Clone BO13206 Report

Search the DGRC for BO13206

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG16786-RA
Protein status:BO13206.pep: Imported from assembly
Sequenced Size:2371

Clone Sequence Records

BO13206.3prime Sequence

840 bp (750 high quality bases) assembled on 2006-05-08

> BO13206.3prime
ATGGTCTAGAAAGCTTGCGCCAACATAGGCGAATGGATTGTAAGGAGGCG
GAAAGTAGTTGGGGAAGGATTGGCCTGGCTGGCCGGGAATGGTGGCGGTT
ATTAATCTAGTGACAGCTGTGGGAACGACAGAGGTTGAGAAGATGGTGGT
GTAGGCGGTCCTCGCGCCAAAGGTCAGCTTTAGAACCTTGGAGCTCGTTT
CCGTTACCATGGACTGCTGGACCTCGGTGGATGTGATGAACTGTTGCGGG
GCAATGGGCAAGAGTGGGTTGAAGGGATTGAATGGGTTGATCGAGAAGGG
ATACTGCGAGGATGGCGTTGGCATGGAAATCGTGGCGACATCAGTGACGT
ATTCCGTCTTCTCCACCACACCCACGGACTTGGAGAGGGTTCTCATGATG
GTCTCGGTGCCTCTGACAAGCGGCACCACATGGGACTCCCAGATGGTCTC
GAGCTTGATCACGGGTCGCGTGGAAGTTATCAAGCTGTTTTGCAGCGTTT
CCGGGAAGCTAATCGATTCCGGGAGCAGAGGGTTTATCGGGCTAGTTACA
TTACTCTTGGCCTCAACTTTGAGTTTTGGTTTAATCTTTGCGTCGAATTT
GCCCGTATTATCTTCATCTCCGAACTCGAGGTCCAGGTTGATTTCCGACC
CAGCCTCGTCCAAACTTCCTTCGAAGTCCTTGAAGTTCTTTGAGGGATTG
AAGTCGTCGCTCAAGGGGGAAATGGTCTGTGTTACAGTGATGAGACTGGT
GTAATCGTACGTCTGAACTAGGGTAACTTGGATGGTCTCGTTCCTTTTTG
CGTACACAACTGGGAGGATCTGGGTCTTCAGCTTGGTGTG

BO13206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-PB 2340 CG16786-RB 1516..2337 840..19 4110 100 Minus
CG16786-PA 2340 CG16786-RA 1516..2337 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-RC 2931 CG16786-RC 1822..2643 840..19 4110 100 Minus
CG16786-RA 2800 CG16786-RA 1822..2643 840..19 4110 100 Minus
CG16786-RB 2815 CG16786-RB 1837..2658 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24085178..24085999 840..19 4110 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:43:25 has no hits.

BO13206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:50 Download gff for BO13206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-PB 1516..2340 18..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:32 Download gff for BO13206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-PA 1516..2340 18..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:33 Download gff for BO13206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 1837..2664 10..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:04 Download gff for BO13206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 1837..2664 10..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:04 Download gff for BO13206.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24085178..24086005 10..840 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:33 Download gff for BO13206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19972701..19973528 10..840 99   Minus

BO13206.5prime Sequence

820 bp (775 high quality bases) assembled on 2006-05-08

> BO13206.5prime
GAAGTTATCACTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCG
GAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGC
TTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACC
CCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAA
TAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAAT
GTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCC
CGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACT
CGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGC
CAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTC
CAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCG
TACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACG
GCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGT
CTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAAC
CAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATC
CAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCG
CGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAA
AGCGGAGGACAAACACACCC

BO13206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-PB 2340 CG16786-RB 1..793 17..809 3965 100 Plus
CG16786-PA 2340 CG16786-RA 1..793 17..809 3965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-RC 2931 CG16786-RC 307..1111 17..820 4000 99.9 Plus
CG16786-RA 2800 CG16786-RA 307..1111 17..820 4000 99.9 Plus
CG16786-RB 2815 CG16786-RB 322..1126 17..820 4000 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24083651..24084286 170..805 3180 100 Plus
2R 25286936 2R 24083470..24083584 56..170 575 100 Plus
2R 25286936 2R 24083030..24083069 17..56 200 100 Plus
Blast to na_te.dros performed 2015-02-04 03:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6046..6118 167..237 116 67.6 Plus

BO13206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:51 Download gff for BO13206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-PB 1..805 17..820 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:33 Download gff for BO13206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-PA 1..805 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:53 Download gff for BO13206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 322..1126 17..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:16 Download gff for BO13206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 322..1126 17..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:16 Download gff for BO13206.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24083030..24083069 17..56 100 -> Plus
2R 24083471..24083584 57..170 100 -> Plus
2R 24083652..24084285 171..804 100 -> Plus
2R 24084339..24084355 805..820 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:53 Download gff for BO13206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19970553..19970592 17..56 100 -> Plus
arm_2R 19970994..19971107 57..170 100 -> Plus
arm_2R 19971175..19971808 171..804 100 -> Plus
arm_2R 19971862..19971878 805..820 94   Plus

