTGGGTTGGGTGGGAGCTGGCGTTGGGA
TAATGATCTCCGGCTGCTCCTCCGGCTTCTTGACTAGCACGTACACCAGG
GTCTTCTCTTCGTTCTGTGGGAACTGCGGTATTACAGGGGCGGTCGGTAC
TGGTGGAGATGGCGCCTTGATGAAGACGATCTTGTAGTGCTTCTGCGGAG
GTGGCACGTAAAGGGGTTTCCTGGGTGCCTGGTATTCCGGCTCTGGTGGA
GGTACATGGACGTAGACGTGCTTGTGAATCACCGGCGCCTGCTGGGGAGG
TCCGTACTGGGGCGCAGGGGCGCCGTAGCCTCCGCTGGGTCCACTTGGCT
GGTAGCTGCTGGAGGGGGGCGCACTGTACGAGTCACGAGGCGGCTCTGGA
CGAGCGGCCACCAGGGCAGCCAGGGCCATGAGGACCACTAACACACAACT
GGAATGCATGTCGACTGATAACT

BO13183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14534-PA 594 CG14534-RA 1..591 609..19 2955 100 Minus
CG5812-PA 861 GCR(ich)-RA 475..519 345..301 150 93.3 Minus
CG14254-PA 1083 CG14254-RA 471..510 346..307 150 95 Minus
CG8986-PA 597 CG8986-RA 293..326 344..311 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1346 CG14534-RA 140..730 609..19 2955 100 Minus
lectin-28C-RC 3044 CG7106-RC 1497..1853 19..375 1785 100 Plus
TwdlT-RA 1607 CG5812-RA 665..879 345..131 410 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7858573..7858929 19..375 1785 100 Plus
2L 23513712 2L 7860380..7860602 370..592 1115 100 Plus
3R 32079331 3R 27050062..27050276 345..131 370 78.1 Minus
2R 25286936 2R 11862730..11862834 151..255 180 78.1 Plus
Blast to na_te.dros performed on 2015-02-10 18:37:55 has no hits.

BO13183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:17 Download gff for BO13183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14534-PA 1..594 18..609 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:47 Download gff for BO13183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14534-PA 1..594 18..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:01 Download gff for BO13183.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..735 13..617 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:12 Download gff for BO13183.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..735 13..617 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:12 Download gff for BO13183.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7858568..7858924 13..370 99 <- Plus
2L 7860381..7860601 371..591 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:01 Download gff for BO13183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7860381..7860601 371..591 100 <- Plus
arm_2L 7858568..7858924 13..370 99 <- Plus

BO13183.5prime Sequence

624 bp (623 high quality bases) assembled on 2006-05-08

> BO13183.5prime
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCCACGCAAGCTTTCTAGACC

BO13183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14534-PA 594 CG14534-RA 1..589 17..605 2945 100 Plus
CG5812-PA 861 GCR(ich)-RA 475..519 281..325 150 93.3 Plus
CG14254-PA 1083 CG14254-RA 471..510 280..319 150 95 Plus
CG8986-PA 597 CG8986-RA 293..326 282..315 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1346 CG14534-RA 140..728 17..605 2945 100 Plus
lectin-28C-RC 3044 CG7106-RC 1499..1853 605..251 1775 100 Minus
TwdlT-RA 1607 CG5812-RA 665..879 281..495 410 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7858575..7858929 605..251 1775 100 Minus
2L 23513712 2L 7860380..7860602 256..34 1115 100 Minus
3R 32079331 3R 27050062..27050276 281..495 370 78.1 Plus
2R 25286936 2R 11862730..11862834 475..371 180 78.1 Minus
Blast to na_te.dros performed on 2015-02-12 06:24:25 has no hits.

