Clone Sequence Records
BO13188.3prime Sequence
737 bp (680 high quality bases) assembled on 2006-05-08
> BO13188.3prime
ATGGTCTAGAAAGCTTGCTATGGCATTGGCCGCCTTGACTATCCAAGGTC
GCAGAATCGCCACATCGGCATAGACACCGGGGTAGTTGTCGTCCGCACAC
CGGTAACCCCAGGATACAATGCCCACCAGCTGGCTACTGGCCACCAAAGG
ACCTCCAGAGTCTCCCGTACAGGCATCTGCATCAGTGCTGGCAGCGCAAA
TTGTTTCCTCGCCCACAAAATCCGCACCGTAGCCAAACTTTTGCGAGGCA
CACTCTCCGCGATCGATGATCTGCAACTGGGCCTTCTGCAAGCTATCGGA
GAGGGCTCCATTATCAGTGTGGCCCCAACCCGTGACAGTGACTGTTGTTC
CACCCGATGGACTCGTACTGGCTAAATTGATGGCTCTCGTTGAGAGGCCA
AAGGTCAGTGGTGTGGACAGACGAAGCACGGCAATGTCGTAGTGCAGGAA
GCGGGAATCAAACTGCTCGTGGACTTTGTACGCCGCCACAGGAACCAATG
TGCCGCCGTAGTTGTGATTCTGTGCACCCACACGCACCTTCATCAGCGTC
ACGGATCTCTCATGTAGACAGTGTCCGGCTGTGATGATGATCTCCTTGCT
ATAGATGACTCCGCCGCACTCGTGGCGCGCACTGATCTGAATAGACACCT
GCCAGGGGGCGTTACGAATCAGCTGATCGCTTTCGCCAATAATTCGTCCA
GTGGCCCCGACATCTGACGCATCGCCGAGCACCAAAA
BO13188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7754-PA | 759 | iotaTry-RA | 38..756 | 737..19 | 3520 | 99.5 | Minus |
| CG12351-PA | 762 | deltaTry-RA | 699..725 | 88..62 | 135 | 100 | Minus |
| CG30031-PA | 762 | CG30031-RA | 699..725 | 88..62 | 135 | 100 | Minus |
| CG30025-PA | 762 | CG30025-RA | 699..725 | 88..62 | 135 | 100 | Minus |
| CG30028-PA | 762 | gammaTry-RA | 699..725 | 88..62 | 135 | 100 | Minus |
| CG18444-PA | 771 | alphaTry-RA | 699..725 | 88..62 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 818 | CG7754-RA | 61..779 | 737..19 | 3550 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11356780..11357498 | 737..19 | 3550 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:05:37 has no hits.
BO13188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:24 Download gff for
BO13188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7754-PA | 42..759 | 16..733 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:57 Download gff for
BO13188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7754-PA | 42..759 | 16..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:36 Download gff for
BO13188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 65..790 | 10..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:31 Download gff for
BO13188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 65..790 | 10..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:31 Download gff for
BO13188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11356784..11357509 | 10..733 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:36 Download gff for
BO13188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7244289..7245014 | 10..733 | 99 | | Minus |
BO13188.5prime Sequence
697 bp (633 high quality bases) assembled on 2006-05-08
> BO13188.5prime
GAAGTTATCAGTCGACATGGCTGTTTACGGAATAGTGGCTACGGTGCTGG
TCCTTTTGCTGCTCGGCGATGCGTCAGATGTCGAGGCCACTGGACGAATT
ATTGGCGGAAGCGATCAGCTGATTCGTAACGCCCCCTGGCAGGTGTCTAT
TCAGATCAGTGCGCGCCACGAGTGCGGCGGAGTCATCTATAGCAAGGAGA
TCATCATCACAGCCGGACACTGTCTACATGAGAGATCCGTGACGCTGATG
AAGGTGCGTGTGGGTGCACAGAATCACAACTACGGCGGCACATTGGTTCC
TGTGGCGGCGTACAAAGTCCACGAGCAGTTTGATTCCCGCTTCCTGCACT
ACGACATTGCCGTGCTTCGTCTGTCCACACCACTGACCTTTGGCCTCTCA
ACGAGAGCCATCAATTTAGCCAGTACGAGTCCATCGGGTGGAACAACAGT
CACTGTCACGGGTTGGGGCCACACTGATAATGGAGCCCTCTCCGATAGCT
TGCAGAAGGCCCAGTTGCAGATCATCGATCGCGGAGAGTGTGCCTCGCAA
AAGTTTGGCTACGGTGCGGATTTTGTGGGCGAGGAAACAATTTGCGCTGC
CAGCACTGATGCAGATGCCTGTACGGGAGACTCTGGAGGTCCTTTGGTGG
CCAGTTACCAGCTGGTGGGCATTGTATCCTGAGGTTACCGGTGTGCG
BO13188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7754-PA | 759 | iotaTry-RA | 1..681 | 17..697 | 3330 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 818 | CG7754-RA | 24..704 | 17..697 | 3360 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11356743..11357423 | 17..697 | 3360 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:30:00 has no hits.
