Clone Sequence Records
BO13208.3prime Sequence
748 bp (675 high quality bases) assembled on 2006-05-08
> BO13208.3prime
ATGGTCTAGAAAGCTTGCAGGTTCGGGTAAGGTTTCCTTGACGATTCTCG
ACCGGTCCTCCTGGGAATCTCGCTTGTAGAGCCTCAAGTGCGCCGGAGCG
GGATACGCGAGTGTTTGGCGTGCGATGGGCGTGAATCCTTGCTGCGGCTG
GTGCTGTCTGATCAGGCGCAGTACCTCCCAGCTGGGAATGTACGAGTCGA
TCAATGATTTCGAGGAGCGTCCAGCAAACAAATCGGGCGTGGGATCCGGT
TGCGATGGCCGGAATGGCCTGATACGCTCCGAACCCGGTCTCCGAGTGGT
GAAGCTCACAAAGCTTGGGGGATACGGTATCGGAACCCGTGGCCCATTCG
CGTAGTGCCGCTGGGGGGGCTGAGCGGGAGCGTAGGCGAACTGTTTGGAC
TGCTGGACCAGCAGGGGCTGACCCGGCAGCTTGTGGCTGGTTGCTCGGTT
GCCCTGGGCGGTAAATCCGTAGATGAACGGCGCTCGGGCATGGGGTGGCG
GAAGGGGGCGTGGCACTGGAAGGGGCAGGGCATTACTGGTTACATATGGA
ATGGGGCGCAGCCCCAGTTCCAAGTCGTAGGGAACTATGGGATTGGCAAA
TGGAGTTGCAGAAGAGGCCACTTTCGTCGTCGCTGCCGAGGGCGTGGGAG
TGGGCGTGGCAGCTGTGGGACCAACATAAAGCACACCTGGCAGGTGGGCA
GGAAAGGCGTACCCCGAACTCAGCTGCTGATGCTGCTGCTGCAGCTGA
BO13208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-PA | 1029 | CG14626-RA | 297..1026 | 748..19 | 3600 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1413 | CG14626-RA | 604..1333 | 748..19 | 3620 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1187851..1188505 | 673..19 | 3275 | 100 | Minus |
| X | 23542271 | X | 1187052..1187126 | 748..674 | 345 | 97.3 | Minus |
Blast to na_te.dros performed 2015-02-01 04:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2373 | 747..723 | 107 | 92 | Minus |
BO13208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:54 Download gff for
BO13208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-PA | 298..1029 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:37 Download gff for
BO13208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-PA | 298..1029 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:15 Download gff for
BO13208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 605..1340 | 11..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:04 Download gff for
BO13208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 605..1340 | 11..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:04 Download gff for
BO13208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1187053..1187126 | 674..747 | 97 | -> | Minus |
| X | 1187851..1188512 | 11..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:15 Download gff for
BO13208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1081086..1081159 | 674..747 | 97 | -> | Minus |
| arm_X | 1081884..1082545 | 11..673 | 99 | | Minus |
BO13208.5prime Sequence
846 bp (712 high quality bases) assembled on 2006-05-08
> BO13208.5prime
GAAGTTGTCACTCGACATGGTGTTGCCCCAACTGATTCTTCTATTCGTCG
TTTTGATCAACGATGTCCACGGCATCCTGCCACCTTCTGGCTACGACGAC
GATACATCGCCACTGCCACTCCGCCTTGACGACTTGGAACGGGACCACCT
GCAGCAGTTGGACCTCAATCGGCCGCCACTTCTGCCCAATCACTACGAAT
GGCACCCGGATGTGGCCGCCAGTCTGCCGCCCAGCTACATTCAGGAGGCC
GCCCAACGGGATCGGGAGCGCGAGCGTGATCTCGAGCGTAATCGGCGACT
GGAGGAGCTGCGTCAGCTGCAGCAGCAGCATCAGCAGCTGAGTTCGGGCT
ACGCCTTTCCTGCCCACCTGCCAGGTGTGCTCTATGTTGGTCCCACAGCT
GCCACGCCCACTCCCACGCCCTCGGCAGCGACGACGAAAGTGGCCTCTTC
TGCAACTCCATTTGCCAATCCCATAGTTCCCTACGACTTGGAACTGGGGC
TGCGCCCCATTCCATATGTAACCAGTAATGCCCTGCCCCTTCCAGTGCCA
CGCCCCCTTCCGCCACCCCATGCCCGAGCGCCGTTCATCTACGGATTTAC
CGCCCAGGGCAACCGAGCAACCAGCCACAAGCTGCCGGGTCAGCCCCTGC
TGGTCCAGCAGTCCAAACAGTTCGCCTACGCTCCCGCTCAGCCCCCCCAG
CGGCACTACGCGAATGGGCCACGGGTTCCGATACCGTATCCCCCAAGCTT
TGTGAGCTTCACCACTCGGAGACCGGGTTCGGAGCGTATCAAGCCATTCC
GGCCATCGCAACCGGATCCCACGCCCGATTTGTTTGCTGGACGCTC
BO13208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-PA | 1029 | CG14626-RA | 1..830 | 17..846 | 4125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1413 | CG14626-RA | 307..1137 | 16..846 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1187851..1188309 | 388..846 | 2280 | 99.8 | Plus |
| X | 23542271 | X | 1186758..1187126 | 19..387 | 1845 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 285..337 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2384 | 303..340 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2373 | 291..338 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6817 | 254..340 | 111 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 254..338 | 110 | 58.8 | Plus |
BO13208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:55 Download gff for
