Clone Sequence Records
BO13211.3prime Sequence
864 bp (748 high quality bases) assembled on 2006-05-08
> BO13211.3prime
ATGGTCTAGAAAGCTTGCCACGCTCGACACTCGCTCGTTGTTGTCCAGCA
GACCGCTGGCCACGCCCACGCCCACTCCGCCCCGCTGGCTGTCGTAGCTG
AGCACCAGGGTCGAGGGCTTCTCGTGCAGCAGCAAACGCTGCTGGTGCTC
CTGCTCCCTCAGACAGCTGGGTTGTCGGGCCAACAGAGCCGATCCCTTAC
GGATCAACTGCGGCGTGGCGCCGCTAGAGACGGAGCCACCGGGCGTCCCA
TTGCCGGGACCCACGTGCAGCAGGCCAACCTGCTCCTTAAAGGGAGCTGC
ACCCGGTCCGGCTGTGCCGTTGGAGGAGCTGCGGTAGTAGCTCTGCTGGC
GGAAGGCCCGCATCTGGCGGGAACTGCCACCTGTGCCGTCCACCTGCGTC
ACCGCCGTTAGCATGGATGGAGTGCGCTGCGAGTCGCCCCTGTTCAAGCT
GTAGGCGTTGTTGTTGCCGCCCCCGCCGCTCGACTTGCCCCCTTTGCCAG
GACACAGGTGGAAGGCACCGTAGATGAGTGGGTTGACCAGGCTGTTTGAC
ATGCCGAAGAAGAAGATGGCGTCCTGCAGATCGTCGCCCAGCCTTTTGTC
CGGATTGAGGAACATGAACATAATCATCATGACGTAGTAGGGCGTCCAGC
AGATGAGAAACGCTATGATGATCACCACGGATATGCGAAGCGACTTCATC
TTGGCCTTGTGTATCAGCCTCTGGCGATTCGTCTGTGTGGGCAATTTGGC
CGTTGAGTAGTTGGCCAACTTTGATCCCTGGAACATCTTTTCGCTGCTGG
AAATGGTGCGGAAGGTGGACATGTAGGTGCCAAACAGGATGCACAGCGGG
CGCAGGAAGGTGAA
BO13211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10698-PA | 1740 | GRHRII-RA | 892..1737 | 864..19 | 4180 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-RB | 3238 | CG10698-RB | 1427..2272 | 864..19 | 4200 | 99.8 | Minus |
| CrzR-RA | 3238 | CG10698-RA | 1427..2272 | 864..19 | 4200 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12340082..12340505 | 19..442 | 2120 | 100 | Plus |
| 3L | 28110227 | 3L | 12342158..12342363 | 592..797 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 12341133..12341286 | 439..592 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 12342427..12342494 | 797..864 | 310 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:28:04 has no hits.
BO13211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:58 Download gff for
BO13211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10698-PA | 894..1740 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:43 Download gff for
BO13211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10698-PA | 894..1740 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:55:06 Download gff for
BO13211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 1427..2279 | 13..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:50 Download gff for
BO13211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 1427..2279 | 13..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:50 Download gff for
BO13211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12340075..12340502 | 13..439 | 99 | <- | Plus |
| 3L | 12341134..12341285 | 440..591 | 100 | <- | Plus |
| 3L | 12342158..12342363 | 592..797 | 100 | <- | Plus |
| 3L | 12342428..12342494 | 798..864 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:55:06 Download gff for
BO13211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12335528..12335594 | 798..864 | 97 | | Plus |
| arm_3L | 12333175..12333602 | 13..439 | 99 | <- | Plus |
| arm_3L | 12334234..12334385 | 440..591 | 100 | <- | Plus |
| arm_3L | 12335258..12335463 | 592..797 | 100 | <- | Plus |
BO13211.5prime Sequence
825 bp (798 high quality bases) assembled on 2006-05-08
> BO13211.5prime
GAAGTTATCAGTCGACATGGAGGACGAGTGGGGCTCCTTTGATCGTCTGC
CCAGTGTTCCGAGTGCCTCGATGGATTTGGAGACGGAAAACGAGGTGGTC
AGCAATTGGTCCACACTGGCCAACTTCACGCGACTTGTGGCTGGTGCCGC
TCCTGAAATCGTCAACTATACGCTCAACATGATCGACGTGGGTGTGGGCA
TGGCCACGGATATATCCAATTTGAGCGTGAGCACCACGCCCCTGCCCGCC
TACGCAATCTCCAATAGCTCCTCACTGGCGCACACCAATAGTCGCCATGA
AGCACCACCGATGGCGGAACAGGTTCCGGAGCACGTGATGGATCACGCAC
CTCAACTATCCCGATCCGGGTTGCTGAAAGTGTATGTCCTGGCGGTAATG
GCACTGTTCTCTCTGCTGGGCAACCTGCTGACCATCTGGAATATCTACAA
AACCCGCATCTCAAGAAGAAACTCACGGCACACGTGGAGTGCTATCTACT
CACTGATGTTCCATCTGTCCATCGCCGATGTCCTGGTCACCTGGTTCTGC
ATTATCGGGGAGGCCGCGTGGTGCTACACCGTCCAGTGGCTGGCCAATGA
GCTCACCTGCAAGCTGGTGAAGCTCTTCCAGATGTTTAGCCTCTACCTGA
GCACCTATGTCCTGGTCCTCATCGGAGTGGACCGCTGGATAGCGGTCAAG
TATCCGATGAAGTCGCTCAACATGGCCAAGAGGTGTCATAGGCTACTTGG
CGGTACTTACATCCTGTCGCTGGTGCTCAGCTTGCCACAGTTCTTCATCT
TCCATGTAGCGCGTGGCCCATTCGT
BO13211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10698-PA | 1740 | GRHRII-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-RB | 3238 | CG10698-RB | 536..1344 | 17..825 | 4045 | 100 | Plus |
| CrzR-RA | 3238 | CG10698-RA | 536..1344 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12347194..12347967 | 790..17 | 3870 | 100 | Minus |
| 3L | 28110227 | 3L | 12342577..12342614 | 825..788 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:16:46 has no hits.
