Clone Sequence Records
BO13201.3prime Sequence
756 bp (742 high quality bases) assembled on 2006-05-08
> BO13201.3prime
ATGGTCTAGAAAGCTTGCATCATAAGCATTAACTAGCTTGTGTAGCCGAA
CATTAACTTGGTTCCGAAATCGCTCCTTTTTAAATTGATGCAAGTCATGT
CCTTTGCTATAAACATAAAATGGTACTGTGCCTTTTCGCTGTAAAACTAT
TTGATTTCCTAATGTGAAATGCATATAGTCAATTTCTTGGGTGTTCTGCG
TTAGAGTTGAATTAGGAAAAGGCATTCCTTTTACATCAATGAATCTATTT
CTTGTCTTTTGCAGTTGAACAATGTTTGAATTTGTTTCGTTAGCAATATA
CTGATAGGACCTTTGCGTCATCAGACCAATAAAAAATGCCTTTGCAATAT
TCTGGATATTCGTAGACCCCTCAATTTTGGCATATAAATCCTTGATACCT
ATAACTTTACAAATTGTCTGAATTGCCCGGTGACAGACTAAGCCGTATCC
ATCAGGTTTCTGAAAACAAAAAATTTTTGTTTTTCCGAAATCTGTACGAA
AGTCATGAAAAATTGTTCTATTTTCACAAAGGCTTATATTGATTAGTTTT
TGTCCTGCTCGGTTCTTTGATTTTCGAAGGGCCGTACGAACTTCTGGCGC
TTTAGCGGTAGCGAATCCTGCCAAACCATTACCATTTCCCGTGACTGAAA
GAACGGAATATCTTCGTTTTCTTCCCATATTTCCTTTCATAATAAAAACA
ATTTTGTTTTTCTAAAACTCTAAGTATCAAATGACACAAACTCTTCTTCG
CCAACA
BO13201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40049-PC | 1224 | mRpS5-RC | 530..1221 | 710..19 | 3460 | 100 | Minus |
| CG40049-PA | 1224 | mRpS5-RA | 530..1221 | 710..19 | 3460 | 100 | Minus |
| CG40049-PB | 2748 | mRpS5-RB | 530..1182 | 710..58 | 3265 | 100 | Minus |
| CG40049-PB | 2748 | mRpS5-RB | 1361..2013 | 710..58 | 3265 | 100 | Minus |
| CG40049-PB | 2748 | mRpS5-RB | 2192..2748 | 710..154 | 2785 | 100 | Minus |
| CG40049-PB | 2748 | mRpS5-RB | 486..519 | 756..723 | 145 | 97 | Minus |
| CG40049-PB | 2748 | mRpS5-RB | 1317..1350 | 756..723 | 145 | 97 | Minus |
| CG40049-PB | 2748 | mRpS5-RB | 2148..2181 | 756..723 | 145 | 97 | Minus |
| CG40049-PC | 1224 | mRpS5-RC | 486..519 | 756..723 | 145 | 97 | Minus |
| CG40049-PA | 1224 | mRpS5-RA | 486..519 | 756..723 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1379 | CG40049-RA | 598..1333 | 756..19 | 3625 | 99.6 | Minus |
| mRpS5-RC | 1422 | CG40049-RC | 641..1376 | 756..19 | 3625 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24542753..24543488 | 756..19 | 3575 | 99.6 | Minus |
| 3L | 28110227 | 3L | 24546251..24546986 | 756..19 | 3575 | 99.6 | Minus |
| 3L | 28110227 | 3L | 24549749..24550484 | 756..19 | 3575 | 99.6 | Minus |
| 3L | 28110227 | 3L | 24553247..24553982 | 756..19 | 3575 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-10 14:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 1578..1654 | 664..740 | 124 | 67.5 | Plus |
BO13201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:17 Download gff for
BO13201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40049-PC | 487..1224 | 15..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:52:57 Download gff for
BO13201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 642..1382 | 10..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:53 Download gff for
BO13201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 642..1382 | 10..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:53 Download gff for
BO13201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24542754..24543494 | 10..755 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:52:57 Download gff for
BO13201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24535854..24536594 | 10..755 | 99 | | Minus |
BO13201.5prime Sequence
792 bp (752 high quality bases) assembled on 2006-05-08
> BO13201.5prime
GAAGTTATCAGTCGACATGAGTCAAACATTGATCCGTCGTCTCTTCAATC
AAGCTTGTAGCAGAAATATTTTTATTTTGAACCAAAGCTTGTTATCTTCA
CATGAACCCATTTTACCAGGTTACATTGGTTTACGTAATACCAGCTTCTT
TAACAAATTACCTGCTGAAGACATTTGGCGCGGAGTAACTGCGGTTAGCA
ATGCTGGAAAAAAAAGAGGCCGTGGGAAAGGAAGTGGAAAAAAAGTTGCA
