Clone Sequence Records
BO13203.5prime Sequence
635 bp (634 high quality bases) assembled on 2006-05-08
> BO13203.5prime
GAAGTTATCCCCCTACATGTCTACGACACCAAAATCGAGCGAAGATTTGC
TGGGCGAATCTTGGATCGAACTCAGCACAACAGCTGCGATGGCTGGCATC
AAGAGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTA
CCTGAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTG
TCGTCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAG
AGTCCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAG
AAACGTGTACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAG
GCAATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAAC
ATTGAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGAC
TAACACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGT
TCTCCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTG
CTGCTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCT
TACCCGTGTGGTCATTGACGCAAGCTTTCTAGACC
BO13203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PA | 606 | CG5059-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
| CG5059-PB | 582 | CG5059-RB | 17..579 | 57..619 | 2815 | 100 | Plus |
| CG5059-PC | 534 | CG5059-RC | 1..531 | 89..619 | 2655 | 100 | Plus |
| CG5059-PD | 534 | CG5059-RD | 1..531 | 89..619 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 1725 | CG5059-RA | 387..989 | 17..619 | 3015 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 244..806 | 57..619 | 2815 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 178..740 | 57..619 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516133 | 336..56 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 571..388 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 390..327 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 619..570 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 20518968..20519007 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:31 has no hits.
BO13203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:45 Download gff for
BO13203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:25 Download gff for
BO13203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:03 Download gff for
BO13203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..995 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:38 Download gff for
BO13203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..995 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:38 Download gff for
BO13203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515329..20515383 | 571..624 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 391..570 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 329..390 | 100 | <- | Minus |
| 3L | 20515861..20516132 | 57..328 | 100 | <- | Minus |
| 3L | 20518968..20519007 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:03 Download gff for
BO13203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 571..624 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 391..570 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 329..390 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 57..328 | 100 | <- | Minus |
| arm_3L | 20512068..20512107 | 17..56 | 100 | | Minus |
BO13203.complete Sequence
637 bp assembled on 2006-10-11
GenBank Submission: FJ632713
> BO13203.complete
GAAGTTATCAGTCGACATGTCTACGACACCAAAATCGAGCGAAGATTTGC
TGGGCGAATCTTGGATCGAACTCAGCACAACAGCTGCGATGGCTGGCATC
AAGAGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTA
CCTGAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTG
TCGTCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAG
AGTCCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAG
AAACGTGTACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAG
GCAATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAAC
ATTGAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGAC
TAACACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGT
TCTCCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTG
CTGCTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCT
TACCCGTGTGGTCATTGACGCAAGCTTTCTAGACCAT
BO13203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 606 | CG5059-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
| CG5059-RB | 582 | CG5059-PB | 17..579 | 57..619 | 2815 | 100 | Plus |
| CG5059-RE | 534 | CG5059-PE | 1..531 | 89..619 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 1725 | CG5059-RA | 387..989 | 17..619 | 3015 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 244..806 | 57..619 | 2815 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 178..740 | 57..619 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516133 | 336..56 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 571..388 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 390..327 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 619..570 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 20518968..20519007 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:30 has no hits.
BO13203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:18 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:03 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 426..1034 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:56:16 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..989 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:18 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 426..1034 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:00 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..989 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:00 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515861..20516132 | 57..328 | 100 | <- | Minus |
| 3L | 20518968..20519007 | 17..56 | 100 | | Minus |
| 3L | 20515332..20515383 | 571..621 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 391..570 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 329..390 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:56:16 Download gff for
BO13203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508432..20508483 | 571..621 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 391..570 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 329..390 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 57..328 | 100 | <- | Minus |
| arm_3L | 20512068..20512107 | 17..56 | 100 | | Minus |
BO13203.pep Sequence
Translation from 16 to 637
> BO13203.pep
MSTTPKSSEDLLGESWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLR
EAQRESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYIN
YWTKGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYS
IRLKRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVI
DASFLDH
BO13203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PA | 201 | CG5059-PA | 1..201 | 1..201 | 1046 | 100 | Plus |
| CG5059-PB | 193 | CG5059-PB | 6..193 | 14..201 | 979 | 99.5 | Plus |
| CG5059-PE | 177 | CG5059-PE | 1..177 | 25..201 | 927 | 100 | Plus |
| CG5059-PD | 177 | CG5059-PD | 1..177 | 25..201 | 927 | 100 | Plus |
| CG5059-PC | 177 | CG5059-PC | 1..177 | 25..201 | 927 | 100 | Plus |