BO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:38 Download gff for
BO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:09 Download gff for
BO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 307..1137 | 16..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:30 Download gff for
BO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 307..1137 | 16..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:30 Download gff for
BO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1186752..1187126 | 12..387 | 99 | -> | Plus |
| X | 1187851..1188309 | 388..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:09 Download gff for
BO13208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1080785..1081159 | 12..387 | 99 | -> | Plus |
| arm_X | 1081884..1082342 | 388..846 | 99 | | Plus |
BO13208.complete Sequence
1060 bp assembled on 2008-08-14
GenBank Submission: FJ632717
> BO13208.complete
GAAGTTATCAGTCGACATGGTGTTGCCCCAACTGATTCTTCTATTCGTCG
TTTTGATCAACGATGTCCACGGCATCCTGCCACCTTCTGGCTACGACGAC
GATACATCGCCACTGCCACTCCGCCTTGACGACTTGGAACGGGACCACCT
GCAGCAGTTGGACCTCAATCGGCCGCCACTTCTGCCCAATCACTACGAAT
GGCACCCGGATGTGGCCGCCAGTCTGCCGCCCAGCTACATTCAGGAGGCC
GCCCAACGGGATCGGGAGCGCGAGCGTGATCTCGAGCGTAATCGGCGACT
GGAGGAGCTGCGTCAGCTGCAGCAGCAGCATCAGCAGCTGAGTTCGGGCT
ACGCCTTTCCTGCCCACCTGCCAGGTGTGCTCTATGTTGGTCCCACAGCT
GCCACGCCCACTCCCACGCCCTCGGCAGCGACGACGAAAGTGGCCTCTTC
TGCAACTCCATTTGCCAATCCCATAGTTCCCTACGACTTGGAACTGGGGC
TGCGCCCCATTCCATATGTAACCAGTAATGCCCTGCCCCTTCCAGTGCCA
CGCCCCCTTCCGCCACCCCATGCCCGAGCGCCGTTCATCTACGGATTTAC
CGCCCAGGGCAACCGAGCAACCAGCCACAAGCTGCCGGGTCAGCCCCTGC
TGGTCCAGCAGTCCAAACAGTTCGCCTACGCTCCCGCTCAGCCCCCCCAG
CGGCACTACGCGAATGGGCCACGGGTTCCGATACCGTATCCCCCAAGCTT
TGTGAGCTTCACCACTCGGAGACCGGGTTCGGAGCGTATCAGGCCATTCC
GGCCATCGCAACCGGATCCCACGCCCGATTTGTTTGCTGGACGCTCCTCG
AAATCATTGATCGACTCGTACATTCCCAGCTGGGAGGTACTGCGCCTGAT
CAGACAGCACCAGCCGCAGCAAGGATTCACGCCCATCGCACGCCAAACAC
TCGCGTATCCCGCTCCGGCGCACTTGAGGCTCTACAAGCGAGATTCCCAG
GAGGACCGGTCGAGAATCGTCAAGGAAACCTTACCCGAACCTGCAAGCTT
TCTAGACCAT
BO13208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1029 | CG14626-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-RA | 1413 | CG14626-RA | 307..1333 | 16..1042 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1187851..1188505 | 388..1042 | 3275 | 100 | Plus |
| X | 23542271 | X | 1186758..1187126 | 19..387 | 1845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6865 | 285..337 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2384 | 303..340 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2373 | 291..338 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6817 | 254..340 | 111 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 254..338 | 110 | 58.8 | Plus |
BO13208.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:07 Download gff for
BO13208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 295..1336 | 8..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:41 Download gff for
BO13208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 308..1333 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:14 Download gff for
BO13208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 304..1329 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:05 Download gff for
BO13208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14626-RA | 308..1333 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:05 Download gff for
BO13208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1186757..1187126 | 17..387 | 99 | -> | Plus |
| X | 1187851..1188505 | 388..1044 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:41 Download gff for
BO13208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1080790..1081159 | 17..387 | 99 | -> | Plus |
| arm_X | 1081884..1082538 | 388..1044 | 99 | | Plus |
BO13208.pep Sequence
Translation from 16 to 1060
> BO13208.pep
MVLPQLILLFVVLINDVHGILPPSGYDDDTSPLPLRLDDLERDHLQQLDL
NRPPLLPNHYEWHPDVAASLPPSYIQEAAQRDRERERDLERNRRLEELRQ
LQQQHQQLSSGYAFPAHLPGVLYVGPTAATPTPTPSAATTKVASSATPFA
NPIVPYDLELGLRPIPYVTSNALPLPVPRPLPPPHARAPFIYGFTAQGNR
ATSHKLPGQPLLVQQSKQFAYAPAQPPQRHYANGPRVPIPYPPSFVSFTT
RRPGSERIRPFRPSQPDPTPDLFAGRSSKSLIDSYIPSWEVLRLIRQHQP
QQGFTPIARQTLAYPAPAHLRLYKRDSQEDRSRIVKETLPEPASFLDH
BO13208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14626-PA | 342 | CG14626-PA | 1..342 | 1..342 | 1818 | 100 | Plus |
