Clone BO13204 Report

Search the DGRC for BO13204

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:4
Vector:pDNR-Dual
Associated Gene/Transcripthgo-RA
Protein status:BO13204.pep: Imported from assembly
Sequenced Size:1351

Clone Sequence Records

BO13204.3prime Sequence

653 bp (537 high quality bases) assembled on 2006-05-08

> BO13204.3prime
ATGGTCTAGAAAGCTTGCATTTTTAGTTATTTGAAAGTTGTTCTTCAGCG
CCTGCCAGCATTCGTAATATGCGGCATCCAGTTTTTGGCAGGTCTCCTCG
CCCCACTTGGTAACGGCCAAACTTAGAGAGGATTCGAACATGAAGGCCTG
AGTTCCCTCGGCCACGCGTTCCGGCACCAGTTTGGCATTCGAGGCACCTT
CAAAGCACTTGACATCTGGACCATGTGGCGTCATCATGGAATGGAGGGTC
GCTCCTCCTGCCGCAAAGCCATCCTCCTTGGCCTCATACTTGCCCAGAAT
TAGGCCCATGAACTCGCTCATGCAGTTCCTGTGGTAATAGGGTGGCCTGA
AGGTGTGCTCCTGCACTGACCAACGGGGTGGAAAGATCACAAAGTCTGCT
ATGGCCGTTCCAGCTCGTAAGCTGGGACAAGTGAGCACGGTAAAAAATGC
TTGGGGTCACAATGGTCAAAGCTAACCGAGTTAATCACCATGAACTTGGA
CAGATTCGTACTTGAAGGGCACATTAGTTACCATGCCAAGCCACCACATC
GAAAGACGGTGTGATTTTTGCTTGGCCACGAAGAGGCGACCTTGGAATTT
CGAAATTACCTGGAAGTCCTTTTCATCCCGATCCTCGAACCACGCCACAG
GAG

BO13204.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4779-PA 1320 hgo-RA 890..1317 446..19 2140 100 Minus
CG4779-PA 1320 hgo-RA 689..776 653..566 390 97.7 Minus
CG4779-PA 1320 hgo-RA 833..886 505..452 270 100 Minus
CG4779-PA 1320 hgo-RA 787..815 553..525 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-RA 1445 CG4779-RA 729..1357 653..19 2995 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11137761..11138049 623..329 1160 97.6 Minus
2L 23513712 2L 11138104..11138286 329..147 915 100 Minus
2L 23513712 2L 11138347..11138477 149..19 655 100 Minus
Blast to na_te.dros performed on 2015-01-31 11:52:11 has no hits.

BO13204.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:46 Download gff for BO13204.3prime
Subject Subject Range Query Range Percent Splice Strand
hgo-PA 689..1320 18..653 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:26 Download gff for BO13204.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4779-PA 689..1320 18..653 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:53:28 Download gff for BO13204.3prime
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 729..1361 13..653 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:59:17 Download gff for BO13204.3prime
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 729..1361 13..653 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:59:17 Download gff for BO13204.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11137666..11137701 618..653 94 -> Minus
2L 11137767..11138048 330..617 97 -> Minus
2L 11138104..11138285 148..329 100 -> Minus
2L 11138349..11138479 14..147 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:53:28 Download gff for BO13204.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11137666..11137701 618..653 94 -> Minus
arm_2L 11137767..11138048 330..617 97 -> Minus
arm_2L 11138104..11138285 148..329 100 -> Minus
arm_2L 11138349..11138479 14..147 97 -> Minus