BO13183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:18 Download gff for BO13183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14534-PA 1..594 17..609 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:48 Download gff for BO13183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14534-PA 1..594 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:54 Download gff for BO13183.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..735 9..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:00:42 Download gff for BO13183.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 131..735 9..614 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:00:42 Download gff for BO13183.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7858568..7858924 256..614 98 <- Minus
2L 7860381..7860601 35..255 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:54 Download gff for BO13183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7858568..7858924 256..614 98 <- Minus
arm_2L 7860381..7860601 35..255 100 <- Minus

BO13183.complete Sequence

625 bp assembled on 2006-10-11

GenBank Submission: FJ632707

> BO13183.complete
GAAGTTATCAGTCGACATGCATTCCAGTTGTGTGTTAGTGGTCCTCATGG
CCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCGCCTCGTGACTCGTAC
AGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGGACCCAGCGGAGGCTA
CGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGCAGGCGCCGGTGATTC
ACAAGCACGTCTACGTCCATGTACCTCCACCAGAGCCGGAATACCAGGCA
CCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAAGCACTACAAGATCGT
CTTCATCAAGGCGCCATCTCCACCAGTACCGACCGCCCCTGTAATACCGC
AGTTCCCACAGAACGAAGAGAAGACCCTGGTGTACGTGCTAGTCAAGAAG
CCGGAGGAGCAGCCGGAGATCATTATCCCAACGCCAGCTCCCACCCAACC
CAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGACCCAGAAGGAGGAGA
CCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCGCCCGAGTACGGAGCT
CCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAGCTCGTATGGGGCACC
ATCCCACGCAAGCTTTCTAGACCAT

BO13183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 594 CG14534-PA 1..591 17..607 2955 100 Plus
TwdlT-RA 861 CG5812-PA 475..689 281..495 370 78.1 Plus
TwdlBeta-RA 597 CG8986-PA 382..486 371..475 180 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-RA 1346 CG14534-RA 140..730 17..607 2955 100 Plus
lectin-28C-RC 3044 CG7106-RC 1497..1853 607..251 1785 100 Minus
TwdlT-RA 1607 CG5812-RA 665..879 281..495 370 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7858573..7858929 607..251 1785 100 Minus
2L 23513712 2L 7860380..7860602 256..34 1115 100 Minus
3R 32079331 3R 27050062..27050276 281..495 370 78.1 Plus
2R 25286936 2R 11862730..11862834 475..371 180 78.1 Minus
Blast to na_te.dros performed on 2014-11-28 01:05:08 has no hits.

BO13183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:35 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 1..594 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:24 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 130..734 9..613 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:33 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 140..730 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:35 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 130..734 9..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:10 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlE-RA 140..730 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:10 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7858571..7858924 256..609 99 <- Minus
2L 7860381..7860601 35..255 100 <- Minus
2L 7860683..7860700 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:33 Download gff for BO13183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7858571..7858924 256..609 99 <- Minus
arm_2L 7860381..7860601 35..255 100 <- Minus
arm_2L 7860683..7860700 17..34 100   Minus

BO13183.pep Sequence

Translation from 16 to 625

> BO13183.pep
MHSSCVLVVLMALAALVAARPEPPRDSYSAPPSSSYQPSGPSGGYGAPAP
QYGPPQQAPVIHKHVYVHVPPPEPEYQAPRKPLYVPPPQKHYKIVFIKAP
SPPVPTAPVIPQFPQNEEKTLVYVLVKKPEEQPEIIIPTPAPTQPSKPEV
YFIRYKTQKEETGPYPNSVAPPAPEYGAPAAPPAPSAPSSSYGAPSHASF
LDH

BO13183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlE-PA 197 CG14534-PA 1..197 1..197 1071 100 Plus
TwdlBeta-PA 198 CG8986-PA 1..189 1..195 501 50.5 Plus
TwdlT-PA 286 CG5812-PA 113..233 40..163 403 63.7 Plus
TwdlC-PA 360 CG14254-PA 95..292 24..200 373 43.8 Plus
TwdlG-PC 278 CG14643-PC 82..214 33..160 280 48.5 Plus