Clone Sequence Records
BO13210.5prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-08
> BO13210.5prime
GAAGTTATCAGTCGACATGCAGCGACAGATTATTAACATTCTGGGACAGA
CGACGCGTCGCCTGGCTAGCGGCCAGCAAATTCGCATGCTGTCAGTTTCT
GCGCCGCGACAGGAGATCTTCAAAGTCCAGAGCGCCGAGGACTTTGACAA
GAAAGTAAAGAACAGCCAGCAGCCCGTGATTGTGGACTTCTTCGCAACCT
GGTGCAATCCCTGCAAGCTGCTAACCCCGCGCATCGAGAGTATTGTGGGC
GAACAGGCCGGTTCCATCAAGCTGGCCAAGGTGGACATAGATGAGCACAG
CGAACTGGCTCTGGACTACGATGTGGCCGCCGTGCCCGTGCTAGTGGTGC
TGCAGAACGGCAAGGAGGTGCAGCGCATGGTGGGACTCCAGGACGAGGAC
AAAATCCGGGCCTGGGTTGCCGCCGCCGTCAAACAGGCCAAGGCAAGCTT
TCTAGACC
BO13210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8993-PA | 429 | CG8993-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8993-RA | 616 | CG8993-RA | 83..509 | 16..442 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2372526..2372769 | 199..442 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 2372281..2372463 | 16..198 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:22:44 has no hits.
BO13210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:57 Download gff for
BO13210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:41 Download gff for
BO13210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:00 Download gff for
BO13210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 77..512 | 7..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:37 Download gff for
BO13210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 77..512 | 7..446 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:37 Download gff for
BO13210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2372275..2372463 | 7..198 | 97 | -> | Plus |
3L | 2372526..2372772 | 199..446 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:00 Download gff for
BO13210.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2372275..2372463 | 7..198 | 97 | -> | Plus |
arm_3L | 2372526..2372772 | 199..446 | 99 | | Plus |
BO13210.complete Sequence
460 bp assembled on 2006-10-11
GenBank Submission: FJ632719
> BO13210.complete
GAAGTTATCAGTCGACATGCAGCGACAGATTATTAACATTCTGGGACAGA
CGACGCGTCGCCTGGCTAGCGGCCAGCAAATTCGCATGCTGTCAGTTTCT
GCGCCGCGACAGGAGATCTTCAAAGTCCAGAGCGCCGAGGACTTTGACAA
GAAAGTAAAGAACAGCCAGCAGCCCGTGATTGTGGACTTCTTCGCAACCT
GGTGCAATCCCTGCAAGCTGCTAACCCCGCGCATCGAGAGTATTGTGGGC
GAACAGGCCGGTTCCATCAAGCTGGCCAAGGTGGACATAGATGAGCACAG
CGAACTGGCTCTGGACTACGATGTGGCCGCCGTGCCCGTGCTAGTGGTGC
TGCAGAACGGCAAGGAGGTGCAGCGCATGGTGGGACTCCAGGACGAGGAC
AAAATCCGGGCCTGGGTTGCCGCCGCCGTCAAACAGGCCAAGGCAAGCTT
TCTAGACCAT
BO13210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8993-RA | 429 | CG8993-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8993-RA | 616 | CG8993-RA | 83..509 | 16..442 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2372526..2372769 | 199..442 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 2372281..2372463 | 16..198 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:32:02 has no hits.
BO13210.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:19 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:04 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 77..512 | 7..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:36 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 84..509 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:19 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 77..512 | 7..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:12 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8993-RA | 84..509 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:12 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2372282..2372463 | 17..198 | 100 | -> | Plus |
3L | 2372526..2372769 | 199..444 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:36 Download gff for
BO13210.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2372282..2372463 | 17..198 | 100 | -> | Plus |
arm_3L | 2372526..2372769 | 199..444 | 99 | | Plus |
BO13210.pep Sequence
Translation from 16 to 460
> BO13210.pep
MQRQIINILGQTTRRLASGQQIRMLSVSAPRQEIFKVQSAEDFDKKVKNS
QQPVIVDFFATWCNPCKLLTPRIESIVGEQAGSIKLAKVDIDEHSELALD
YDVAAVPVLVVLQNGKEVQRMVGLQDEDKIRAWVAAAVKQAKASFLDH
BO13210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8993-PA | 142 | CG8993-PA | 1..142 | 1..142 | 708 | 100 | Plus |
CG8517-PA | 145 | CG8517-PA | 11..135 | 14..138 | 347 | 52 | Plus |
CG3719-PA | 160 | CG3719-PA | 34..149 | 17..134 | 208 | 36.4 | Plus |
Trx-2-PA | 106 | CG31884-PA | 2..104 | 34..132 | 197 | 35 | Plus |
Trx-2-PB | 106 | CG31884-PB | 2..104 | 34..132 | 197 | 35 | Plus |