Clone Sequence Records
BO13206.3prime Sequence
840 bp (750 high quality bases) assembled on 2006-05-08
> BO13206.3prime
ATGGTCTAGAAAGCTTGCGCCAACATAGGCGAATGGATTGTAAGGAGGCG
GAAAGTAGTTGGGGAAGGATTGGCCTGGCTGGCCGGGAATGGTGGCGGTT
ATTAATCTAGTGACAGCTGTGGGAACGACAGAGGTTGAGAAGATGGTGGT
GTAGGCGGTCCTCGCGCCAAAGGTCAGCTTTAGAACCTTGGAGCTCGTTT
CCGTTACCATGGACTGCTGGACCTCGGTGGATGTGATGAACTGTTGCGGG
GCAATGGGCAAGAGTGGGTTGAAGGGATTGAATGGGTTGATCGAGAAGGG
ATACTGCGAGGATGGCGTTGGCATGGAAATCGTGGCGACATCAGTGACGT
ATTCCGTCTTCTCCACCACACCCACGGACTTGGAGAGGGTTCTCATGATG
GTCTCGGTGCCTCTGACAAGCGGCACCACATGGGACTCCCAGATGGTCTC
GAGCTTGATCACGGGTCGCGTGGAAGTTATCAAGCTGTTTTGCAGCGTTT
CCGGGAAGCTAATCGATTCCGGGAGCAGAGGGTTTATCGGGCTAGTTACA
TTACTCTTGGCCTCAACTTTGAGTTTTGGTTTAATCTTTGCGTCGAATTT
GCCCGTATTATCTTCATCTCCGAACTCGAGGTCCAGGTTGATTTCCGACC
CAGCCTCGTCCAAACTTCCTTCGAAGTCCTTGAAGTTCTTTGAGGGATTG
AAGTCGTCGCTCAAGGGGGAAATGGTCTGTGTTACAGTGATGAGACTGGT
GTAATCGTACGTCTGAACTAGGGTAACTTGGATGGTCTCGTTCCTTTTTG
CGTACACAACTGGGAGGATCTGGGTCTTCAGCTTGGTGTG
BO13206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-PB | 2340 | CG16786-RB | 1516..2337 | 840..19 | 4110 | 100 | Minus |
CG16786-PA | 2340 | CG16786-RA | 1516..2337 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-RC | 2931 | CG16786-RC | 1822..2643 | 840..19 | 4110 | 100 | Minus |
CG16786-RA | 2800 | CG16786-RA | 1822..2643 | 840..19 | 4110 | 100 | Minus |
CG16786-RB | 2815 | CG16786-RB | 1837..2658 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24085178..24085999 | 840..19 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:43:25 has no hits.
BO13206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:50 Download gff for
BO13206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-PB | 1516..2340 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:32 Download gff for
BO13206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-PA | 1516..2340 | 18..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:33 Download gff for
BO13206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 1837..2664 | 10..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:04 Download gff for
BO13206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 1837..2664 | 10..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:04 Download gff for
BO13206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24085178..24086005 | 10..840 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:33 Download gff for
BO13206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19972701..19973528 | 10..840 | 99 | | Minus |
BO13206.5prime Sequence
820 bp (775 high quality bases) assembled on 2006-05-08
> BO13206.5prime
GAAGTTATCACTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCG
GAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGC
TTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACC
CCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAA
TAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAAT
GTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCC
CGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACT
CGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGC
CAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTC
CAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCG
TACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACG
GCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGT
CTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAAC
CAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATC
CAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCG
CGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAA
AGCGGAGGACAAACACACCC
BO13206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-PB | 2340 | CG16786-RB | 1..793 | 17..809 | 3965 | 100 | Plus |
CG16786-PA | 2340 | CG16786-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-RC | 2931 | CG16786-RC | 307..1111 | 17..820 | 4000 | 99.9 | Plus |
CG16786-RA | 2800 | CG16786-RA | 307..1111 | 17..820 | 4000 | 99.9 | Plus |
CG16786-RB | 2815 | CG16786-RB | 322..1126 | 17..820 | 4000 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24083651..24084286 | 170..805 | 3180 | 100 | Plus |
