Clone Sequence Records
BO13187.3prime Sequence
774 bp (646 high quality bases) assembled on 2006-05-08
> BO13187.3prime
ATGGTCTAGAAAGCTTGCAAAGACTTCCAGCTGCTCAATGGGCAGCCACT
TAGAGCTCTCCAGAGCATCGTACAGACGGCGGTCGGCATCAATGGCCTCT
CGGTTCAGTTTGTCCACATCCAGGACGAACTTGTGCTCCACCAGTCCGTT
CTCATCCTCAGCTCCATTGGCGGCGGAAGCGGTCTGCTGCTGCTGCTGCT
GCTCGTACTGGGCGCTGCGTTGTGCGCTCCAGGCCTCGGCGTGCTGGGCC
AGAGTCTGCGGATTAGAGTGCGACTGCGACATGGCCTGCTGGTAGTATGC
AGCCGCATCTGTGATCGAAGCACCGGCCTGCTCGTAGTAACCTTGCCAGG
CCTGGTATCCCTGCCAATAGGTGCTGGTGGGGTCGTAGTACTGCGAGTAG
TCGGTGCCACCTGCTGCAGTCATACCGCTTCCATATCCATAGTTTGTGTT
GCCTTCGCCCACAGCACCACCCAACTCGGATTTGGGTTTGGGCACGGCAT
TGCAAATCTTTATGGGCTTGGTACCCAATCCGATGTACCCGTTCATGTCG
TACAGCGCTGATTTCTGCTCATCCTCGATGCCAAATCGCACAAAGCCGTA
ACCCTTGGAAAACCCCAGGCTGTCCAAGATCACCTTGGCGGTTTTGATCG
ATGTGAACTTGCTGGAGAACACCTTGTACAGCTGATAGTCGTCCACGTCC
GAGCTGAGGTCCCCCACCCAGACGCTAAATTCGCGTTCATTCCCGGGCAG
CTTGTACGAGTTGCTGGCCGAGTT
BO13187.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-PA | 1011 | CG15440-RA | 253..1008 | 774..19 | 3755 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1224 | CG15440-RA | 344..1099 | 774..19 | 3765 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4453294..4454049 | 19..774 | 3765 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:34:43 has no hits.
BO13187.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:22 Download gff for
BO13187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-PA | 253..1011 | 18..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:55 Download gff for
BO13187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-PA | 253..1011 | 18..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:48:17 Download gff for
BO13187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 344..1099 | 19..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:10 Download gff for
BO13187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 344..1099 | 19..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:10 Download gff for
BO13187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4453294..4454049 | 19..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:48:17 Download gff for
BO13187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4453294..4454049 | 19..774 | 99 | | Plus |
BO13187.5prime Sequence
768 bp (629 high quality bases) assembled on 2006-05-08
> BO13187.5prime
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACGAGCAAGCCGGTGCTTCGATCACAGATGCGGCTGCATACTA
CCAGCAGGCCATGTCGCA
BO13187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-PA | 1011 | CG15440-RA | 1..752 | 17..768 | 3710 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1224 | CG15440-RA | 92..843 | 17..768 | 3730 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4453550..4454265 | 768..53 | 3550 | 99.7 | Minus |
2L | 23513712 | 2L | 4454327..4454362 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:48:36 has no hits.
