Clone BO13209 Report

Search the DGRC for BO13209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG14356-RA
Protein status:BO13209.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO13209.5prime Sequence

485 bp (484 high quality bases) assembled on 2006-05-08

> BO13209.5prime
GAAGTTATCCCTCGACGTGAAAACGATAAAACACACAATCGGCTTCCTAC
TGCTGGCAGCTTACCTTCCTTGCATGTCCTGGGCAGCTCCTGCCCTGCAC
TTCAGTGACCCAGAGCCCGATGAACTGGAGGCCTATCCCACGTCGCCCAG
TCAGGTGTTGCCCATACAACCCGTGTTGATTTACCCCAAGCCACGTGAGA
ATCTCTACCAGGCGCGAACTTTAGCTGGACGAAATGACGACCAGGACATC
ATCTTTGTGAAGCTGCTGCAGGATAAGTCCCATGGCTATCGGCCCAAGCA
GCAACGTCTCGTCATGGAGGAGACGAAGTCCTCGCAGCGCAAAAATCTCG
GCCTAAAGGACATATTCTATGTGAAGGCGCTCACCAACGGACGATTTAGC
CATGAGCGACTGAAGGTTTACCGGGTGCCCGAGTTCTACGCCATCAGTGT
TTTTAGCAACGGTGATAAAGCAAGCTTTCTAGACC

BO13209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14356-PA 456 CG14356-RA 2..453 18..469 2260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14356-RA 740 CG14356-RA 202..653 18..469 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14130767..14131211 469..25 2225 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:51:39 has no hits.

BO13209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:56 Download gff for BO13209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14356-PA 2..456 18..472 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:40 Download gff for BO13209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14356-PA 2..456 18..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:52 Download gff for BO13209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 199..655 18..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:00 Download gff for BO13209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 202..658 18..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:00 Download gff for BO13209.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14130762..14131215 20..475 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:52 Download gff for BO13209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9956484..9956937 20..475 98   Minus

BO13209.complete Sequence

487 bp assembled on 2006-10-11

GenBank Submission: FJ632718

> BO13209.complete
GAAGTTATCAGTCGACATGAAAACGATAAAACACACAATCGGCTTCCTAC
TGCTGGCAGCTTACCTTCCTTGCATGTCCTGGGCAGCTCCTGCCCTGCAC
TTCAGTGACCCAGAGCCCGATGAACTGGAGGCCTATCCCACGTCGCCCAG
TCAGGTGTTGCCCATACAACCCGTGTTGATTTACCCCAAGCCACGTGAGA
ATCTCTACCAGGCGCGAACTTTAGCTGGACGAAATGACGACCAGGACATC
ATCTTTGTGAAGCTGCTGCAGGATAAGTCCCATGGCTATCGGCCCAAGCA
GCAACGTCTCGTCATGGAGGAGACGAAGTCCTCGCAGCGCAAAAATCTCG
GCCTAAAGGACATATTCTATGTGAAGGCGCTCACCAACGGACGATTTAGC
CATGAGCGACTGAAGGTTTACCGGGTGCCCGAGTTCTACGCCATCAGTGT
TTTTAGCAACGGTGATAAAGCAAGCTTTCTAGACCAT

BO13209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14356-RA 456 CG14356-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14356-RA 740 CG14356-RA 201..653 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14130767..14131211 469..25 2225 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:17:58 has no hits.

BO13209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:04 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:48 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 198..655 17..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:29 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 198..650 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:04 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 198..655 17..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:15 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14356-RA 201..653 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:15 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14130764..14131217 17..471 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:29 Download gff for BO13209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9956486..9956939 17..471 98   Minus

BO13209.pep Sequence

Translation from 16 to 487

> BO13209.pep
MKTIKHTIGFLLLAAYLPCMSWAAPALHFSDPEPDELEAYPTSPSQVLPI
QPVLIYPKPRENLYQARTLAGRNDDQDIIFVKLLQDKSHGYRPKQQRLVM
EETKSSQRKNLGLKDIFYVKALTNGRFSHERLKVYRVPEFYAISVFSNGD
KASFLDH

BO13209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14356-PA 151 CG14356-PA 1..151 1..151 790 100 Plus