BO13211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:57:59 Download gff for
BO13211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10698-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:45 Download gff for
BO13211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10698-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:30 Download gff for
BO13211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 522..1344 | 2..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:40:24 Download gff for
BO13211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 522..1344 | 2..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:40:24 Download gff for
BO13211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12342577..12342611 | 791..825 | 100 | <- | Minus |
| 3L | 12347194..12347981 | 2..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:30 Download gff for
BO13211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12335677..12335711 | 791..825 | 100 | <- | Minus |
| arm_3L | 12340294..12341081 | 2..790 | 99 | | Minus |
BO13211.complete Sequence
1771 bp assembled on 2008-08-14
GenBank Submission: FJ632720
> BO13211.complete
GAAGTTATCAGTCGACATGGAGGACGAGTGGGGCTCCTTTGATCGTCTGC
CCAGTGTTCCGAGTGCCTCGATGGATTTGGAGACGGAAAACGAGGTGGTC
AGCAATTGGTCCACACTGGCCAACTTCACGCGACTTGTGGCTGGTGCCGC
TCCTGAAATCGTCAACTATACGCTCAACATGATCGACGTGGGTGTGGGCA
TGGCCACGGATATATCCAATTTGAGCGTGAGCACCACGCCCCTGCCCGCC
TACGCAATCTCCAATAGCTCCTCACTGGCGCACACCAATAGTCGCCATGA
AGCACCACCGATGGCGGAACAGGTTCCGGAGCACGTGATGGATCACGCAC
CTCAACTATCCCGATCCGGGTTGCTGAAAGTGTATGTCCTGGCGGTAATG
GCACTGTTCTCTCTGCTGGGCAACCTGCTGACCATCTGGAATATCTACAA
AACCCGCATCTCAAGAAGAAACTCACGGCACACGTGGAGTGCTATCTACT
CACTGATGTTCCATCTGTCCATCGCCGATGTCCTGGTCACCTGGTTCTGC
ATTATCGGGGAGGCCGCGTGGTGCTACACCGTCCAGTGGCTGGCCAATGA
GCTCACCTGCAAGCTGGTGAAGCTCTTCCAGATGTTTAGCCTCTACCTGA
GCACCTATGTCCTGGTCCTCATCGGAGTGGACCGCTGGATAGCGGTCAAG
TATCCGATGAAGTCGCTCAACATGGCCAAGAGGTGTCATAGGCTACTTGG
CGGTACTTACATCCTGTCGCTGGTGCTCAGCTTGCCACAGTTCTTCATCT
TCCATGTAGCGCGTGGCCCATTCGTGGAGGAGTTTTACCAGTGCGTCACC
CACGGATTCTACACGGCGGATTGGCAGGAGCAGATGTACGCCACCTTCAC
GCTGGTCTTCACCTTCCTGCTGCCGCTGTGCATCCTGTTTGGCACCTACA
TGTCCACCTTCCGCACCATTTCCAGCAGCGAAAAGATGTTCCAGGGATCA
AAGTTGGCCAACTACTCAACGGCCAAATTGCCCACACAGACGAATCGCCA
GAGGCTGATACACAAGGCCAAGATGAAGTCGCTTCGCATATCCGTGGTGA
TCATCATAGCGTTTCTCATCTGCTGGACGCCCTACTACGTCATGATGATT
ATGTTCATGTTCCTCAATCCGGACAAAAGGCTGGGCGACGATCTGCAGGA
CGCCATCTTCTTCTTCGGCATGTCAAACAGCCTGGTCAACCCACTCATCT
ACGGTGCCTTCCACCTGTGTCCTGGCAAAGGGGGCAAGTCGAGCGGCGGG
GGCGGCAACAACAACGCCTACAGCTTGAACAGGGGCGACTCGCAGCGCAC
TCCATCCATGCTAACGGCGGTGACGCAGGTGGACGGCACAGGTGGCAGTT
CCCGCCAGATGCGGGCCTTCCGCCAGCAGAGCTACTACCGCAGCTCCTCC
AACGGCACAGCCGGACCGGGTGCAGCTCCCTTTAAGGAGCAGGTTGGCCT
GCTGCACGTGGGTCCCGGCAATGGGACGCCCGGTGGCTCCGTCTCTAGCG
GCGCCACGCCGCAGTTGATCCGTAAGGGATCGGCTCTGTTGGCCCGACAA
CCCAGCTGTCTGAGGGAGCAGGAGCACCAGCAGCGTTTGCTGCTGCACGA
GAAGCCCTCGACCCTGGTGCTCAGCTACGACAGCCAGCGGGGCGGAGTGG
GCGTGGGCGTGGCCAGCGGTCTGCTGGACAACAACGAGCGAGTGTCGAGC
GTGGCAAGCTTTCTAGACCAT
BO13211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-RB | 1935 | CG10698-PB | 1..1737 | 17..1753 | 8685 | 100 | Plus |
