Clone Sequence Records
BO13204.3prime Sequence
653 bp (537 high quality bases) assembled on 2006-05-08
> BO13204.3prime
ATGGTCTAGAAAGCTTGCATTTTTAGTTATTTGAAAGTTGTTCTTCAGCG
CCTGCCAGCATTCGTAATATGCGGCATCCAGTTTTTGGCAGGTCTCCTCG
CCCCACTTGGTAACGGCCAAACTTAGAGAGGATTCGAACATGAAGGCCTG
AGTTCCCTCGGCCACGCGTTCCGGCACCAGTTTGGCATTCGAGGCACCTT
CAAAGCACTTGACATCTGGACCATGTGGCGTCATCATGGAATGGAGGGTC
GCTCCTCCTGCCGCAAAGCCATCCTCCTTGGCCTCATACTTGCCCAGAAT
TAGGCCCATGAACTCGCTCATGCAGTTCCTGTGGTAATAGGGTGGCCTGA
AGGTGTGCTCCTGCACTGACCAACGGGGTGGAAAGATCACAAAGTCTGCT
ATGGCCGTTCCAGCTCGTAAGCTGGGACAAGTGAGCACGGTAAAAAATGC
TTGGGGTCACAATGGTCAAAGCTAACCGAGTTAATCACCATGAACTTGGA
CAGATTCGTACTTGAAGGGCACATTAGTTACCATGCCAAGCCACCACATC
GAAAGACGGTGTGATTTTTGCTTGGCCACGAAGAGGCGACCTTGGAATTT
CGAAATTACCTGGAAGTCCTTTTCATCCCGATCCTCGAACCACGCCACAG
GAG
BO13204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4779-PA | 1320 | hgo-RA | 890..1317 | 446..19 | 2140 | 100 | Minus |
CG4779-PA | 1320 | hgo-RA | 689..776 | 653..566 | 390 | 97.7 | Minus |
CG4779-PA | 1320 | hgo-RA | 833..886 | 505..452 | 270 | 100 | Minus |
CG4779-PA | 1320 | hgo-RA | 787..815 | 553..525 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hgo-RA | 1445 | CG4779-RA | 729..1357 | 653..19 | 2995 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11137761..11138049 | 623..329 | 1160 | 97.6 | Minus |
2L | 23513712 | 2L | 11138104..11138286 | 329..147 | 915 | 100 | Minus |
2L | 23513712 | 2L | 11138347..11138477 | 149..19 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:52:11 has no hits.
BO13204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:46 Download gff for
BO13204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-PA | 689..1320 | 18..653 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:26 Download gff for
BO13204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4779-PA | 689..1320 | 18..653 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:53:28 Download gff for
BO13204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 729..1361 | 13..653 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:59:17 Download gff for
BO13204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 729..1361 | 13..653 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:59:17 Download gff for
BO13204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11137666..11137701 | 618..653 | 94 | -> | Minus |
2L | 11137767..11138048 | 330..617 | 97 | -> | Minus |
2L | 11138104..11138285 | 148..329 | 100 | -> | Minus |
2L | 11138349..11138479 | 14..147 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:53:28 Download gff for
BO13204.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11137666..11137701 | 618..653 | 94 | -> | Minus |
arm_2L | 11137767..11138048 | 330..617 | 97 | -> | Minus |
arm_2L | 11138104..11138285 | 148..329 | 100 | -> | Minus |
arm_2L | 11138349..11138479 | 14..147 | 97 | -> | Minus |
BO13204.5prime Sequence
586 bp (563 high quality bases) assembled on 2006-05-08
> BO13204.5prime
GAAGTTATCAGTCTACATGTCGGAATACAAGTACCTCTCGGGTTTTGGGT
CTCACTTCTCATCTGAGGATGAGCGGTATCCCAACTCCTTGCCAGTGGGA
CAGAACTCACCTCAAGTGTGCCCATACAAACTCTATGCGGAGCAGCTATC
CGGAAGTGCCTTCACTGCGCCCAGGACGGAGAATATGCGCACGTGGCTCT
ACAGGAAGTTGCCCTCTGCCGCGCACCTTCCATTCCAGCCCTTCAAGGGA
GCTGAGTACTTTAGTCAAAACTGGGATGAGCAGCCACCGAATCCAAACCA
GCTTCGTTGGAAACCCTTTGACTTGCCTCCAAAGGATGGAAAAAATGTGA
