Clone BO13205 Report

Search the DGRC for BO13205

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRab-RP3-RA
Protein status:BO13205.pep: Imported from assembly
Sequenced Size:691

Clone Sequence Records

BO13205.3prime Sequence

681 bp (597 high quality bases) assembled on 2006-05-08

> BO13205.3prime
ATGGTCTAGAAAGCTTGCGGTGAGATTGCATGAGCTGCTGCAACTCTTTA
AAGGCTTTCCCTGGCCCAAGGTGATGGTGTTTTCTGGCACCTCCTCCACA
TTGTTGGCATCGTGTTGGCGTTTAAGTTCGTTGGCCAGGCAGCGGAAGGC
GTCCTCCACGTTCATGTTCTCCTTGGCGGAGGTCTCCATCACGAACAGGA
TCTCAGGTATATATTGACACATCTGGCGCGCCTCTTCAAAGTCCACCTCG
CGCTGCTCCTCCAAATCGCACTTGTTGCCCACGAGGATTATCAAAACATT
AGAAGCAGTGTATCTACGCACTTCTTCGATCCATTTTTGCAGATTGGAAA
AGGAAGACCGCTTGGTGATGTCGTAAACAATTAAGACCCCGTTGGCCGAG
CGATAATAGCTCTGCGTAATAGTGCGAAACCTCTCCTGACCAGCAGTGTC
CCAGATTTGTAGCTTGATTTGTTTGCCCTCCACGGCGATGGTCTTCATCG
AAAAGTCCACTCCGATGGTGTTCCCATGTCGCTCTATGTATTTCCCTGTC
TTAAATCTGTCCACTATGCAGGTCTTCCCCGTCCCGCAGTCACCAATGAG
GACGATCTTGAACAGGAAGTCGAAGTGTTCCTCGTTTGGCAGTGCCATTC
ATGTCTGAGGATTGCGGGCGGTCATGTCAAC

BO13205.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7062-PA 660 Rab-RP3-RA 28..657 648..19 3125 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-RB 1062 CG7062-RB 121..777 675..19 3225 99.5 Minus
Rab19-RA 1033 CG7062-RA 92..748 675..19 3225 99.5 Minus
Rab30-RD 1305 CG9100-RD 548..673 520..395 225 78.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8297814..8298071 378..121 1290 100 Minus
3L 28110227 3L 8297260..8297472 675..463 1005 98.1 Minus
3L 28110227 3L 8298120..8298221 120..19 510 100 Minus
3L 28110227 3L 8297533..8297619 464..378 435 100 Minus
2L 23513712 2L 7031867..7031992 395..520 225 78.6 Plus
Blast to na_te.dros performed on 2015-02-12 18:55:21 has no hits.

BO13205.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:48 Download gff for BO13205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7062-PA 1..660 18..675 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:28 Download gff for BO13205.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7062-PA 1..660 18..675 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:00 Download gff for BO13205.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 92..748 19..675 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:17 Download gff for BO13205.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 92..748 19..675 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:17 Download gff for BO13205.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8297260..8297472 463..675 98 -> Minus
3L 8297535..8297619 378..462 100 -> Minus
3L 8297815..8298071 121..377 100 -> Minus
3L 8298120..8298221 19..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:00 Download gff for BO13205.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8290360..8290572 463..675 98 -> Minus
arm_3L 8290635..8290719 378..462 100 -> Minus
arm_3L 8290915..8291171 121..377 100 -> Minus
arm_3L 8291220..8291321 19..120 100   Minus

BO13205.5prime Sequence

689 bp (688 high quality bases) assembled on 2006-05-08

> BO13205.5prime
GAAGTTATCACTCTACATGACCGCCCGCAATCCTCAGACACTGATGGCAC
TGCCAAACGAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGT
GACTGCGGGACGGGGAAGACCTGCATAGTGGACAGATTTAAGACAGGGAA
CTACATAGAGCGACATGGGAACACCATCGGAGTGGACTTTTCGATGAAGA
CCATCGCCGTGGAGGGCAAACAAATCAAGCTACAAATCTGGGACACTGCT
GGTCAGGAGAGGTTTCGCACTATTACGCAGAGCTATTATCGCTCGGCCAA
CGGGGTCTTAATTGTTTACGACATCACCAAGCGGTCTTCCTTTTCCAATC
TGCAAAAATGGATCGAAGAAGTGCGTAGATACACTGCTTCTAATGTTTTG
ATAATCCTCGTGGGCAACAAGTGCGATTTGGAGGAGCAGCGCGAGGTGGA
CTTTGAAGAGGCGCGCCAGATGTGTCAATATATACCTGAGATCCTGTTCG
TGATGGAGACCTCCGCCAAGGAGAACATGAACGTGGAGGACGCCTTCCGC
TGCCTGGCCAACGAACTTAAACGCCAACACGATGCCAACAATGTGGAGGA
GGTGCCAGAAAACACCATCACCTTGGGCCAGGGAAAGCCTTTAAAGAGTT
GCAGCAGCTCATGCAATCTCACCGCAAGCTTTCTAGACC

BO13205.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7062-PA 660 Rab-RP3-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-RB 1062 CG7062-RB 121..777 17..673 3285 100 Plus
Rab19-RA 1033 CG7062-RA 92..748 17..673 3285 100 Plus
Rab30-RD 1305 CG9100-RD 548..673 172..297 225 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8297814..8298071 314..571 1290 100 Plus
3L 28110227 3L 8297260..8297472 17..229 1065 100 Plus
3L 28110227 3L 8298120..8298221 572..673 510 100 Plus
3L 28110227 3L 8297533..8297619 228..314 435 100 Plus
2L 23513712 2L 7031867..7031992 297..172 225 78.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:22:35 has no hits.