2R | 25286936 | 2R | 24083470..24083584 | 56..170 | 575 | 100 | Plus |
2R | 25286936 | 2R | 24083030..24083069 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 03:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6046..6118 | 167..237 | 116 | 67.6 | Plus |
BO13206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:51 Download gff for
BO13206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-PB | 1..805 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:33 Download gff for
BO13206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-PA | 1..805 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:53 Download gff for
BO13206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 322..1126 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:16 Download gff for
BO13206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 322..1126 | 17..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:16 Download gff for
BO13206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24083030..24083069 | 17..56 | 100 | -> | Plus |
2R | 24083471..24083584 | 57..170 | 100 | -> | Plus |
2R | 24083652..24084285 | 171..804 | 100 | -> | Plus |
2R | 24084339..24084355 | 805..820 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:53 Download gff for
BO13206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19970553..19970592 | 17..56 | 100 | -> | Plus |
arm_2R | 19970994..19971107 | 57..170 | 100 | -> | Plus |
arm_2R | 19971175..19971808 | 171..804 | 100 | -> | Plus |
arm_2R | 19971862..19971878 | 805..820 | 94 | | Plus |
BO13206.complete Sequence
2371 bp assembled on 2008-08-14
GenBank Submission: FJ632715
> BO13206.complete
GAAGTTATCACTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCG
GAAGCGCTACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGC
TTCCTGGACTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACC
CCAAAGTTCTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAA
TAAATATTATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAAT
GTCGGCATCAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCC
CGAAACCGAGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACT
CGCCCATCCAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGC
CAGCCCGAGCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTC
CAAGAGCGAGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCG
TACATGGCTACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACG
GCAACCAAGGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGT
CTCCAGTGTGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAAC
CAGTTACGCCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATC
CAGACCCAACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCG
CGACAACCGAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAA
AGCGGAGGAACAAACACACCCAGAGTTCCAAGCCGACAGTAGCTCCATCA
GCAACTGAAACTACCTCCCGCCACTCGTATCGGTCGAAAGCAAATGCGAA
TGCTGTGCAGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATGCATTCAAGC
TCAACAGGCGTCCTGGCAGATGGCAGTACAAGTCCTCGCCGAAGCCCAAG
GTGAACATAAGGAAGAACGCAAACCCCAATCTGCCCACCACCGTTCAAAA
CGACACGGCTCCCAGTGATGAGATCCCCGTGGACATCATCACCAACCAGG
CCATAAACAACGGCAGGGATCTTGAGGCGTCCGGATCACAGAACGGCCCA
GTTGCGAACAACAATAACGACGATCCCAACTCCAAATACTTTGTGCAGAC
GTTGAACGTTGAGATATCGACACCGCAACCATTCATAGACACCTATTACG
AAATTGCGACCATTAAGACTCCGTTTATATTCCAGGCTGGCGTGGTTAAG
AAAACGCGCTTCCTGACCGTCACCTCAACCATTGAGAAGGTGATCCAGGA
GGAGCACACCAAGGAGTACTCCGAAGACGATGGCCCGCTGACGGAGAACA
TTTTGGAGGCCACCGCCAGCACCGATGATAAGACCTTAACAGGCAGCGTT
ACGACCTTGAAGCCCATCTATCTGGGCGAGGAGACCGAGACCCCCAGCCT
GGAGACCATAACGGAGTCCTTTTCCATAACGCACACCAAGCTGAAGACCC
AGATCCTCCCAGTTGTGTACGCAAAAAGGAACGAGACCATCCAAGTTACC
CTAGTTCAGACGTACGATTACACCAGTCTCATCACTGTAACACAGACCAT
TTCCCCCTTGAGCGACGACTTCAATCCCTCAAAGAACTTCAAGGACTTCG
AAGGAAGTTTGGACGAGGCTGGGTCGGAAATCAACCTGGACCTCGAGTTC
GGAGATGAAGATAATACGGGCAAATTCGACGCAAAGATTAAACCAAAACT
CAAAGTTGAGGCCAAGAGTAATGTAACTAGCCCGATAAACCCTCTGCTCC
CGGAATCGATTAGCTTCCCGGAAACGCTGCAAAACAGCTTGATAACTTCC
ACGCGACCCGTGATCAAGCTCGAGACCATCTGGGAGTCCCATGTGGTGCC
GCTTGTCAGAGGCACCGAGACCATCATGAGAACCCTCTCCAAGTCCGTGG