BO13188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:25 Download gff for
BO13188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7754-PA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:40:58 Download gff for
BO13188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7754-PA | 1..681 | 17..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:31 Download gff for
BO13188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 19..704 | 8..697 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:17 Download gff for
BO13188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 19..704 | 8..697 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:17 Download gff for
BO13188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11356738..11357423 | 8..697 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:31 Download gff for
BO13188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7244243..7244928 | 8..697 | 98 | | Plus |
BO13188.complete Sequence
790 bp assembled on 2006-10-11
GenBank Submission: FJ632709
> BO13188.complete
GAAGTTATCAGTCGACATGGCTGTTTACGGAATAGTGGCTACGGTGCTGG
TCCTTTTGCTGCTCGGCGATGCGTCAGATGTCGAGGCCACTGGACGAATT
ATTGGCGGAAGCGATCAGCTGATTCGTAACGCCCCCTGGCAGGTGTCTAT
TCAGATCAGTGCGCGCCACGAGTGCGGCGGAGTCATCTATAGCAAGGAGA
TCATCATCACAGCCGGACACTGTCTACATGAGAGATCCGTGACGCTGATG
AAGGTGCGTGTGGGTGCACAGAATCACAACTACGGCGGCACATTGGTTCC
TGTGGCGGCGTACAAAGTCCACGAGCAGTTTGATTCCCGCTTCCTGCACT
ACGACATTGCCGTGCTTCGTCTGTCCACACCACTGACCTTTGGCCTCTCA
ACGAGAGCCATCAATTTAGCCAGTACGAGTCCATCGGGTGGAACAACAGT
CACTGTCACGGGTTGGGGCCACACTGATAATGGAGCCCTCTCCGATAGCT
TGCAGAAGGCCCAGTTGCAGATCATCGATCGCGGAGAGTGTGCCTCGCAA
AAGTTTGGCTACGGTGCGGATTTTGTGGGCGAGGAAACAATTTGCGCTGC
CAGCACTGATGCAGATGCCTGTACGGGAGACTCTGGAGGTCCTTTGGTGG
CCAGTAGCCAGCTGGTGGGCATTGTATCCTGGGGTTACCGGTGTGCGGAC
GACAACTACCCCGGTGTCTATGCCGATGTGGCGATTCTGCGACCTTGGAT
AGTCAAGGCGGCCAATGCCATAGCAAGCTTTCTAGACCAT
BO13188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 759 | CG7754-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-RA | 818 | CG7754-RA | 24..779 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11356743..11357498 | 17..772 | 3780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:44 has no hits.
BO13188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:13 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:56 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 17..788 | 8..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:31 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 24..779 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:13 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 17..788 | 8..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:25 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iotaTry-RA | 24..779 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:25 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11356743..11357498 | 17..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:31 Download gff for
BO13188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7244248..7245003 | 17..774 | 99 | | Plus |
BO13188.pep Sequence
Translation from 16 to 790
> BO13188.pep
MAVYGIVATVLVLLLLGDASDVEATGRIIGGSDQLIRNAPWQVSIQISAR
HECGGVIYSKEIIITAGHCLHERSVTLMKVRVGAQNHNYGGTLVPVAAYK
VHEQFDSRFLHYDIAVLRLSTPLTFGLSTRAINLASTSPSGGTTVTVTGW
GHTDNGALSDSLQKAQLQIIDRGECASQKFGYGADFVGEETICAASTDAD
ACTGDSGGPLVASSQLVGIVSWGYRCADDNYPGVYADVAILRPWIVKAAN
AIASFLDH
BO13188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| iotaTry-PA | 252 | CG7754-PA | 1..252 | 1..252 | 1304 | 100 | Plus |
| alphaTry-PA | 256 | CG18444-PA | 29..256 | 26..252 | 583 | 48 | Plus |
| Ser8-PA | 260 | CG4812-PA | 4..260 | 6..252 | 569 | 45 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 29..253 | 26..249 | 553 | 45.1 | Plus |
| deltaTry-PA | 253 | CG12351-PA | 29..253 | 26..249 | 553 | 45.1 | Plus |