AAGGATCTTAACAAAGGGCAATCTATCGGATTCGGAAAATGCGGTCGCAT
ATGGCCTGGATTGAATTCACCTCTTATACGAGGAAACGAGTTAATTAATC
AGCAGAAACTCAATGAGAATTTAGATAGAGAAAATGGTATTTTAAAATTA
CGCGATTCAATGGGAAGTTTTAAATTGATGAAACTAAATCCAATAGACCG
AGGTTGGTCTGGAAGTAAAATGCCCGGCCGAAGCATTGGACCTCCTGATC
CTGTTGGCGACGAAGAGTTTGTGTCATTTGATACTAGAGTTTTAGAAAAC
AAAATTGTTTTTATTATGAAAGGAAATATGGGAAGAAAACGAAGATATTC
CGTTCTTTCAGTCACGGGAAATGGTAATGGTTTGGCAGGATTCGCTACCG
CTAAAGCGCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCA
GGACAAAAACTAATCAATATAAGCCTTTGTGAAAATAGAACAATTTTTCA
TGACTTTCGTACAGATTTCGGAAAAACAAAAATTTTTTGTTT
BO13201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40049-PB | 2748 | mRpS5-RB | 1..776 | 17..792 | 3880 | 100 | Plus |
| CG40049-PC | 1224 | mRpS5-RC | 1..776 | 17..792 | 3880 | 100 | Plus |
| CG40049-PA | 1224 | mRpS5-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
| CG40049-PB | 2748 | mRpS5-RB | 2014..2438 | 368..792 | 2125 | 100 | Plus |
| CG40049-PB | 2748 | mRpS5-RB | 1183..1607 | 368..792 | 2125 | 100 | Plus |
| CG40049-PD | 142 | mRpS5-RD | 1..142 | 17..158 | 710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1379 | CG40049-RA | 113..888 | 17..792 | 3880 | 100 | Plus |
| mRpS5-RC | 1422 | CG40049-RC | 156..931 | 17..792 | 3880 | 100 | Plus |
| mRpS5-RD | 479 | CG40049-RD | 113..254 | 17..158 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24542410..24543043 | 159..792 | 3170 | 100 | Plus |
| 3L | 28110227 | 3L | 24546110..24546541 | 361..792 | 2160 | 100 | Plus |
| 3L | 28110227 | 3L | 24549608..24550039 | 361..792 | 2160 | 100 | Plus |
| 3L | 28110227 | 3L | 24553106..24553537 | 361..792 | 2160 | 100 | Plus |
| 3L | 28110227 | 3L | 24537475..24537616 | 17..158 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 24536289..24536364 | 83..158 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:43 has no hits.
BO13201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:18 Download gff for
BO13201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40049-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:07 Download gff for
BO13201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 150..931 | 11..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:41 Download gff for
BO13201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 150..931 | 11..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:41 Download gff for
BO13201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24537469..24537616 | 11..158 | 97 | -> | Plus |
| 3L | 24542410..24543043 | 159..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:07 Download gff for
BO13201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24530568..24530715 | 11..158 | 97 | -> | Plus |
| arm_3L | 24535510..24536143 | 159..792 | 100 | | Plus |
BO13201.complete Sequence
1255 bp assembled on 2006-10-11
GenBank Submission: FJ632711
> BO13201.complete
GAAGTTATCAGTCGACATGAGTCAAACATTGATCCGTCGTCTCTTCAATC
AAGCTTGTAGCAGAAATATTTTTATTTTGAACCAAAGCTTGTTATCTTCA
CATGAACCCATTTTACCAGGTTACATTGGTTTACGTAATACCAGCTTCTT
TAACAAATTACCTGCTGAAGACATTTGGCGCGGAGTAACTGCGGTTAGCA
ATGCTGGAAAAAAAAGAGGCCGTGGGAAAGGAAGTGGAAAAAAAGTTGCA
AAGGATCTTAACAAAGGGCAATCTATCGGATTCGGAAAATGCGGTCGCAT
ATGGCCTGGATTGAATTCACCTCTTATACGAGGAAACGAGTTAATTAATC
AGCAGAAACTCAATGAGAATTTAGATAGAGAAAATGGTATTTTAAAATTA
CGCGATTCAATGGGAAGTTTTAAATTGATGAAACTAAATCCAATAGACCG
AGGTTGGTCTGGAAGTAAAATGCCCGGCCGAAGCATTGGACCTCCTGATC
CTGTTGGCGACGAAGAGTTTGTGTCATTTGATACTAGAGTTTTAGAAAAC
AAAATTGTTTTTATTATGAAAGGAAATATGGGAAGAAAACGAAGATATTC
CGTTCTTTCAGTCACGGGAAATGGTAATGGTTTGGCAGGATTCGCTACCG
CTAAAGCGCCAGAAGTTCGTACGGCCCTTCGAAAATCAAAGAACCGAGCA