BO13205.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:49 Download gff for BO13205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7062-PA 1..660 17..674 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:30 Download gff for BO13205.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7062-PA 1..660 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:57 Download gff for BO13205.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 92..748 17..673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:34 Download gff for BO13205.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 92..748 17..673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:34 Download gff for BO13205.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8297260..8297472 17..229 100 -> Plus
3L 8297535..8297619 230..314 100 -> Plus
3L 8297815..8298071 315..571 100 -> Plus
3L 8298120..8298221 572..673 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:57 Download gff for BO13205.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8290360..8290572 17..229 100 -> Plus
arm_3L 8290635..8290719 230..314 100 -> Plus
arm_3L 8290915..8291171 315..571 100 -> Plus
arm_3L 8291220..8291321 572..673 100   Plus

BO13205.complete Sequence

691 bp assembled on 2008-08-14

GenBank Submission: FJ632714

> BO13205.complete
GAAGTTATCAGTCGACATGACCGCCCGCAATCCTCAGACACTGATGGCAC
TGCCAAACGAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGT
GACTGCGGGACGGGGAAGACCTGCATAGTGGACAGATTTAAGACAGGGAA
CTACATAGAGCGACATGGGAACACCATCGGAGTGGACTTTTCGATGAAGA
CCATCGCCGTGGAGGGCAAACAAATCAAGCTACAAATCTGGGACACTGCT
GGTCAGGAGAGGTTTCGCACTATTACGCAGAGCTATTATCGCTCGGCCAA
CGGGGTCTTAATTGTTTACGACATCACCAAGCGGTCTTCCTTTTCCAATC
TGCAAAAATGGATCGAAGAAGTGCGTAGATACACTGCTTCTAATGTTTTG
ATAATCCTCGTGGGCAACAAGTGCGATTTGGAGGAGCAGCGCGAGGTGGA
CTTTGAAGAGGCGCGCCAGATGTGTCAATATATACCTGAGATCCTGTTCG
TGATGGAGACCTCCGCCAAGGAGAACATGAACGTGGAGGACGCCTTCCGC
TGCCTGGCCAACGAACTTAAACGCCAACACGATGCCAACAATGTGGAGGA
GGTGCCAGAAAACACCATCACCTTGGGCCAGGGAAAGCCTTTAAAGAGTT
GCAGCAGCTCATGCAATCTCACCGCAAGCTTTCTAGACCAT

BO13205.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-RB 660 CG7062-PB 1..657 17..673 3285 100 Plus
Rab19-RA 660 CG7062-PA 1..657 17..673 3285 100 Plus
Rab30-RD 672 CG9100-PD 114..239 172..297 225 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-RB 1062 CG7062-RB 121..777 17..673 3285 100 Plus
Rab19-RA 1033 CG7062-RA 92..748 17..673 3285 100 Plus
Rab30-RD 1305 CG9100-RD 548..673 172..297 225 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8297814..8298071 314..571 1290 100 Plus
3L 28110227 3L 8297260..8297472 17..229 1065 100 Plus
3L 28110227 3L 8298120..8298221 572..673 510 100 Plus
3L 28110227 3L 8297533..8297619 228..314 435 100 Plus
2L 23513712 2L 7031867..7031992 297..172 225 78.6 Minus
Blast to na_te.dros performed on 2014-11-27 11:01:13 has no hits.

BO13205.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:13 Download gff for BO13205.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 89..745 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:11 Download gff for BO13205.complete
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 92..748 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:20 Download gff for BO13205.complete
Subject Subject Range Query Range Percent Splice Strand
Rab-RP3-RA 89..745 17..675 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:48 Download gff for BO13205.complete
Subject Subject Range Query Range Percent Splice Strand
Rab19-RA 92..748 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:48 Download gff for BO13205.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8297260..8297472 17..229 100 -> Plus
3L 8297535..8297619 230..314 100 -> Plus
3L 8297815..8298071 315..571 100 -> Plus
3L 8298120..8298221 572..675 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:11 Download gff for BO13205.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8290360..8290572 17..229 100 -> Plus
arm_3L 8290635..8290719 230..314 100 -> Plus
arm_3L 8290915..8291171 315..571 100 -> Plus
arm_3L 8291220..8291321 572..675 98   Plus

BO13205.pep Sequence

Translation from 16 to 691

> BO13205.pep
MTARNPQTLMALPNEEHFDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERH
GNTIGVDFSMKTIAVEGKQIKLQIWDTAGQERFRTITQSYYRSANGVLIV
YDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFEEAR
QMCQYIPEILFVMETSAKENMNVEDAFRCLANELKRQHDANNVEEVPENT
ITLGQGKPLKSCSSSCNLTASFLDH

BO13205.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rab19-PB 219 CG7062-PP3-RB 1..219 1..219 1143 100 Plus
Rab19-PA 219 CG7062-PA 1..219 1..219 1143 100 Plus
Rab1-PA 205 CG3320-PA 8..204 18..216 478 46.2 Plus
Rab8-PC 207 CG8287-PC 5..181 18..192 441 48 Plus
Rab8-PA 207 CG8287-PA 5..181 18..192 441 48 Plus