BO13204.5prime Sequence

586 bp (563 high quality bases) assembled on 2006-05-08

> BO13204.5prime
GAAGTTATCAGTCTACATGTCGGAATACAAGTACCTCTCGGGTTTTGGGT
CTCACTTCTCATCTGAGGATGAGCGGTATCCCAACTCCTTGCCAGTGGGA
CAGAACTCACCTCAAGTGTGCCCATACAAACTCTATGCGGAGCAGCTATC
CGGAAGTGCCTTCACTGCGCCCAGGACGGAGAATATGCGCACGTGGCTCT
ACAGGAAGTTGCCCTCTGCCGCGCACCTTCCATTCCAGCCCTTCAAGGGA
GCTGAGTACTTTAGTCAAAACTGGGATGAGCAGCCACCGAATCCAAACCA
GCTTCGTTGGAAACCCTTTGACTTGCCTCCAAAGGATGGAAAAAATGTGA
ACTTTGTGGAAGGCTTGCACACGGTTTGTGGAGCGGGAGATCCCAGATCT
CGTCATGGTCTTGCCATACACATTTACTCCTGCAATGGCTCGATGGATAA
CTCAGCTTTCTATAACAGCGATGGTGATTTTTTGATTGTGCCCCCAGCAG
GAGTCTTAGATATAACCACAGAGTTTGGAAGGATGTCTGTAACCCCAATT
GAGATCTGCGTTATACCACAGGGAATACAATTTGCT

BO13204.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4779-PA 1320 hgo-RA 1..478 17..494 2390 100 Plus
CG4779-PA 1320 hgo-RA 483..570 499..586 365 96.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-RA 1445 CG4779-RA 39..610 15..586 2770 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11136804..11137075 30..301 1360 100 Plus
2L 23513712 2L 11137142..11137330 300..488 945 100 Plus
2L 23513712 2L 11137406..11137493 499..586 395 96.6 Plus
Blast to na_te.dros performed on 2015-02-02 09:54:05 has no hits.

BO13204.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:47 Download gff for BO13204.5prime
Subject Subject Range Query Range Percent Splice Strand
hgo-PA 1..570 17..586 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:27 Download gff for BO13204.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4779-PA 1..570 17..586 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:55:27 Download gff for BO13204.5prime
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 36..610 9..586 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:37 Download gff for BO13204.5prime
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 36..610 9..586 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:37 Download gff for BO13204.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11137144..11137330 302..488 100 -> Plus
2L 11137396..11137493 489..586 94   Plus
2L 11136806..11137075 32..301 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:55:27 Download gff for BO13204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11137396..11137493 489..586 94   Plus
arm_2L 11136806..11137075 32..301 100 -> Plus
arm_2L 11137144..11137330 302..488 100 -> Plus

BO13204.complete Sequence

1351 bp assembled on 2008-08-14

GenBank Submission: FJ638714

> BO13204.complete
GAAGTTATCAGTCGACATGTCGGAATACAAGTACCTCTCGGGTTTTGGGT
CTCACTTCTCATCTGAGGATGAGCGGTATCCCAACTCCTTGCCAGTGGGA
CAGAACTCACCTCAAGTGTGCCCATACAAACTCTATGCGGAGCAGCTATC
CGGAAGTGCCTTCACTGCGCCCAGGACGGAGAATATGCGCACGTGGCTCT
ACAGGAAGTTGCCCTCTGCCGCGCACCTTCCATTCCAGCCCTTCAAGGGA
GCTGAGTACTTTAGTCAAAACTGGGATGAGCAGCCACCGAATCCAAACCA
GCTTCGTTGGAAACCCTTTGACTTGCCTCCAAAGGATGGAAAAAATGTGA
ACTTTGTGGAAGGCTTGCACACGGTTTGTGGAGCGGGAGATCCCAGATCT
CGTCATGGTCTTGCCATACACATTTACTCCTGCAATGGCTCGATGGATAA
CTCAGCTTTCTATAACAGCGATGGTGATTTTTTGATTGTGCCCCAGCAAG
GAGTCTTAGATATAACCACAGAGTTTGGAAGGATGTCTGTAGCCCCAAAT
GAGATCTGCGTTATACCACAGGGAATACGATTTGCTGTAAATGTGGATTC
TCCTTCTAGGGGTTATATCCTGGAGGTCTATGATGATCACTTCGTTTTGC
CGGACTTGGGTCCCATTGGTGCTAATGGTTTGGCCAATCCCAGAGATTTC
GAGACTCCTGTGGCGTGGTTCGATGATCGGGATGTAAAGGACTTCCAGGT
AATTTCGAAATTCCAAGGTCGCCTCTTCGTGGCCAAGCAAAATCACACCG
TCTTCGATGTGGTGGCTTGGCATGGTAACTATGTGCCCTTCAAGTACGAT
CTGTCCAAGTTCATGGTGATTAACTCGGTTAGCTTTGACCATTGTGACCC
CAGCATTTTTACCGTGCTCACTTGTCCCAGCTTACGAGCTGGAACGGCCA
TAGCAGACTTTGTGATCTTTCCACCCCGTTGGTCAGTGCAGGAGCACACC
TTCAGGCCACCCTATTACCACAGGAACTGCATGAGCGAGTTCATGGGCCT
AATTCTGGGCAAGTATGAGGCCAAGGAGGATGGCTTTGCGGCAGGAGGAG
CGACCCTCCATTCCATGATGACGCCACATGGTCCAGATGTCAAGTGCTTT
GAAGGTGCCTCGAATGCCAAACTGGTGCCGGAACGCGTGGCCGAGGGAAC
TCAGGCCTTCATGTTCGAATCCTCTCTAAGTTTGGCCGTTACCAAGTGGG
GCGAGGAGACCTGCCAAAAACTGGATGCCGCATATTACGAATGCTGGCAG
GCGCTGAAGAACAACTTTCAAATAACTAAAAATGCAAGCTTTCTAGACCA
T

