Clone Sequence Records
BO13196.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO13196.3prime
ATGGTCTAGAAAGCTTGCCTGCTGGGCAATGGGCGCCGCGGTGGGCGTGG
CCACGGGCGGGGACGAGGTGGCGGGATCCGCGTTCACGAACTCAATGGAG
GCGGAATTGATGCAGTAGCGCTTGCGGGTCGGCTTCGGACCATCCTCGAA
GACGTGACCCATGTGGGCGTTGCAGCGGGCGCAGCGGACCTCAGTGCGTA
TACGTTCTGGTATGCTGGCATCGCGGTGCAGCGTGACCTTGCCCTTGTCT
AGGACATCGTTGAAGGCCGGCCATCCGCATCCCGAGTCGTACTTGGTCTC
CGAGCTGAACAGATCCTGGTGGCACACGATGCACTGGTACACGCCCTTCT
CGTAGTGTTTGTTGTAGCAACCTGTGAAGGGTCGCTCGGTGCCCGCCTCC
TGGGTAACCTGATACTGCACCGGGGTCAGGCGCTTGCGCAGCTCCTCCTT
GTTCACCGTAACCTTCTCGCTCTTGTTATCCATGTCGACTGATAACT
BO13196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6584-PA | 468 | SelR-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
| CG6584-PC | 594 | SelR-RC | 127..591 | 483..19 | 2325 | 100 | Minus |
| CG6584-PF | 468 | SelR-RF | 1..465 | 483..19 | 2325 | 100 | Minus |
| CG6584-PB | 501 | SelR-RB | 1..277 | 483..207 | 1385 | 100 | Minus |
| CG6584-PE | 627 | SelR-RE | 127..403 | 483..207 | 1385 | 100 | Minus |
| CG6584-PD | 594 | SelR-RD | 1..277 | 483..207 | 1385 | 100 | Minus |
| CG6584-PB | 501 | SelR-RB | 307..498 | 210..19 | 960 | 100 | Minus |
| CG6584-PE | 627 | SelR-RE | 433..624 | 210..19 | 960 | 100 | Minus |
| CG6584-PD | 594 | SelR-RD | 404..591 | 206..19 | 940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RI | 992 | CG6584-RI | 245..709 | 483..19 | 2325 | 100 | Minus |
| SelR-RC | 1123 | CG6584-RC | 376..840 | 483..19 | 2325 | 100 | Minus |
| SelR-RA | 1008 | CG6584-RA | 261..725 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10863638..10863829 | 19..210 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 10866529..10866698 | 207..376 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 10866807..10866920 | 370..483 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:37:48 has no hits.
BO13196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:40 Download gff for
BO13196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-PC | 119..594 | 16..491 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:20 Download gff for
BO13196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6584-PC | 119..594 | 16..491 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:57 Download gff for
BO13196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 253..731 | 13..491 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:55 Download gff for
BO13196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 253..731 | 13..491 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:55 Download gff for
BO13196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10863632..10863825 | 13..206 | 98 | <- | Plus |
| 3R | 10866529..10866693 | 207..371 | 100 | <- | Plus |
| 3R | 10866809..10866928 | 372..491 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:57 Download gff for
BO13196.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6692531..6692650 | 372..491 | 98 | | Plus |
| arm_3R | 6689354..6689547 | 13..206 | 98 | <- | Plus |
| arm_3R | 6692251..6692415 | 207..371 | 100 | <- | Plus |
BO13196.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO13196.5prime
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGAACGTAT
ACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGGGTCACGTCT
TCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATCAATTCCGCC
TCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCCGCCCGTGGC
CACGCCCACCGCGGCGCCCATTGCCCAGCAGGCAAGCTTTCTAGACC
BO13196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6584-PA | 468 | SelR-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
| CG6584-PC | 594 | SelR-RC | 127..591 | 17..481 | 2325 | 100 | Plus |
| CG6584-PF | 468 | SelR-RF | 1..465 | 17..481 | 2325 | 100 | Plus |
| CG6584-PB | 501 | SelR-RB | 1..277 | 17..293 | 1385 | 100 | Plus |
| CG6584-PE | 627 | SelR-RE | 127..403 | 17..293 | 1385 | 100 | Plus |
| CG6584-PD | 594 | SelR-RD | 1..277 | 17..293 | 1385 | 100 | Plus |
| CG6584-PB | 501 | SelR-RB | 307..498 | 290..481 | 960 | 100 | Plus |
| CG6584-PE | 627 | SelR-RE | 433..624 | 290..481 | 960 | 100 | Plus |
| CG6584-PD | 594 | SelR-RD | 404..591 | 294..481 | 940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RI | 992 | CG6584-RI | 245..709 | 17..481 | 2325 | 100 | Plus |
| SelR-RC | 1123 | CG6584-RC | 376..840 | 17..481 | 2325 | 100 | Plus |
| SelR-RA | 1008 | CG6584-RA | 261..725 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10863638..10863829 | 481..290 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 10866529..10866698 | 293..124 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:56 has no hits.
