Clone Sequence Records
BO13202.3prime Sequence
723 bp (660 high quality bases) assembled on 2006-05-08
> BO13202.3prime
ATGGTCTAGAAAGCTTGCTAAGTATGAATCGCAGTCCAGCCATAGATCCG
GATTGAAGTAGGGCGAACGAAGTGGATATGTCCGTTTGGACGTGATCGTA
AAACCCGATTCCAACTGCTCGGTTTGCTGACGTGGCGCAACCAGATACTT
GTCCGCCCGCTCGCTGGCCGGTTGATACTTTGCTGCCGCCACAGCGTTGA
ATATTCGTGTGCTCCATATCTCCTTTTTCGGTGCCTCGTTCGGCGACGAC
ATTGGGGAGACAGGAACCTTCGCGGATACAGGCGAATCTACAGATTTTGG
ATATTCGGGATCAGCATTTACTCTGCCCGGGAAAGCAATCCCGTGTTTGA
CCTTCATGTGCATCAGGAGGAAGGTCCGCCGCTTGTAGCGTTTCTTGCAT
GTGAGGCACTTATGCTGCTTGGTCAAATTCTTCTCTAACCGATTCACAGC
CAGCTCTTTATTCCCGTGGAAGTGGCTCTCGTGGTATTTCAGCGACTGGC
GGGAGCTCAATCGCTTTCCGCACCAATTGCACTCGAACTGACCTTGATTG
AAAGCCAAGGATTTGGCATTTGGGGGCTTGGGTTCGATCAAAACCGCCGA
TCGGGACTTCCCTGCACCCGCATCCTGAATCGGATCTTGTGCTTGGGGTC
GGGGATTTTCCAAGACCGGTGGTTCCTCCACCCTTGTGAGAATTCCTTCC
GGCACACAAAGGTTTTGCATTTC
BO13202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-PA | 1464 | CG18446-RA | 757..1461 | 723..19 | 3500 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-RA | 2115 | CG18446-RA | 1037..1741 | 723..19 | 3510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9872506..9873180 | 723..49 | 3360 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:12:06 has no hits.
BO13202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:43 Download gff for
BO13202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-PA | 757..1464 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:22 Download gff for
BO13202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-PA | 757..1464 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:58:19 Download gff for
BO13202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 1037..1747 | 11..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:16 Download gff for
BO13202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 1037..1747 | 11..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:16 Download gff for
BO13202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9872506..9873179 | 50..723 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:58:19 Download gff for
BO13202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5760011..5760684 | 50..723 | 99 | -> | Minus |
BO13202.5prime Sequence
824 bp (800 high quality bases) assembled on 2006-05-08
> BO13202.5prime
GAAGTTATCACTCGACATGGACGCTGAAAGTGATAGCGATGTGGAGATCA
TAGAGACGGAACTCATGAACCATCATCACCACCATCGCCAGACGGAACCA
AAGAGGCATCCCGCAAAGATGTACCCGCAAATTCCATCCGCCATACCCTC
CCCACCATTTTCACCCACTGATCCTACGGATATGCCGCTGGTCAAGGAGA
TTCTGGCTCGCAGTGAACATATAAATGTTCCCGAAGGAACCGTGCTCTGT
GTTCCGTGCTACCTGTGCAAACAGCCCTTCAATGATATTGAATCCTTCAA
GGAGCACCTCACCCAACATGCGGCGGAAATTAACGCCTGGAATAACACGC
GTGCGCAGGAGCAGACACCTCCGCCGACGATAACACCCTTTGTTCAGTCC
ATGAATAAACCATTCGTGCATCCCACAGATCAGCACTTATTTCATTCCAT
TGATCATGGTGACATGGATCACCATCACAATGCCCACTACCGCAATCGGA
TGGAGTTTGGCTGTCCGCCACCCATGGATTTTTACTCACCGCCGCTCGAA
CCAGAAATTCCATTTCAAATGCCTGCGGTTCATCAACATCCGATTCAGAT
ACCACCCATGTATATGACCGCTCAGCATACGGCTTATGAGCCACCAGTGC
AGTTTTTAGGTCATCGGCCACTCGAACTGCGCCAAAAACTTCCAATGTCA
CCGCAATCTCCTCTGGAGCCTTCTGGTCATCCAATGGCAAGCGCGATTCC
CAGTAACCAACATACTTCGCTTGAAATGCAAACCTTTGTGTGCCGGAAGG
AATTCTCACAAGGGTGGAGGAACC
BO13202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-PA | 1464 | CG18446-RA | 1..766 | 17..782 | 3805 | 99.8 | Plus |
| CG18446-PA | 1464 | CG18446-RA | 765..809 | 780..824 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-RA | 2115 | CG18446-RA | 280..1089 | 16..824 | 4010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9871749..9872558 | 16..824 | 3985 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:37 has no hits.