ACTTTGTGGAAGGCTTGCACACGGTTTGTGGAGCGGGAGATCCCAGATCT
CGTCATGGTCTTGCCATACACATTTACTCCTGCAATGGCTCGATGGATAA
CTCAGCTTTCTATAACAGCGATGGTGATTTTTTGATTGTGCCCCCAGCAG
GAGTCTTAGATATAACCACAGAGTTTGGAAGGATGTCTGTAACCCCAATT
GAGATCTGCGTTATACCACAGGGAATACAATTTGCT
BO13204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4779-PA | 1320 | hgo-RA | 1..478 | 17..494 | 2390 | 100 | Plus |
CG4779-PA | 1320 | hgo-RA | 483..570 | 499..586 | 365 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hgo-RA | 1445 | CG4779-RA | 39..610 | 15..586 | 2770 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11136804..11137075 | 30..301 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 11137142..11137330 | 300..488 | 945 | 100 | Plus |
2L | 23513712 | 2L | 11137406..11137493 | 499..586 | 395 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:54:05 has no hits.
BO13204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:47 Download gff for
BO13204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-PA | 1..570 | 17..586 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:27 Download gff for
BO13204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4779-PA | 1..570 | 17..586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:55:27 Download gff for
BO13204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 36..610 | 9..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:37 Download gff for
BO13204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 36..610 | 9..586 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:37 Download gff for
BO13204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11137144..11137330 | 302..488 | 100 | -> | Plus |
2L | 11137396..11137493 | 489..586 | 94 | | Plus |
2L | 11136806..11137075 | 32..301 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:55:27 Download gff for
BO13204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11137396..11137493 | 489..586 | 94 | | Plus |
arm_2L | 11136806..11137075 | 32..301 | 100 | -> | Plus |
arm_2L | 11137144..11137330 | 302..488 | 100 | -> | Plus |
BO13204.complete Sequence
1351 bp assembled on 2008-08-14
GenBank Submission: FJ638714
> BO13204.complete
GAAGTTATCAGTCGACATGTCGGAATACAAGTACCTCTCGGGTTTTGGGT
CTCACTTCTCATCTGAGGATGAGCGGTATCCCAACTCCTTGCCAGTGGGA
CAGAACTCACCTCAAGTGTGCCCATACAAACTCTATGCGGAGCAGCTATC
CGGAAGTGCCTTCACTGCGCCCAGGACGGAGAATATGCGCACGTGGCTCT
ACAGGAAGTTGCCCTCTGCCGCGCACCTTCCATTCCAGCCCTTCAAGGGA
GCTGAGTACTTTAGTCAAAACTGGGATGAGCAGCCACCGAATCCAAACCA
GCTTCGTTGGAAACCCTTTGACTTGCCTCCAAAGGATGGAAAAAATGTGA
ACTTTGTGGAAGGCTTGCACACGGTTTGTGGAGCGGGAGATCCCAGATCT
CGTCATGGTCTTGCCATACACATTTACTCCTGCAATGGCTCGATGGATAA
CTCAGCTTTCTATAACAGCGATGGTGATTTTTTGATTGTGCCCCAGCAAG
GAGTCTTAGATATAACCACAGAGTTTGGAAGGATGTCTGTAGCCCCAAAT
GAGATCTGCGTTATACCACAGGGAATACGATTTGCTGTAAATGTGGATTC
TCCTTCTAGGGGTTATATCCTGGAGGTCTATGATGATCACTTCGTTTTGC
CGGACTTGGGTCCCATTGGTGCTAATGGTTTGGCCAATCCCAGAGATTTC
GAGACTCCTGTGGCGTGGTTCGATGATCGGGATGTAAAGGACTTCCAGGT
AATTTCGAAATTCCAAGGTCGCCTCTTCGTGGCCAAGCAAAATCACACCG
TCTTCGATGTGGTGGCTTGGCATGGTAACTATGTGCCCTTCAAGTACGAT
CTGTCCAAGTTCATGGTGATTAACTCGGTTAGCTTTGACCATTGTGACCC
CAGCATTTTTACCGTGCTCACTTGTCCCAGCTTACGAGCTGGAACGGCCA
TAGCAGACTTTGTGATCTTTCCACCCCGTTGGTCAGTGCAGGAGCACACC
TTCAGGCCACCCTATTACCACAGGAACTGCATGAGCGAGTTCATGGGCCT
AATTCTGGGCAAGTATGAGGCCAAGGAGGATGGCTTTGCGGCAGGAGGAG
CGACCCTCCATTCCATGATGACGCCACATGGTCCAGATGTCAAGTGCTTT