BO13206.complete Sequence

2371 bp assembled on 2008-08-14

GenBank Submission: FJ632715

> BO13206.complete
GAAGTTATCACTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCG
GAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGC
TTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACC
CCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAA
TAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAAT
GTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCC
CGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACT
CGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGC
CAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTC
CAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCG
TACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACG
GCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGT
CTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAAC
CAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATC
CAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCG
CGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAA
AGCGGAGGAACAAACACACCCAGAGTTCCAAGCCGACAGTAGCTCCATCA
GCAACTGAAACTACCTCCCGCCACTCGTATCGGTCGAAAGCAAATGCGAA
TGCTGTGCAGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATGCATTCAAGC
TCAACAGGCGTCCTGGCAGATGGCAGTACAAGTCCTCGCCGAAGCCCAAG
GTGAACATAAGGAAGAACGCAAACCCCAATCTGCCCACCACCGTTCAAAA
CGACACGGCTCCCAGTGATGAGATCCCCGTGGACATCATCACCAACCAGG
CCATAAACAACGGCAGGGATCTTGAGGCGTCCGGATCACAGAACGGCCCA
GTTGCGAACAACAATAACGACGATCCCAACTCCAAATACTTTGTGCAGAC
GTTGAACGTTGAGATATCGACACCGCAACCATTCATAGACACCTATTACG
AAATTGCGACCATTAAGACTCCGTTTATATTCCAGGCTGGCGTGGTTAAG
AAAACGCGCTTCCTGACCGTCACCTCAACCATTGAGAAGGTGATCCAGGA
GGAGCACACCAAGGAGTACTCCGAAGACGATGGCCCGCTGACGGAGAACA
TTTTGGAGGCCACCGCCAGCACCGATGATAAGACCTTAACAGGCAGCGTT
ACGACCTTGAAGCCCATCTATCTGGGCGAGGAGACCGAGACCCCCAGCCT
GGAGACCATAACGGAGTCCTTTTCCATAACGCACACCAAGCTGAAGACCC
AGATCCTCCCAGTTGTGTACGCAAAAAGGAACGAGACCATCCAAGTTACC
CTAGTTCAGACGTACGATTACACCAGTCTCATCACTGTAACACAGACCAT
TTCCCCCTTGAGCGACGACTTCAATCCCTCAAAGAACTTCAAGGACTTCG
AAGGAAGTTTGGACGAGGCTGGGTCGGAAATCAACCTGGACCTCGAGTTC
GGAGATGAAGATAATACGGGCAAATTCGACGCAAAGATTAAACCAAAACT
CAAAGTTGAGGCCAAGAGTAATGTAACTAGCCCGATAAACCCTCTGCTCC
CGGAATCGATTAGCTTCCCGGAAACGCTGCAAAACAGCTTGATAACTTCC
ACGCGACCCGTGATCAAGCTCGAGACCATCTGGGAGTCCCATGTGGTGCC
GCTTGTCAGAGGCACCGAGACCATCATGAGAACCCTCTCCAAGTCCGTGG
GTGTGGTGGAGAAGACGGAATACGTCACTGATGTCGCCACGATTTCCATG
CCAACGCCATCCTCGCAGTATCCCTTCTCGATCAACCCATTCAATCCCTT
CAACCCACTCTTGCCCATTGCCCCGCAACAGTTCATCACATCCACCGAGG
TCCAGCAGTCCATGGTAACGGAAACGAGCTCCAAGGTTCTAAAGCTGACC
TTTGGCGCGAGGACCGCCTACACCACCATCTTCTCAACCTCTGTCGTTCC
CACAGCTGTCACTAGATTAATAACCGCCACCATTCCCGGCCAGCCAGGCC
AATCCTTCCCCAACTACTTTCCGCCTCCTTACAATCCATTCGCCTATGTT
GGCGCAAGCTTTCTAGACCAT

BO13206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-RC 2340 CG16786-PC 1..2337 17..2353 11685 100 Plus
CG16786-RA 2340 CG16786-PA 1..2337 17..2353 11685 100 Plus
CG16786-RB 2340 CG16786-PB 1..2337 17..2353 11685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-RC 2931 CG16786-RC 307..2643 17..2353 11685 100 Plus
CG16786-RA 2800 CG16786-RA 307..2643 17..2353 11685 100 Plus
CG16786-RB 2815 CG16786-RB 322..2658 17..2353 11685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24084929..24085999 1283..2353 5355 100 Plus
2R 25286936 2R 24083651..24084286 170..805 3180 100 Plus
2R 25286936 2R 24084338..24084820 804..1286 2415 100 Plus
2R 25286936 2R 24083470..24083584 56..170 575 100 Plus
2R 25286936 2R 24083030..24083069 17..56 200 100 Plus
Blast to na_te.dros performed 2014-11-28 00:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6046..6118 167..237 116 67.6 Plus

BO13206.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:14 Download gff for BO13206.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 357..2699 17..2362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:34 Download gff for BO13206.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 322..2658 17..2355 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:28 Download gff for BO13206.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 357..2693 17..2355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:55 Download gff for BO13206.complete
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 322..2658 17..2355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:55 Download gff for BO13206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24083030..24083069 17..56 100 -> Plus
2R 24083471..24083584 57..170 100 -> Plus
2R 24083652..24084285 171..804 100 -> Plus
2R 24084339..24084819 805..1285 100 -> Plus
2R 24084932..24085999 1286..2355 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:34 Download gff for BO13206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19970994..19971107 57..170 100 -> Plus
arm_2R 19970553..19970592 17..56 100 -> Plus
arm_2R 19971175..19971808 171..804 100 -> Plus
arm_2R 19971862..19972342 805..1285 100 -> Plus
arm_2R 19972455..19973522 1286..2355 99   Plus

BO13206.pep Sequence

Translation from 16 to 2371

> BO13206.pep
MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA
FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS
QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD
RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK
KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS
SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE
PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS
DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI
STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE
YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE
SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD
DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK
SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT
ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP
IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR
LITATIPGQPGQSFPNYFPPPYNPFAYVGASFLDH

BO13206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-PC 779 CG16786-PC 1..779 1..779 3979 100 Plus
CG16786-PA 779 CG16786-PA 1..779 1..779 3979 100 Plus
CG16786-PB 779 CG16786-PB 1..779 1..779 3979 100 Plus
CG17211-PA 1354 CG17211-PA 645..1086 178..582 169 23.3 Plus