Clone BO13190 Report

Search the DGRC for BO13190

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:131
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG17639-RA
Protein status:BO13190.pep: validated full length
Sequenced Size:700

Clone Sequence Records

BO13190.3prime Sequence

698 bp (624 high quality bases) assembled on 2006-05-08

> BO13190.3prime
ATGGTCTAGAAAGCTTGCGCCCGCCGATTGATTCATCTTGGCCTTGAACA
TATCGGCCAACATATTGGCCTTGTTGGCATTGAGTTCCTCGTAGTCAAAC
GGTGCCATGTGATCCTTGCAGCGATCGAGCCATTGGCGGATATGTTTATA
GGGTCGAAGTTCAAATTCGAAGGCCTCCAGCTGGGAAACGGTCACCAAAA
GCGTGAGATCCGCGATGGTGAAGTGATCGGCGGCGGAAAACTGTCTGCCC
TCCAAGATTGTGTTTAGCCAGCCCACAGCCTCCGCCAATTTGGCACGCTT
TCCTTCGTCCAGGGGCGCACCAATAAACATTGTGGGGAAATAGTAGTCCG
TGAGTCGCATGTATAGGGTGCCCAAATCGAACTGGAGGCGTTGGTCCACC
AAAGCCCTCACCCTTATGTCCGTGGGATACAGTTGGTCACTCTTGCCGTA
GGCAGCCACCAGATAGGAGAGTATGGCACGACTTTCCCACAAAACCAGAC
CCTCGTCGTTCATAGTCGGCACACAGTGCTGCGGATTCATGGCCACAAAG
TCCGGTTTCAGCTGCTCCCCCTCCAAAATGTTGACGATCTTCAGCTCGAA
ATCGATGTCCAGCATCTTGGCCAGCAGCAGAATGCTGCGGCAGGGCGGAC
TGGGCGGCAAGTAGTACAGCACGGGCGGCGACATGTCGACTGAATACT

BO13190.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17639-PA 669 CG17639-RA 1..666 684..19 3280 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 839 CG17639-RB 81..746 684..19 3300 99.7 Minus
GstD11-RA 1051 CG17639-RA 293..958 684..19 3300 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12385211..12385531 339..19 1605 100 Minus
3R 32079331 3R 12384410..12384612 684..482 985 99 Minus
3R 32079331 3R 12384678..12384821 483..340 720 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:37:17 has no hits.

BO13190.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:28 Download gff for BO13190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17639-PA 1..669 15..684 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:03 Download gff for BO13190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17639-PA 1..669 15..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:23 Download gff for BO13190.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..961 15..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:47 Download gff for BO13190.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..961 15..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:47 Download gff for BO13190.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12384410..12384612 482..684 99 -> Minus
3R 12384680..12384821 340..481 100 -> Minus
3R 12385211..12385534 15..339 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:23 Download gff for BO13190.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8210132..8210334 482..684 99 -> Minus
arm_3R 8210402..8210543 340..481 100 -> Minus
arm_3R 8210933..8211256 15..339 99   Minus

BO13190.5prime Sequence

659 bp (609 high quality bases) assembled on 2006-05-08

> BO13190.5prime
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCC
TATAAAACATATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCAC
CGTTTGACTACAAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGAT
ATGTTTCAG

BO13190.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17639-PA 669 CG17639-RA 1..540 17..556 2700 100 Plus
CG17639-PA 669 CG17639-RA 538..638 555..655 480 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 839 CG17639-RB 81..718 17..655 3155 99.7 Plus
GstD11-RA 1051 CG17639-RA 293..930 17..655 3155 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12385211..12385503 362..655 1405 99.3 Plus
3R 32079331 3R 12384410..12384612 17..219 1015 100 Plus
3R 32079331 3R 12384678..12384821 218..361 720 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:06:56 has no hits.