GAAGGTGCCTCGAATGCCAAACTGGTGCCGGAACGCGTGGCCGAGGGAAC
TCAGGCCTTCATGTTCGAATCCTCTCTAAGTTTGGCCGTTACCAAGTGGG
GCGAGGAGACCTGCCAAAAACTGGATGCCGCATATTACGAATGCTGGCAG
GCGCTGAAGAACAACTTTCAAATAACTAAAAATGCAAGCTTTCTAGACCA
T
BO13204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hgo-RA | 1320 | CG4779-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hgo-RA | 1445 | CG4779-RA | 38..1357 | 14..1333 | 6600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11137762..11138049 | 736..1023 | 1425 | 99.7 | Plus |
2L | 23513712 | 2L | 11136804..11137075 | 30..301 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 11137142..11137330 | 300..488 | 945 | 100 | Plus |
2L | 23513712 | 2L | 11138104..11138286 | 1023..1205 | 915 | 100 | Plus |
2L | 23513712 | 2L | 11137568..11137701 | 607..740 | 670 | 100 | Plus |
2L | 23513712 | 2L | 11138347..11138477 | 1203..1333 | 655 | 100 | Plus |
2L | 23513712 | 2L | 11137395..11137517 | 488..610 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:17:49 has no hits.
BO13204.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:00 Download gff for
BO13204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 34..1359 | 9..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:29 Download gff for
BO13204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 41..1357 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:08 Download gff for
BO13204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 39..1355 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:50 Download gff for
BO13204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hgo-RA | 41..1357 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:50 Download gff for
BO13204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11138104..11138285 | 1023..1204 | 100 | -> | Plus |
2L | 11138349..11138477 | 1205..1335 | 98 | | Plus |
2L | 11137767..11138048 | 741..1022 | 100 | -> | Plus |
2L | 11136806..11137075 | 32..301 | 100 | -> | Plus |
2L | 11137144..11137330 | 302..488 | 100 | -> | Plus |
2L | 11137396..11137516 | 489..609 | 100 | -> | Plus |
2L | 11137571..11137701 | 610..740 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:29 Download gff for
BO13204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11137571..11137701 | 610..740 | 100 | -> | Plus |
arm_2L | 11137767..11138048 | 741..1022 | 100 | -> | Plus |
arm_2L | 11138104..11138285 | 1023..1204 | 100 | -> | Plus |
arm_2L | 11138349..11138477 | 1205..1335 | 98 | | Plus |
arm_2L | 11136806..11137075 | 32..301 | 100 | -> | Plus |
arm_2L | 11137144..11137330 | 302..488 | 100 | -> | Plus |
arm_2L | 11137396..11137516 | 489..609 | 100 | -> | Plus |
BO13204.pep Sequence
Translation from 16 to 1351
> BO13204.pep
MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT
APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP
FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN
SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY
ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ
GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV
LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY
EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF
ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKNASFLDH
BO13204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hgo-PA | 439 | CG4779-PA | 1..439 | 1..439 | 2398 | 100 | Plus |