BO13202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:44 Download gff for
BO13202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-PA | 1..809 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:24 Download gff for
BO13202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-PA | 1..809 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:05 Download gff for
BO13202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 280..1089 | 16..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:40 Download gff for
BO13202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 280..1089 | 16..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:40 Download gff for
BO13202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9871749..9872558 | 16..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:05 Download gff for
BO13202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5759254..5760063 | 16..824 | 99 | | Plus |
BO13202.complete Sequence
1495 bp assembled on 2008-08-14
GenBank Submission: FJ632712
> BO13202.complete
GAAGTTATCACTCGACATGGACGCTGAAAGTGATAGCGATGTGGAGATCA
TAGAGACGGAACTCATGAACCATCATCACCACCATCGCCAGACGGAACCA
AAGAGGCATCCCGCAAAGATGTACCCGCAAATTCCATCCGCCATACCCTC
CCCACCATTTTCACCCACTGATCCTACGGATATGCCGCTGGTCAAGGAGA
TTCTGGCTCGCAGTGAACATATAAATGTTCCCGAAGGAACCGTGCTCTGT
GTTCCGTGCTACCTGTGCAAACAGCCCTTCAATGATATTGAATCCTTCAA
GGAGCACCTCACCCAACATGCGGCGGAAATTAACGCCTGGAATAACACGC
GTGCGCAGGAGCAGACACCTCCGCCGACGATAACACCCTTTGTTCAGTCC
ATGAATAAACCATTCGTGCATCCCACAGATCAGCACTTATTTCATTCCAT
TGATCATGGTGACATGGATCACCATCACAATGCCCACTACCGCAATCGGA
TGGAGTTTGGCTGTCCGCCACCCATGGATTTTTACTCACCGCCGCTCGAA
CCAGAAATTCCATTTCAAATGCCTGCGGTTCATCAACATCCGATTCAGAT
ACCACCCATGTATATGACCGCTCAGCATACGGCTTATGAGCCACCAGTGC
AGTTTTTAGGTCATCGGCCACTCGAACTGCGCCAAAAACTTCCAATGTCA
CCGCAATCTCCTCTGGAGCCTTCTGGTCATCCAATGGCAAGCGCGATTCC
AAGTAACCAACATACTTCGCTTGAAATGCAAAACCTTTGTGTGCCGGAAG
GAATTCTCACAAGGGTGGAGGAACCACCGGTCTTGGAAAATCCCCGACCC
CAAGCACAAGATCCGATTCAGGATGCGGGTGCAGGGAAGTCCCGATCGGC
GGTTCTGATCGAACCCAAGCCCCCAAATGCCAAATCCTTGGCTTTCAATC
AAGGTCAGTTCGAGTGCAATTGGTGCGGAAAGCGATTGAGCTCCCGCCAG
TCGCTGAAATACCACGAGAGCCACTTCCACGGGAATAAAGAGCTGGCTGT
GAATCGGTTAGAGAAGAATTTGACCAAGCAGCATAAGTGCCTCACATGCA
AGAAACGCTACAAGCGGCGGACCTTCCTCCTGATGCACATGAAGGTCAAA
CACGGGATTGCTTTCCCGGGCAGAGTAAATGCTGATCCCGAATATCCAAA
ATCTGTAGATTCGCCTGTATCCGCGAAGGTTCCTGTCTCCCCAATGTCGT
CGCCGAACGAGGCACCGAAAAAGGAGATATGGAGCACACGAATATTCAAC
GCTGTGGCGGCAGCAAAGTATCAACCGGCCAGCGAGCGGGCGGACAAGTA
TCTGGTTGCGCCACGTCAGCAAACCGAGCAGTTGGAATCGGGTTTTACGA
TCACGTCCAAACGGACATATCCACTTCGTTCGCCCTACTTCAATCCGGAT
CTATGGCTGGACTGCGATTCATACTTAGCAAGCTTTCTAGACCAT
BO13202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-RA | 1464 | CG18446-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-RA | 2115 | CG18446-RA | 280..1741 | 16..1477 | 7310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9871749..9873180 | 16..1447 | 7160 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:42 has no hits.
BO13202.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:12 Download gff for
BO13202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 278..1745 | 16..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:24 Download gff for
BO13202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 281..1741 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:08 Download gff for
BO13202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 279..1739 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:28 Download gff for
BO13202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18446-RA | 281..1741 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:28 Download gff for
BO13202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9871750..9873179 | 17..1446 | 100 | -> | Plus |
| 2R | 9873242..9873272 | 1447..1479 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:24 Download gff for
BO13202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5759255..5760684 | 17..1446 | 100 | -> | Plus |
| arm_2R | 5760747..5760777 | 1447..1479 | 93 | | Plus |
BO13202.pep Sequence
Translation from 16 to 1495
> BO13202.pep
MDAESDSDVEIIETELMNHHHHHRQTEPKRHPAKMYPQIPSAIPSPPFSP
TDPTDMPLVKEILARSEHINVPEGTVLCVPCYLCKQPFNDIESFKEHLTQ
HAAEINAWNNTRAQEQTPPPTITPFVQSMNKPFVHPTDQHLFHSIDHGDM
DHHHNAHYRNRMEFGCPPPMDFYSPPLEPEIPFQMPAVHQHPIQIPPMYM
TAQHTAYEPPVQFLGHRPLELRQKLPMSPQSPLEPSGHPMASAIPSNQHT
SLEMQNLCVPEGILTRVEEPPVLENPRPQAQDPIQDAGAGKSRSAVLIEP
KPPNAKSLAFNQGQFECNWCGKRLSSRQSLKYHESHFHGNKELAVNRLEK
NLTKQHKCLTCKKRYKRRTFLLMHMKVKHGIAFPGRVNADPEYPKSVDSP
VSAKVPVSPMSSPNEAPKKEIWSTRIFNAVAAAKYQPASERADKYLVAPR
QQTEQLESGFTITSKRTYPLRSPYFNPDLWLDCDSYLASFLDH
BO13202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18446-PA | 487 | CG18446-PA | 1..487 | 1..487 | 2666 | 100 | Plus |
