Clone Sequence Records
BO13205.3prime Sequence
681 bp (597 high quality bases) assembled on 2006-05-08
> BO13205.3prime
ATGGTCTAGAAAGCTTGCGGTGAGATTGCATGAGCTGCTGCAACTCTTTA
AAGGCTTTCCCTGGCCCAAGGTGATGGTGTTTTCTGGCACCTCCTCCACA
TTGTTGGCATCGTGTTGGCGTTTAAGTTCGTTGGCCAGGCAGCGGAAGGC
GTCCTCCACGTTCATGTTCTCCTTGGCGGAGGTCTCCATCACGAACAGGA
TCTCAGGTATATATTGACACATCTGGCGCGCCTCTTCAAAGTCCACCTCG
CGCTGCTCCTCCAAATCGCACTTGTTGCCCACGAGGATTATCAAAACATT
AGAAGCAGTGTATCTACGCACTTCTTCGATCCATTTTTGCAGATTGGAAA
AGGAAGACCGCTTGGTGATGTCGTAAACAATTAAGACCCCGTTGGCCGAG
CGATAATAGCTCTGCGTAATAGTGCGAAACCTCTCCTGACCAGCAGTGTC
CCAGATTTGTAGCTTGATTTGTTTGCCCTCCACGGCGATGGTCTTCATCG
AAAAGTCCACTCCGATGGTGTTCCCATGTCGCTCTATGTATTTCCCTGTC
TTAAATCTGTCCACTATGCAGGTCTTCCCCGTCCCGCAGTCACCAATGAG
GACGATCTTGAACAGGAAGTCGAAGTGTTCCTCGTTTGGCAGTGCCATTC
ATGTCTGAGGATTGCGGGCGGTCATGTCAAC
BO13205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7062-PA | 660 | Rab-RP3-RA | 28..657 | 648..19 | 3125 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab19-RB | 1062 | CG7062-RB | 121..777 | 675..19 | 3225 | 99.5 | Minus |
Rab19-RA | 1033 | CG7062-RA | 92..748 | 675..19 | 3225 | 99.5 | Minus |
Rab30-RD | 1305 | CG9100-RD | 548..673 | 520..395 | 225 | 78.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8297814..8298071 | 378..121 | 1290 | 100 | Minus |
3L | 28110227 | 3L | 8297260..8297472 | 675..463 | 1005 | 98.1 | Minus |
3L | 28110227 | 3L | 8298120..8298221 | 120..19 | 510 | 100 | Minus |
3L | 28110227 | 3L | 8297533..8297619 | 464..378 | 435 | 100 | Minus |
2L | 23513712 | 2L | 7031867..7031992 | 395..520 | 225 | 78.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:55:21 has no hits.
BO13205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:48 Download gff for
BO13205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7062-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:28 Download gff for
BO13205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7062-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:58:00 Download gff for
BO13205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab19-RA | 92..748 | 19..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:17 Download gff for
BO13205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab19-RA | 92..748 | 19..675 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:17 Download gff for
BO13205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8297260..8297472 | 463..675 | 98 | -> | Minus |
3L | 8297535..8297619 | 378..462 | 100 | -> | Minus |
3L | 8297815..8298071 | 121..377 | 100 | -> | Minus |
3L | 8298120..8298221 | 19..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:58:00 Download gff for
BO13205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8290360..8290572 | 463..675 | 98 | -> | Minus |
arm_3L | 8290635..8290719 | 378..462 | 100 | -> | Minus |
arm_3L | 8290915..8291171 | 121..377 | 100 | -> | Minus |
arm_3L | 8291220..8291321 | 19..120 | 100 | | Minus |
BO13205.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-05-08
> BO13205.5prime
GAAGTTATCACTCTACATGACCGCCCGCAATCCTCAGACACTGATGGCAC
TGCCAAACGAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGT
GACTGCGGGACGGGGAAGACCTGCATAGTGGACAGATTTAAGACAGGGAA
CTACATAGAGCGACATGGGAACACCATCGGAGTGGACTTTTCGATGAAGA
CCATCGCCGTGGAGGGCAAACAAATCAAGCTACAAATCTGGGACACTGCT
GGTCAGGAGAGGTTTCGCACTATTACGCAGAGCTATTATCGCTCGGCCAA
CGGGGTCTTAATTGTTTACGACATCACCAAGCGGTCTTCCTTTTCCAATC
TGCAAAAATGGATCGAAGAAGTGCGTAGATACACTGCTTCTAATGTTTTG
ATAATCCTCGTGGGCAACAAGTGCGATTTGGAGGAGCAGCGCGAGGTGGA
CTTTGAAGAGGCGCGCCAGATGTGTCAATATATACCTGAGATCCTGTTCG
TGATGGAGACCTCCGCCAAGGAGAACATGAACGTGGAGGACGCCTTCCGC
TGCCTGGCCAACGAACTTAAACGCCAACACGATGCCAACAATGTGGAGGA
GGTGCCAGAAAACACCATCACCTTGGGCCAGGGAAAGCCTTTAAAGAGTT
GCAGCAGCTCATGCAATCTCACCGCAAGCTTTCTAGACC
BO13205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7062-PA | 660 | Rab-RP3-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab19-RB | 1062 | CG7062-RB | 121..777 | 17..673 | 3285 | 100 | Plus |
Rab19-RA | 1033 | CG7062-RA | 92..748 | 17..673 | 3285 | 100 | Plus |
Rab30-RD | 1305 | CG9100-RD | 548..673 | 172..297 | 225 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8297814..8298071 | 314..571 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 8297260..8297472 | 17..229 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 8298120..8298221 | 572..673 | 510 | 100 | Plus |
3L | 28110227 | 3L | 8297533..8297619 | 228..314 | 435 | 100 | Plus |
2L | 23513712 | 2L | 7031867..7031992 | 297..172 | 225 | 78.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:22:35 has no hits.