GTGTGGTGGAGAAGACGGAATACGTCACTGATGTCGCCACGATTTCCATG
CCAACGCCATCCTCGCAGTATCCCTTCTCGATCAACCCATTCAATCCCTT
CAACCCACTCTTGCCCATTGCCCCGCAACAGTTCATCACATCCACCGAGG
TCCAGCAGTCCATGGTAACGGAAACGAGCTCCAAGGTTCTAAAGCTGACC
TTTGGCGCGAGGACCGCCTACACCACCATCTTCTCAACCTCTGTCGTTCC
CACAGCTGTCACTAGATTAATAACCGCCACCATTCCCGGCCAGCCAGGCC
AATCCTTCCCCAACTACTTTCCGCCTCCTTACAATCCATTCGCCTATGTT
GGCGCAAGCTTTCTAGACCAT
BO13206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-RC | 2340 | CG16786-PC | 1..2337 | 17..2353 | 11685 | 100 | Plus |
CG16786-RA | 2340 | CG16786-PA | 1..2337 | 17..2353 | 11685 | 100 | Plus |
CG16786-RB | 2340 | CG16786-PB | 1..2337 | 17..2353 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-RC | 2931 | CG16786-RC | 307..2643 | 17..2353 | 11685 | 100 | Plus |
CG16786-RA | 2800 | CG16786-RA | 307..2643 | 17..2353 | 11685 | 100 | Plus |
CG16786-RB | 2815 | CG16786-RB | 322..2658 | 17..2353 | 11685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24084929..24085999 | 1283..2353 | 5355 | 100 | Plus |
2R | 25286936 | 2R | 24083651..24084286 | 170..805 | 3180 | 100 | Plus |
2R | 25286936 | 2R | 24084338..24084820 | 804..1286 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 24083470..24083584 | 56..170 | 575 | 100 | Plus |
2R | 25286936 | 2R | 24083030..24083069 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6046..6118 | 167..237 | 116 | 67.6 | Plus |
BO13206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:14 Download gff for
BO13206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RA | 357..2699 | 17..2362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:34 Download gff for
BO13206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 322..2658 | 17..2355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:28 Download gff for
BO13206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RA | 357..2693 | 17..2355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:55 Download gff for
BO13206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 322..2658 | 17..2355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:55 Download gff for
BO13206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24083030..24083069 | 17..56 | 100 | -> | Plus |
2R | 24083471..24083584 | 57..170 | 100 | -> | Plus |
2R | 24083652..24084285 | 171..804 | 100 | -> | Plus |
2R | 24084339..24084819 | 805..1285 | 100 | -> | Plus |
2R | 24084932..24085999 | 1286..2355 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:34 Download gff for
BO13206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19970994..19971107 | 57..170 | 100 | -> | Plus |
arm_2R | 19970553..19970592 | 17..56 | 100 | -> | Plus |
arm_2R | 19971175..19971808 | 171..804 | 100 | -> | Plus |
arm_2R | 19971862..19972342 | 805..1285 | 100 | -> | Plus |
arm_2R | 19972455..19973522 | 1286..2355 | 99 | | Plus |
BO13206.pep Sequence
Translation from 16 to 2371
> BO13206.pep
MLRYLLILCALGSATCGDVELLTQTVYGFLDFTTTIGNTVMVFSPQSSPA
FELKSNDTHEIINIIETKPKVTKKEKENVGIKPTPLIVTHSNEIPETETS
QIESYNISLSNSPIQTLLNTPEYDLLSRQPEQFAEETYRLVNFKSKSEAD
RQRIYPSKKEPVHGYQATRSTEFRSIVTATKDSGKFSKVSQVHAVSSVEK
KSKPRQSRTNKPVTPSIQPSRTLKESSIQTQLASKPPRKSHQSGRDNRGS
SGTRKPSRPKGKRRNKHTQSSKPTVAPSATETTSRHSYRSKANANAVQEE
PVSVVSPNAFKLNRRPGRWQYKSSPKPKVNIRKNANPNLPTTVQNDTAPS
DEIPVDIITNQAINNGRDLEASGSQNGPVANNNNDDPNSKYFVQTLNVEI
STPQPFIDTYYEIATIKTPFIFQAGVVKKTRFLTVTSTIEKVIQEEHTKE
YSEDDGPLTENILEATASTDDKTLTGSVTTLKPIYLGEETETPSLETITE
SFSITHTKLKTQILPVVYAKRNETIQVTLVQTYDYTSLITVTQTISPLSD
DFNPSKNFKDFEGSLDEAGSEINLDLEFGDEDNTGKFDAKIKPKLKVEAK
SNVTSPINPLLPESISFPETLQNSLITSTRPVIKLETIWESHVVPLVRGT
ETIMRTLSKSVGVVEKTEYVTDVATISMPTPSSQYPFSINPFNPFNPLLP
IAPQQFITSTEVQQSMVTETSSKVLKLTFGARTAYTTIFSTSVVPTAVTR
LITATIPGQPGQSFPNYFPPPYNPFAYVGASFLDH
BO13206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-PC | 779 | CG16786-PC | 1..779 | 1..779 | 3979 | 100 | Plus |
CG16786-PA | 779 | CG16786-PA | 1..779 | 1..779 | 3979 | 100 | Plus |
CG16786-PB | 779 | CG16786-PB | 1..779 | 1..779 | 3979 | 100 | Plus |
CG17211-PA | 1354 | CG17211-PA | 645..1086 | 178..582 | 169 | 23.3 | Plus |