BO13187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:23 Download gff for
BO13187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-PA | 1..751 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:56 Download gff for
BO13187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-PA | 1..751 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:29 Download gff for
BO13187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..842 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:45 Download gff for
BO13187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..842 | 17..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:45 Download gff for
BO13187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4453551..4454265 | 53..767 | 99 | <- | Minus |
2L | 4454327..4454362 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:29 Download gff for
BO13187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4453551..4454265 | 53..767 | 99 | <- | Minus |
arm_2L | 4454327..4454362 | 17..52 | 100 | | Minus |
BO13187.complete Sequence
1042 bp assembled on 2006-10-11
GenBank Submission: FJ632708
> BO13187.complete
GAAGTTATCAGTCGACATGGCGTCCGTGCATTGTCAACTGTGGATGGGAA
GCCTGGAGTCCTACATGACGGAGAACTTCATAATCGCCGCTTTCCGGAAG
ATGGGCGAAGATCCCACCACGGTGCGCCTGATGCGCAACAAGTACACGGG
CGAACCAGCCGGCTACTGCTTCGTCAACTTCATATCCGATGACCATGCGC
TGGACGCGATGCACAAGCTAAACGGTAAGCCCATTCCGGGCACCAATCCC
ATTGTGCGATTCCGTCTTAACTCGGCCAGCAACTCGTACAAGCTGCCCGG
GAATGAACGCGAATTTAGCGTCTGGGTGGGCGACCTCAGCTCGGACGTGG
ACGACTATCAGCTGTACAAGGTGTTCTCCAGCAAGTTCACATCGATCAAA
ACCGCCAAGGTGATCTTGGACAGCCTGGGGTTTTCCAAGGGTTACGGCTT
TGTGCGATTTGGCATCGAGGATGAGCAGAAATCAGCGCTGTACGACATGA
ACGGGTACATCGGATTGGGTACCAAGCCCATAAAGATTTGCAATGCCGTG
CCCAAACCCAAATCCGAGTTGGGTGGTGCTGTGGGCGAAGGCAACACAAA
CTATGGATATGGAAGCGGTATGACTGCAGCAGGTGGCACCGACTACTCGC
AGTACTACGACCCCACCAGCACCTATTGGCAGGGATACCAGGCCTGGCAA
GGTTACTACGAGCAGGCCGGTGCTTCGATCACAGATGCGGCTGCATACTA
CCAGCAGGCCATGTCGCAGTCGCACTCTAATCCGCAGACTCTGGCCCAGC
ACGCCGAGGCCTGGAGCGCACAACGCAGCGCCCAGTACGAGCAGCAGCAG
CAGCAGCAGACCGCTTCCGCCGCCAATGGAGCTGAGGATGAGAACGGACT
GGTGGAGCACAAGTTCGTCCTGGATGTGGACAAACTGAACCGAGAGGCCA
TTGATGCCGACCGCCGTCTGTACGATGCTCTGGAGAGCTCTAAGTGGCTG
CCCATTGAGCAGCTGGAAGTCTTTGCAAGCTTTCTAGACCAT
BO13187.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1011 | CG15440-PA | 1..1008 | 17..1024 | 5025 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-RA | 1224 | CG15440-RA | 92..1099 | 17..1024 | 5025 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4453294..4454265 | 1024..53 | 4845 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:49:57 has no hits.
BO13187.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:36 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 1..1011 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:16 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 96..1103 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:07 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..1099 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:37 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 96..1103 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:03 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15440-RA | 92..1099 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:03 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4453292..4454265 | 53..1026 | 99 | <- | Minus |
2L | 4454327..4454362 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:07 Download gff for
BO13187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4453292..4454265 | 53..1026 | 99 | <- | Minus |
arm_2L | 4454327..4454362 | 17..52 | 100 | | Minus |
BO13187.pep Sequence
Translation from 16 to 1042
> BO13187.pep
MASVHCQLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGY
CFVNFISDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREF
SVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGI
EDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSELGGAVGEGNTNYGYGS
GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQQAMS
QSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQTASAANGAEDENGLVEHKF
VLDVDKLNREAIDADRRLYDALESSKWLPIEQLEVFASFLDH
BO13187.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15440-PA | 336 | CG15440-PA | 1..336 | 1..336 | 1779 | 100 | Plus |
Rbp9-PH | 439 | CG3151-PH | 117..309 | 13..207 | 153 | 28.4 | Plus |
Rbp9-PG | 439 | CG3151-PG | 117..309 | 13..207 | 153 | 28.4 | Plus |
Rbp9-PF | 439 | CG3151-PF | 117..309 | 13..207 | 153 | 28.4 | Plus |
Rbp9-PE | 439 | CG3151-PE | 117..309 | 13..207 | 153 | 28.4 | Plus |