Clone Sequence Records
BO13209.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO13209.5prime
GAAGTTATCCCTCGACGTGAAAACGATAAAACACACAATCGGCTTCCTAC
TGCTGGCAGCTTACCTTCCTTGCATGTCCTGGGCAGCTCCTGCCCTGCAC
TTCAGTGACCCAGAGCCCGATGAACTGGAGGCCTATCCCACGTCGCCCAG
TCAGGTGTTGCCCATACAACCCGTGTTGATTTACCCCAAGCCACGTGAGA
ATCTCTACCAGGCGCGAACTTTAGCTGGACGAAATGACGACCAGGACATC
ATCTTTGTGAAGCTGCTGCAGGATAAGTCCCATGGCTATCGGCCCAAGCA
GCAACGTCTCGTCATGGAGGAGACGAAGTCCTCGCAGCGCAAAAATCTCG
GCCTAAAGGACATATTCTATGTGAAGGCGCTCACCAACGGACGATTTAGC
CATGAGCGACTGAAGGTTTACCGGGTGCCCGAGTTCTACGCCATCAGTGT
TTTTAGCAACGGTGATAAAGCAAGCTTTCTAGACC
BO13209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14356-PA | 456 | CG14356-RA | 2..453 | 18..469 | 2260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14356-RA | 740 | CG14356-RA | 202..653 | 18..469 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14130767..14131211 | 469..25 | 2225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:51:39 has no hits.
BO13209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:56 Download gff for
BO13209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-PA | 2..456 | 18..472 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:40 Download gff for
BO13209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-PA | 2..456 | 18..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:52 Download gff for
BO13209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 199..655 | 18..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:00 Download gff for
BO13209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 202..658 | 18..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:00 Download gff for
BO13209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14130762..14131215 | 20..475 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:52 Download gff for
BO13209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9956484..9956937 | 20..475 | 98 | | Minus |
BO13209.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632718
> BO13209.complete
GAAGTTATCAGTCGACATGAAAACGATAAAACACACAATCGGCTTCCTAC
TGCTGGCAGCTTACCTTCCTTGCATGTCCTGGGCAGCTCCTGCCCTGCAC
TTCAGTGACCCAGAGCCCGATGAACTGGAGGCCTATCCCACGTCGCCCAG
TCAGGTGTTGCCCATACAACCCGTGTTGATTTACCCCAAGCCACGTGAGA
ATCTCTACCAGGCGCGAACTTTAGCTGGACGAAATGACGACCAGGACATC
ATCTTTGTGAAGCTGCTGCAGGATAAGTCCCATGGCTATCGGCCCAAGCA
GCAACGTCTCGTCATGGAGGAGACGAAGTCCTCGCAGCGCAAAAATCTCG
GCCTAAAGGACATATTCTATGTGAAGGCGCTCACCAACGGACGATTTAGC
CATGAGCGACTGAAGGTTTACCGGGTGCCCGAGTTCTACGCCATCAGTGT
TTTTAGCAACGGTGATAAAGCAAGCTTTCTAGACCAT
BO13209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14356-RA | 456 | CG14356-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14356-RA | 740 | CG14356-RA | 201..653 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14130767..14131211 | 469..25 | 2225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:17:58 has no hits.
BO13209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:04 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:48 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 198..655 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:29 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 198..650 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:04 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 198..655 | 17..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:15 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14356-RA | 201..653 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:15 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14130764..14131217 | 17..471 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:29 Download gff for
BO13209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9956486..9956939 | 17..471 | 98 | | Minus |
BO13209.pep Sequence
Translation from 16 to 487
> BO13209.pep
MKTIKHTIGFLLLAAYLPCMSWAAPALHFSDPEPDELEAYPTSPSQVLPI
QPVLIYPKPRENLYQARTLAGRNDDQDIIFVKLLQDKSHGYRPKQQRLVM
EETKSSQRKNLGLKDIFYVKALTNGRFSHERLKVYRVPEFYAISVFSNGD
KASFLDH
BO13209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14356-PA | 151 | CG14356-PA | 1..151 | 1..151 | 790 | 100 | Plus |