Clone Sequence Records
BO13190.3prime Sequence
698 bp (624 high quality bases) assembled on 2006-05-08
> BO13190.3prime
ATGGTCTAGAAAGCTTGCGCCCGCCGATTGATTCATCTTGGCCTTGAACA
TATCGGCCAACATATTGGCCTTGTTGGCATTGAGTTCCTCGTAGTCAAAC
GGTGCCATGTGATCCTTGCAGCGATCGAGCCATTGGCGGATATGTTTATA
GGGTCGAAGTTCAAATTCGAAGGCCTCCAGCTGGGAAACGGTCACCAAAA
GCGTGAGATCCGCGATGGTGAAGTGATCGGCGGCGGAAAACTGTCTGCCC
TCCAAGATTGTGTTTAGCCAGCCCACAGCCTCCGCCAATTTGGCACGCTT
TCCTTCGTCCAGGGGCGCACCAATAAACATTGTGGGGAAATAGTAGTCCG
TGAGTCGCATGTATAGGGTGCCCAAATCGAACTGGAGGCGTTGGTCCACC
AAAGCCCTCACCCTTATGTCCGTGGGATACAGTTGGTCACTCTTGCCGTA
GGCAGCCACCAGATAGGAGAGTATGGCACGACTTTCCCACAAAACCAGAC
CCTCGTCGTTCATAGTCGGCACACAGTGCTGCGGATTCATGGCCACAAAG
TCCGGTTTCAGCTGCTCCCCCTCCAAAATGTTGACGATCTTCAGCTCGAA
ATCGATGTCCAGCATCTTGGCCAGCAGCAGAATGCTGCGGCAGGGCGGAC
TGGGCGGCAAGTAGTACAGCACGGGCGGCGACATGTCGACTGAATACT
BO13190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17639-PA | 669 | CG17639-RA | 1..666 | 684..19 | 3280 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 839 | CG17639-RB | 81..746 | 684..19 | 3300 | 99.7 | Minus |
GstD11-RA | 1051 | CG17639-RA | 293..958 | 684..19 | 3300 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12385211..12385531 | 339..19 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 12384410..12384612 | 684..482 | 985 | 99 | Minus |
3R | 32079331 | 3R | 12384678..12384821 | 483..340 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:37:17 has no hits.
BO13190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:28 Download gff for
BO13190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:03 Download gff for
BO13190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:23 Download gff for
BO13190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..961 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:47 Download gff for
BO13190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..961 | 15..684 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:47 Download gff for
BO13190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12384410..12384612 | 482..684 | 99 | -> | Minus |
3R | 12384680..12384821 | 340..481 | 100 | -> | Minus |
3R | 12385211..12385534 | 15..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:23 Download gff for
BO13190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8210132..8210334 | 482..684 | 99 | -> | Minus |
arm_3R | 8210402..8210543 | 340..481 | 100 | -> | Minus |
arm_3R | 8210933..8211256 | 15..339 | 99 | | Minus |
BO13190.5prime Sequence
659 bp (609 high quality bases) assembled on 2006-05-08
> BO13190.5prime
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCC
TATAAAACATATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCAC
CGTTTGACTACAAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGAT
ATGTTTCAG
BO13190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17639-PA | 669 | CG17639-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
CG17639-PA | 669 | CG17639-RA | 538..638 | 555..655 | 480 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 839 | CG17639-RB | 81..718 | 17..655 | 3155 | 99.7 | Plus |
GstD11-RA | 1051 | CG17639-RA | 293..930 | 17..655 | 3155 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12385211..12385503 | 362..655 | 1405 | 99.3 | Plus |
3R | 32079331 | 3R | 12384410..12384612 | 17..219 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 12384678..12384821 | 218..361 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:06:56 has no hits.
BO13190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:29 Download gff for
BO13190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-PA | 1..640 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:05 Download gff for
BO13190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-PA | 1..640 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:39 Download gff for
BO13190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..932 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:00 Download gff for
BO13190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..932 | 17..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:00 Download gff for
BO13190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12384410..12384612 | 17..219 | 100 | -> | Plus |
3R | 12384680..12384821 | 220..361 | 100 | -> | Plus |
3R | 12385211..12385505 | 362..659 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:39 Download gff for
BO13190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8210132..8210334 | 17..219 | 100 | -> | Plus |
arm_3R | 8210402..8210543 | 220..361 | 100 | -> | Plus |
arm_3R | 8210933..8211227 | 362..659 | 98 | | Plus |
BO13190.complete Sequence
700 bp assembled on 2006-10-11
GenBank Submission: FJ638713
> BO13190.complete
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCC
TATAAACATATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCACC
GTTTGACTACGAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGATA
TGTTCAAGGCCAAGATGAATCAATCGGCGGGCGCAAGCTTTCTAGACCAT
BO13190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 732 | CG17639-PB | 64..729 | 17..682 | 3330 | 100 | Plus |
GstD11-RA | 669 | CG17639-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-RB | 839 | CG17639-RB | 81..746 | 17..682 | 3330 | 100 | Plus |
GstD11-RA | 1051 | CG17639-RA | 293..958 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12385211..12385531 | 362..682 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 12384410..12384612 | 17..219 | 1015 | 100 | Plus |
3R | 32079331 | 3R | 12384678..12384821 | 218..361 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:13:57 has no hits.
BO13190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:14 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-RB | 64..732 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:57 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-RB | 64..732 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:12 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..958 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:14 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17639-RB | 64..732 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:14 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD11-RA | 293..958 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:14 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12384680..12384821 | 220..361 | 100 | -> | Plus |
3R | 12384410..12384612 | 17..219 | 100 | -> | Plus |
3R | 12385211..12385531 | 362..684 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:12 Download gff for
BO13190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8210132..8210334 | 17..219 | 100 | -> | Plus |
arm_3R | 8210402..8210543 | 220..361 | 100 | -> | Plus |
arm_3R | 8210933..8211253 | 362..684 | 99 | | Plus |
BO13190.pep Sequence
Translation from 16 to 700
> BO13190.pep
MSPPVLYYLPPSPPCRSILLLAKMLDIDFELKIVNILEGEQLKPDFVAMN
PQHCVPTMNDEGLVLWESRAILSYLVAAYGKSDQLYPTDIRVRALVDQRL
QFDLGTLYMRLTDYYFPTMFIGAPLDEGKRAKLAEAVGWLNTILEGRQFS
AADHFTIADLTLLVTVSQLEAFEFELRPYKHIRQWLDRCKDHMAPFDYEE
LNANKANMLADMFKAKMNQSAGASFLDH
BO13190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD11-PA | 222 | CG17639-PA | 1..222 | 1..222 | 1163 | 100 | Plus |
GstD11-PB | 243 | CG17639-PB | 22..243 | 1..222 | 1163 | 100 | Plus |
GstD1-PB | 209 | CG10045-PB | 5..188 | 7..190 | 479 | 46.2 | Plus |
GstD1-PA | 209 | CG10045-PA | 5..188 | 7..190 | 479 | 46.2 | Plus |
GstD2-PA | 215 | CG4181-PA | 4..215 | 7..216 | 469 | 42.9 | Plus |