BO13190.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:29 Download gff for BO13190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17639-PA 1..640 17..659 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:05 Download gff for BO13190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17639-PA 1..640 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:39 Download gff for BO13190.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..932 17..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:00 Download gff for BO13190.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..932 17..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:00 Download gff for BO13190.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12384410..12384612 17..219 100 -> Plus
3R 12384680..12384821 220..361 100 -> Plus
3R 12385211..12385505 362..659 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:39 Download gff for BO13190.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8210132..8210334 17..219 100 -> Plus
arm_3R 8210402..8210543 220..361 100 -> Plus
arm_3R 8210933..8211227 362..659 98   Plus

BO13190.complete Sequence

700 bp assembled on 2006-10-11

GenBank Submission: FJ638713

> BO13190.complete
GAAGTTATCAGTCGACATGTCGCCGCCCGTGCTGTACTACCTGCCGCCCA
GTCCGCCCTGCCGCAGCATTCTGCTGCTGGCCAAGATGCTGGACATCGAC
TTCGAGCTGAAGATCGTCAACATTTTGGAGGGGGAGCAGCTGAAACCGGA
CTTTGTGGCCATGAATCCGCAGCACTGTGTGCCGACTATGAACGACGAGG
GTCTGGTTTTGTGGGAAAGTCGTGCCATACTCTCCTATCTGGTGGCTGCC
TACGGCAAGAGTGACCAACTGTATCCCACGGACATAAGGGTGAGGGCTTT
GGTGGACCAACGCCTCCAGTTCGATTTGGGCACCCTATACATGCGACTCA
CGGACTACTATTTCCCCACAATGTTTATTGGTGCGCCCCTGGACGAAGGA
AAGCGTGCCAAATTGGCGGAGGCTGTGGGCTGGCTAAACACAATCTTGGA
GGGCAGACAGTTTTCCGCCGCCGATCACTTCACCATCGCGGATCTCACGC
TTTTGGTGACCGTTTCCCAGCTGGAGGCCTTCGAATTTGAACTTCGACCC
TATAAACATATCCGCCAATGGCTCGATCGCTGCAAGGATCACATGGCACC
GTTTGACTACGAGGAACTCAATGCCAACAAGGCCAATATGTTGGCCGATA
TGTTCAAGGCCAAGATGAATCAATCGGCGGGCGCAAGCTTTCTAGACCAT

BO13190.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 732 CG17639-PB 64..729 17..682 3330 100 Plus
GstD11-RA 669 CG17639-PA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-RB 839 CG17639-RB 81..746 17..682 3330 100 Plus
GstD11-RA 1051 CG17639-RA 293..958 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12385211..12385531 362..682 1605 100 Plus
3R 32079331 3R 12384410..12384612 17..219 1015 100 Plus
3R 32079331 3R 12384678..12384821 218..361 720 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:13:57 has no hits.

BO13190.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:14 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
CG17639-RB 64..732 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:57 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
CG17639-RB 64..732 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:12 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..958 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:14 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
CG17639-RB 64..732 17..686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:14 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
GstD11-RA 293..958 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:14 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12384680..12384821 220..361 100 -> Plus
3R 12384410..12384612 17..219 100 -> Plus
3R 12385211..12385531 362..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:12 Download gff for BO13190.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8210132..8210334 17..219 100 -> Plus
arm_3R 8210402..8210543 220..361 100 -> Plus
arm_3R 8210933..8211253 362..684 99   Plus

BO13190.pep Sequence

Translation from 16 to 700

> BO13190.pep
MSPPVLYYLPPSPPCRSILLLAKMLDIDFELKIVNILEGEQLKPDFVAMN
PQHCVPTMNDEGLVLWESRAILSYLVAAYGKSDQLYPTDIRVRALVDQRL
QFDLGTLYMRLTDYYFPTMFIGAPLDEGKRAKLAEAVGWLNTILEGRQFS
AADHFTIADLTLLVTVSQLEAFEFELRPYKHIRQWLDRCKDHMAPFDYEE
LNANKANMLADMFKAKMNQSAGASFLDH

BO13190.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
GstD11-PA 222 CG17639-PA 1..222 1..222 1163 100 Plus
GstD11-PB 243 CG17639-PB 22..243 1..222 1163 100 Plus
GstD1-PB 209 CG10045-PB 5..188 7..190 479 46.2 Plus
GstD1-PA 209 CG10045-PA 5..188 7..190 479 46.2 Plus
GstD2-PA 215 CG4181-PA 4..215 7..216 469 42.9 Plus