BO13204.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-RA 1320 CG4779-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-RA 1445 CG4779-RA 38..1357 14..1333 6600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11137762..11138049 736..1023 1425 99.7 Plus
2L 23513712 2L 11136804..11137075 30..301 1360 100 Plus
2L 23513712 2L 11137142..11137330 300..488 945 100 Plus
2L 23513712 2L 11138104..11138286 1023..1205 915 100 Plus
2L 23513712 2L 11137568..11137701 607..740 670 100 Plus
2L 23513712 2L 11138347..11138477 1203..1333 655 100 Plus
2L 23513712 2L 11137395..11137517 488..610 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:17:49 has no hits.

BO13204.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:00 Download gff for BO13204.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 34..1359 9..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:29 Download gff for BO13204.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 41..1357 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:08 Download gff for BO13204.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 39..1355 17..1335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:50 Download gff for BO13204.complete
Subject Subject Range Query Range Percent Splice Strand
hgo-RA 41..1357 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:50 Download gff for BO13204.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11138104..11138285 1023..1204 100 -> Plus
2L 11138349..11138477 1205..1335 98   Plus
2L 11137767..11138048 741..1022 100 -> Plus
2L 11136806..11137075 32..301 100 -> Plus
2L 11137144..11137330 302..488 100 -> Plus
2L 11137396..11137516 489..609 100 -> Plus
2L 11137571..11137701 610..740 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:29 Download gff for BO13204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11137571..11137701 610..740 100 -> Plus
arm_2L 11137767..11138048 741..1022 100 -> Plus
arm_2L 11138104..11138285 1023..1204 100 -> Plus
arm_2L 11138349..11138477 1205..1335 98   Plus
arm_2L 11136806..11137075 32..301 100 -> Plus
arm_2L 11137144..11137330 302..488 100 -> Plus
arm_2L 11137396..11137516 489..609 100 -> Plus

BO13204.pep Sequence

Translation from 16 to 1351

> BO13204.pep
MSEYKYLSGFGSHFSSEDERYPNSLPVGQNSPQVCPYKLYAEQLSGSAFT
APRTENMRTWLYRKLPSAAHLPFQPFKGAEYFSQNWDEQPPNPNQLRWKP
FDLPPKDGKNVNFVEGLHTVCGAGDPRSRHGLAIHIYSCNGSMDNSAFYN
SDGDFLIVPQQGVLDITTEFGRMSVAPNEICVIPQGIRFAVNVDSPSRGY
ILEVYDDHFVLPDLGPIGANGLANPRDFETPVAWFDDRDVKDFQVISKFQ
GRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSFDHCDPSIFTV
LTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKY
EAKEDGFAAGGATLHSMMTPHGPDVKCFEGASNAKLVPERVAEGTQAFMF
ESSLSLAVTKWGEETCQKLDAAYYECWQALKNNFQITKNASFLDH

BO13204.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
hgo-PA 439 CG4779-PA 1..439 1..439 2398 100 Plus