GGACAAAAACTAATCAATATAAGCCTTTGTGAAAATAGAACAATTTTTCA
TGACTTTCGTACAGATTTCGGAAAAACAAAAATTTTTTGTTTTCAGAAAC
CTGATGGATACGGCTTAGTCTGTCACCGGGCAATTCAGACAATTTGTAAA
GTTATAGGTATCAAGGATTTATATGCCAAAATTGAGGGGTCTACGAATAT
CCAGAATATTGCAAAGGCATTTTTTATTGGTCTGATGACGCAAAGGTCCT
ATCAGTATATTGCTAACGAAACAAATTCAAACATTGTTCAACTGCAAAAG
ACAAGAAATAGATTCATTGATGTAAAAGGAATGCCTTTTCCTAATTCAAC
TCTAACGCAGAACACCCAAGAAATTGACTATATGCATTTCACATTAGGAA
ATCAAATAGTTTTACAGCGAAAAGGCACAGTACCATTTTATGTTTATAGC
AAAGGACATGACTTGCATCAATTTAAAAAGGAGCGATTTCGGAACCAAGT
TAATGTTCGGCTACACAAGCTAGTTAATGCTTATGATGCAAGCTTTCTAG
ACCAT
BO13201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1224 | CG40049-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| mRpS5-RC | 1224 | CG40049-PC | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| mRpS5-RD | 144 | CG40049-PD | 1..142 | 17..158 | 710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-RA | 1379 | CG40049-RA | 113..1333 | 17..1237 | 6105 | 100 | Plus |
| mRpS5-RC | 1422 | CG40049-RC | 156..1376 | 17..1237 | 6105 | 100 | Plus |
| mRpS5-RD | 479 | CG40049-RD | 113..254 | 17..158 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24542410..24543488 | 159..1237 | 5395 | 100 | Plus |
| 3L | 28110227 | 3L | 24546110..24546986 | 361..1237 | 4385 | 100 | Plus |
| 3L | 28110227 | 3L | 24549608..24550484 | 361..1237 | 4385 | 100 | Plus |
| 3L | 28110227 | 3L | 24553106..24553982 | 361..1237 | 4385 | 100 | Plus |
| 3L | 28110227 | 3L | 24537475..24537616 | 17..158 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 24536289..24536364 | 83..158 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:13:09 has no hits.
BO13201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:15 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 1..1224 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:59 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 139..1371 | 11..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:00 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 156..1376 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:16 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RA | 139..1371 | 11..1246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:33 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS5-RC | 156..1376 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:33 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24537475..24537616 | 17..158 | 100 | -> | Plus |
| 3L | 24542410..24543488 | 159..1239 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:00 Download gff for
BO13201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24530574..24530715 | 17..158 | 100 | -> | Plus |
| arm_3L | 24535510..24536588 | 159..1239 | 99 | | Plus |
BO13201.pep Sequence
Translation from 16 to 1255
> BO13201.pep
MSQTLIRRLFNQACSRNIFILNQSLLSSHEPILPGYIGLRNTSFFNKLPA
EDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLN
SPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMKLNPIDRGWSGS
KMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVT
GNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTD
FGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGSTNIQNIAK
AFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLTQNT
QEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQVNVRLH
KLVNAYDASFLDH
BO13201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS5-PA | 407 | CG40049-PA | 1..407 | 1..407 | 2130 | 100 | Plus |
| mRpS5-PC | 407 | CG40049-PC | 1..407 | 1..407 | 2130 | 100 | Plus |
| mRpS5-PD | 47 | CG40049-PD | 1..47 | 1..47 | 240 | 100 | Plus |