BO13196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:41 Download gff for
BO13196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-PC | 119..594 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:21 Download gff for
BO13196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6584-PC | 119..594 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:10 Download gff for
BO13196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 253..731 | 9..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:43 Download gff for
BO13196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 253..731 | 9..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:43 Download gff for
BO13196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10863632..10863825 | 294..487 | 98 | <- | Minus |
| 3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
| 3R | 10866809..10866928 | 9..128 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:10 Download gff for
BO13196.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6689354..6689547 | 294..487 | 98 | <- | Minus |
| arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
| arm_3R | 6692531..6692650 | 9..128 | 98 | | Minus |
BO13196.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632710
> BO13196.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGAACGTAT
ACGCACTGAGGTCCGCTGCGCCCGCTGCAACGCCCACATGGGTCACGTCT
TCGAGGATGGTCCGAAGCCGACCCGCAAGCGCTACTGCATCAATTCCGCC
TCCATTGAGTTCGTGAACGCGGATCCCGCCACCTCGTCCCCGCCCGTGGC
CACGCCCACCGCGGCGCCCATTGCCCAGCAGGCAAGCTTTCTAGACCAT
BO13196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RI | 468 | CG6584-PI | 1..465 | 17..481 | 2325 | 100 | Plus |
| SelR-RC | 594 | CG6584-PC | 127..591 | 17..481 | 2325 | 100 | Plus |
| SelR-RA | 468 | CG6584-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RI | 992 | CG6584-RI | 245..709 | 17..481 | 2325 | 100 | Plus |
| SelR-RC | 1123 | CG6584-RC | 376..840 | 17..481 | 2325 | 100 | Plus |
| SelR-RA | 1008 | CG6584-RA | 261..725 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10863638..10863829 | 481..290 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 10866529..10866698 | 293..124 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:21:17 has no hits.
BO13196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:43 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 1..468 | 17..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:01 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RI | 252..730 | 9..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:48 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 261..725 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:43 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RI | 252..730 | 9..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:45 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 261..725 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:45 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10863635..10863825 | 294..483 | 98 | <- | Minus |
| 3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
| 3R | 10866809..10866920 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:48 Download gff for
BO13196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6689357..6689547 | 294..483 | 98 | <- | Minus |
| arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
| arm_3R | 6692531..6692642 | 17..128 | 100 | | Minus |
BO13196.pep Sequence
Translation from 16 to 499
> BO13196.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPERIRTEVR
CARCNAHMGHVFEDGPKPTRKRYCINSASIEFVNADPATSSPPVATPTAA
PIAQQASFLDH
BO13196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-PI | 155 | CG6584-PI | 1..155 | 1..155 | 842 | 100 | Plus |
| SelR-PA | 155 | CG6584-PA | 1..155 | 1..155 | 842 | 100 | Plus |
| SelR-PC | 197 | CG6584-PC | 43..197 | 1..155 | 842 | 100 | Plus |
| SelR-PB | 166 | CG6584-PB | 1..166 | 1..155 | 820 | 93.4 | Plus |
| SelR-PE | 208 | CG6584-PE | 43..208 | 1..155 | 820 | 93.4 | Plus |
