Clone BO13210 Report

Search the DGRC for BO13210

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG8993-RA
Protein status:BO13210.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO13210.5prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-08

> BO13210.5prime
GAAGTTATCAGTCGACATGCAGCGACAGATTATTAACATTCTGGGACAGA
CGACGCGTCGCCTGGCTAGCGGCCAGCAAATTCGCATGCTGTCAGTTTCT
GCGCCGCGACAGGAGATCTTCAAAGTCCAGAGCGCCGAGGACTTTGACAA
GAAAGTAAAGAACAGCCAGCAGCCCGTGATTGTGGACTTCTTCGCAACCT
GGTGCAATCCCTGCAAGCTGCTAACCCCGCGCATCGAGAGTATTGTGGGC
GAACAGGCCGGTTCCATCAAGCTGGCCAAGGTGGACATAGATGAGCACAG
CGAACTGGCTCTGGACTACGATGTGGCCGCCGTGCCCGTGCTAGTGGTGC
TGCAGAACGGCAAGGAGGTGCAGCGCATGGTGGGACTCCAGGACGAGGAC
AAAATCCGGGCCTGGGTTGCCGCCGCCGTCAAACAGGCCAAGGCAAGCTT
TCTAGACC

BO13210.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8993-PA 429 CG8993-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8993-RA 616 CG8993-RA 83..509 16..442 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2372526..2372769 199..442 1220 100 Plus
3L 28110227 3L 2372281..2372463 16..198 915 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:22:44 has no hits.

BO13210.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:57 Download gff for BO13210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8993-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:41 Download gff for BO13210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8993-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:00 Download gff for BO13210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 77..512 7..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:37 Download gff for BO13210.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 77..512 7..446 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:37 Download gff for BO13210.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2372275..2372463 7..198 97 -> Plus
3L 2372526..2372772 199..446 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:00 Download gff for BO13210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2372275..2372463 7..198 97 -> Plus
arm_3L 2372526..2372772 199..446 99   Plus

BO13210.complete Sequence

460 bp assembled on 2006-10-11

GenBank Submission: FJ632719

> BO13210.complete
GAAGTTATCAGTCGACATGCAGCGACAGATTATTAACATTCTGGGACAGA
CGACGCGTCGCCTGGCTAGCGGCCAGCAAATTCGCATGCTGTCAGTTTCT
GCGCCGCGACAGGAGATCTTCAAAGTCCAGAGCGCCGAGGACTTTGACAA
GAAAGTAAAGAACAGCCAGCAGCCCGTGATTGTGGACTTCTTCGCAACCT
GGTGCAATCCCTGCAAGCTGCTAACCCCGCGCATCGAGAGTATTGTGGGC
GAACAGGCCGGTTCCATCAAGCTGGCCAAGGTGGACATAGATGAGCACAG
CGAACTGGCTCTGGACTACGATGTGGCCGCCGTGCCCGTGCTAGTGGTGC
TGCAGAACGGCAAGGAGGTGCAGCGCATGGTGGGACTCCAGGACGAGGAC
AAAATCCGGGCCTGGGTTGCCGCCGCCGTCAAACAGGCCAAGGCAAGCTT
TCTAGACCAT

BO13210.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8993-RA 429 CG8993-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8993-RA 616 CG8993-RA 83..509 16..442 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2372526..2372769 199..442 1220 100 Plus
3L 28110227 3L 2372281..2372463 16..198 915 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:32:02 has no hits.

BO13210.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:19 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:04 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 77..512 7..446 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:36 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 84..509 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:19 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 77..512 7..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:12 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
CG8993-RA 84..509 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:12 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2372282..2372463 17..198 100 -> Plus
3L 2372526..2372769 199..444 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:36 Download gff for BO13210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2372282..2372463 17..198 100 -> Plus
arm_3L 2372526..2372769 199..444 99   Plus

BO13210.pep Sequence

Translation from 16 to 460

> BO13210.pep
MQRQIINILGQTTRRLASGQQIRMLSVSAPRQEIFKVQSAEDFDKKVKNS
QQPVIVDFFATWCNPCKLLTPRIESIVGEQAGSIKLAKVDIDEHSELALD
YDVAAVPVLVVLQNGKEVQRMVGLQDEDKIRAWVAAAVKQAKASFLDH

BO13210.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8993-PA 142 CG8993-PA 1..142 1..142 708 100 Plus
CG8517-PA 145 CG8517-PA 11..135 14..138 347 52 Plus
CG3719-PA 160 CG3719-PA 34..149 17..134 208 36.4 Plus
Trx-2-PA 106 CG31884-PA 2..104 34..132 197 35 Plus
Trx-2-PB 106 CG31884-PB 2..104 34..132 197 35 Plus