BO13205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:49 Download gff for
BO13205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7062-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:30 Download gff for
BO13205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7062-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:57 Download gff for
BO13205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab19-RA | 92..748 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:34 Download gff for
BO13205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab19-RA | 92..748 | 17..673 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:34 Download gff for
BO13205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8297260..8297472 | 17..229 | 100 | -> | Plus |
3L | 8297535..8297619 | 230..314 | 100 | -> | Plus |
3L | 8297815..8298071 | 315..571 | 100 | -> | Plus |
3L | 8298120..8298221 | 572..673 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:57 Download gff for
BO13205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8290360..8290572 | 17..229 | 100 | -> | Plus |
arm_3L | 8290635..8290719 | 230..314 | 100 | -> | Plus |
arm_3L | 8290915..8291171 | 315..571 | 100 | -> | Plus |
arm_3L | 8291220..8291321 | 572..673 | 100 | | Plus |
BO13205.complete Sequence
691 bp assembled on 2008-08-14
GenBank Submission: FJ632714
> BO13205.complete
GAAGTTATCAGTCGACATGACCGCCCGCAATCCTCAGACACTGATGGCAC
TGCCAAACGAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGT
GACTGCGGGACGGGGAAGACCTGCATAGTGGACAGATTTAAGACAGGGAA
CTACATAGAGCGACATGGGAACACCATCGGAGTGGACTTTTCGATGAAGA
CCATCGCCGTGGAGGGCAAACAAATCAAGCTACAAATCTGGGACACTGCT
GGTCAGGAGAGGTTTCGCACTATTACGCAGAGCTATTATCGCTCGGCCAA
CGGGGTCTTAATTGTTTACGACATCACCAAGCGGTCTTCCTTTTCCAATC
TGCAAAAATGGATCGAAGAAGTGCGTAGATACACTGCTTCTAATGTTTTG
ATAATCCTCGTGGGCAACAAGTGCGATTTGGAGGAGCAGCGCGAGGTGGA
CTTTGAAGAGGCGCGCCAGATGTGTCAATATATACCTGAGATCCTGTTCG
TGATGGAGACCTCCGCCAAGGAGAACATGAACGTGGAGGACGCCTTCCGC
TGCCTGGCCAACGAACTTAAACGCCAACACGATGCCAACAATGTGGAGGA
GGTGCCAGAAAACACCATCACCTTGGGCCAGGGAAAGCCTTTAAAGAGTT
GCAGCAGCTCATGCAATCTCACCGCAAGCTTTCTAGACCAT
BO13205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab19-RB | 660 | CG7062-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
Rab19-RA | 660 | CG7062-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Rab30-RD | 672 | CG9100-PD | 114..239 | 172..297 | 225 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab19-RB | 1062 | CG7062-RB | 121..777 | 17..673 | 3285 | 100 | Plus |
Rab19-RA | 1033 | CG7062-RA | 92..748 | 17..673 | 3285 | 100 | Plus |
Rab30-RD | 1305 | CG9100-RD | 548..673 | 172..297 | 225 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8297814..8298071 | 314..571 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 8297260..8297472 | 17..229 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 8298120..8298221 | 572..673 | 510 | 100 | Plus |
3L | 28110227 | 3L | 8297533..8297619 | 228..314 | 435 | 100 | Plus |
2L | 23513712 | 2L | 7031867..7031992 | 297..172 | 225 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:01:13 has no hits.
BO13205.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:13 Download gff for
BO13205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP3-RA | 89..745 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:11 Download gff for
BO13205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab19-RA | 92..748 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:20 Download gff for
BO13205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP3-RA | 89..745 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:48 Download gff for
BO13205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab19-RA | 92..748 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:48 Download gff for
BO13205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8297260..8297472 | 17..229 | 100 | -> | Plus |
3L | 8297535..8297619 | 230..314 | 100 | -> | Plus |
3L | 8297815..8298071 | 315..571 | 100 | -> | Plus |
3L | 8298120..8298221 | 572..675 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:11 Download gff for
BO13205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8290360..8290572 | 17..229 | 100 | -> | Plus |
arm_3L | 8290635..8290719 | 230..314 | 100 | -> | Plus |
arm_3L | 8290915..8291171 | 315..571 | 100 | -> | Plus |
arm_3L | 8291220..8291321 | 572..675 | 98 | | Plus |
BO13205.pep Sequence
Translation from 16 to 691
> BO13205.pep
MTARNPQTLMALPNEEHFDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERH
GNTIGVDFSMKTIAVEGKQIKLQIWDTAGQERFRTITQSYYRSANGVLIV
YDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFEEAR
QMCQYIPEILFVMETSAKENMNVEDAFRCLANELKRQHDANNVEEVPENT
ITLGQGKPLKSCSSSCNLTASFLDH
BO13205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab19-PB | 219 | CG7062-PP3-RB | 1..219 | 1..219 | 1143 | 100 | Plus |
Rab19-PA | 219 | CG7062-PA | 1..219 | 1..219 | 1143 | 100 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..204 | 18..216 | 478 | 46.2 | Plus |
Rab8-PC | 207 | CG8287-PC | 5..181 | 18..192 | 441 | 48 | Plus |
Rab8-PA | 207 | CG8287-PA | 5..181 | 18..192 | 441 | 48 | Plus |