Clone BO13187 Report

Search the DGRC for BO13187

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG15440-RA
Protein status:BO13187.pep: validated full length
Sequenced Size:1042

Clone Sequence Records

BO13187.3prime Sequence

774 bp (646 high quality bases) assembled on 2006-05-08

> BO13187.3prime
ATGGTCTAGAAAGCTTGCAAAGACTTCCAGCTGCTCAATGGGCAGCCACT
TAGAGCTCTCCAGAGCATCGTACAGACGGCGGTCGGCATCAATGGCCTCT
CGGTTCAGTTTGTCCACATCCAGGACGAACTTGTGCTCCACCAGTCCGTT
CTCATCCTCAGCTCCATTGGCGGCGGAAGCGGTCTGCTGCTGCTGCTGCT
GCTCGTACTGGGCGCTGCGTTGTGCGCTCCAGGCCTCGGCGTGCTGGGCC
AGAGTCTGCGGATTAGAGTGCGACTGCGACATGGCCTGCTGGTAGTATGC
AGCCGCATCTGTGATCGAAGCACCGGCCTGCTCGTAGTAACCTTGCCAGG
CCTGGTATCCCTGCCAATAGGTGCTGGTGGGGTCGTAGTACTGCGAGTAG
TCGGTGCCACCTGCTGCAGTCATACCGCTTCCATATCCATAGTTTGTGTT
GCCTTCGCCCACAGCACCACCCAACTCGGATTTGGGTTTGGGCACGGCAT
TGCAAATCTTTATGGGCTTGGTACCCAATCCGATGTACCCGTTCATGTCG
TACAGCGCTGATTTCTGCTCATCCTCGATGCCAAATCGCACAAAGCCGTA
ACCCTTGGAAAACCCCAGGCTGTCCAAGATCACCTTGGCGGTTTTGATCG
ATGTGAACTTGCTGGAGAACACCTTGTACAGCTGATAGTCGTCCACGTCC
GAGCTGAGGTCCCCCACCCAGACGCTAAATTCGCGTTCATTCCCGGGCAG
CTTGTACGAGTTGCTGGCCGAGTT

BO13187.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 1011 CG15440-RA 253..1008 774..19 3755 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1224 CG15440-RA 344..1099 774..19 3765 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453294..4454049 19..774 3765 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:34:43 has no hits.

BO13187.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:22 Download gff for BO13187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-PA 253..1011 18..774 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:55 Download gff for BO13187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-PA 253..1011 18..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:48:17 Download gff for BO13187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 344..1099 19..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:10 Download gff for BO13187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 344..1099 19..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:10 Download gff for BO13187.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4453294..4454049 19..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:48:17 Download gff for BO13187.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453294..4454049 19..774 99   Plus

BO13187.5prime Sequence

768 bp (629 high quality bases) assembled on 2006-05-08

> BO13187.5prime
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACGAGCAAGCCGGTGCTTCGATCACAGATGCGGCTGCATACTA
CCAGCAGGCCATGTCGCA

BO13187.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 1011 CG15440-RA 1..752 17..768 3710 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1224 CG15440-RA 92..843 17..768 3730 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453550..4454265 768..53 3550 99.7 Minus
2L 23513712 2L 4454327..4454362 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:48:36 has no hits.

BO13187.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:23 Download gff for BO13187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-PA 1..751 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:56 Download gff for BO13187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-PA 1..751 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:29 Download gff for BO13187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..842 17..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:45 Download gff for BO13187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..842 17..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:45 Download gff for BO13187.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4453551..4454265 53..767 99 <- Minus
2L 4454327..4454362 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:29 Download gff for BO13187.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453551..4454265 53..767 99 <- Minus
arm_2L 4454327..4454362 17..52 100   Minus

BO13187.complete Sequence

1042 bp assembled on 2006-10-11

GenBank Submission: FJ632708

> BO13187.complete
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACGAGCAGGCCGGTGCTTCGATCACAGATGCGGCTGCATACTA
CCAGCAGGCCATGTCGCAGTCGCACTCTAATCCGCAGACTCTGGCCCAGC
ACGCCGAGGCCTGGAGCGCACAACGCAGCGCCCAGTACGAGCAGCAGCAG
CAGCAGCAGACCGCTTCCGCCGCCAATGGAGCTGAGGATGAGAACGGACT
GGTGGAGCACAAGTTCGTCCTGGATGTGGACAAACTGAACCGAGAGGCCA
TTGATGCCGACCGCCGTCTGTACGATGCTCTGGAGAGCTCTAAGTGGCTG
CCCATTGAGCAGCTGGAAGTCTTTGCAAGCTTTCTAGACCAT

BO13187.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1011 CG15440-PA 1..1008 17..1024 5025 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-RA 1224 CG15440-RA 92..1099 17..1024 5025 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4453294..4454265 1024..53 4845 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 16:49:57 has no hits.

BO13187.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:36 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 1..1011 17..1025 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:16 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 96..1103 17..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:07 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..1099 17..1026 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:37 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 96..1103 17..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:03 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
CG15440-RA 92..1099 17..1026 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:03 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4453292..4454265 53..1026 99 <- Minus
2L 4454327..4454362 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:07 Download gff for BO13187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4453292..4454265 53..1026 99 <- Minus
arm_2L 4454327..4454362 17..52 100   Minus

BO13187.pep Sequence

Translation from 16 to 1042

> BO13187.pep
MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGY
CFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF
SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI
EDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGS
GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMS
QSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKF
VLDVDKLNREAIDADRRLYDALESSKWLPIEQLEVFASFLDH

BO13187.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15440-PA 336 CG15440-PA 1..336 1..336 1779 100 Plus
Rbp9-PH 439 CG3151-PH 117..309 13..207 153 28.4 Plus
Rbp9-PG 439 CG3151-PG 117..309 13..207 153 28.4 Plus
Rbp9-PF 439 CG3151-PF 117..309 13..207 153 28.4 Plus
Rbp9-PE 439 CG3151-PE 117..309 13..207 153 28.4 Plus