| CrzR-RA | 1740 | CG10698-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-RB | 3238 | CG10698-RB | 536..2272 | 17..1753 | 8685 | 100 | Plus |
| CrzR-RA | 3238 | CG10698-RA | 536..2272 | 17..1753 | 8685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12347194..12347967 | 790..17 | 3870 | 100 | Minus |
| 3L | 28110227 | 3L | 12340082..12340505 | 1753..1330 | 2120 | 100 | Minus |
| 3L | 28110227 | 3L | 12342158..12342363 | 1180..975 | 1030 | 100 | Minus |
| 3L | 28110227 | 3L | 12342427..12342614 | 975..788 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 12341133..12341286 | 1333..1180 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:15:37 has no hits.
BO13211.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:24 Download gff for
BO13211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GRHRII-RA | 518..2275 | 2..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:03 Download gff for
BO13211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 536..2272 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:40 Download gff for
BO13211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GRHRII-RA | 532..2268 | 17..1755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:32 Download gff for
BO13211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 536..2272 | 17..1755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:32 Download gff for
BO13211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12342158..12342363 | 975..1180 | 100 | <- | Minus |
| 3L | 12342428..12342611 | 791..974 | 100 | <- | Minus |
| 3L | 12340079..12340502 | 1333..1755 | 99 | <- | Minus |
| 3L | 12341134..12341285 | 1181..1332 | 100 | <- | Minus |
| 3L | 12347194..12347967 | 17..790 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:03 Download gff for
BO13211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12334234..12334385 | 1181..1332 | 100 | <- | Minus |
| arm_3L | 12333179..12333602 | 1333..1755 | 99 | <- | Minus |
| arm_3L | 12335258..12335463 | 975..1180 | 100 | <- | Minus |
| arm_3L | 12335528..12335711 | 791..974 | 100 | <- | Minus |
| arm_3L | 12340294..12341067 | 17..790 | 100 | | Minus |
BO13211.pep Sequence
Translation from 16 to 1771
> BO13211.pep
MEDEWGSFDRLPSVPSASMDLETENEVVSNWSTLANFTRLVAGAAPEIVN
YTLNMIDVGVGMATDISNLSVSTTPLPAYAISNSSSLAHTNSRHEAPPMA
EQVPEHVMDHAPQLSRSGLLKVYVLAVMALFSLLGNLLTIWNIYKTRISR
RNSRHTWSAIYSLMFHLSIADVLVTWFCIIGEAAWCYTVQWLANELTCKL
VKLFQMFSLYLSTYVLVLIGVDRWIAVKYPMKSLNMAKRCHRLLGGTYIL
SLVLSLPQFFIFHVARGPFVEEFYQCVTHGFYTADWQEQMYATFTLVFTF
LLPLCILFGTYMSTFRTISSSEKMFQGSKLANYSTAKLPTQTNRQRLIHK
AKMKSLRISVVIIIAFLICWTPYYVMMIMFMFLNPDKRLGDDLQDAIFFF
GMSNSLVNPLIYGAFHLCPGKGGKSSGGGGNNNAYSLNRGDSQRTPSMLT
AVTQVDGTGGSSRQMRAFRQQSYYRSSSNGTAGPGAAPFKEQVGLLHVGP
GNGTPGGSVSSGATPQLIRKGSALLARQPSCLREQEHQQRLLLHEKPSTL
VLSYDSQRGGVGVGVASGLLDNNERVSSVASFLDH
BO13211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-PB | 644 | CG10698-PB | 1..579 | 1..579 | 3011 | 100 | Plus |
| CrzR-PA | 579 | CG10698-PA | 1..579 | 1..579 | 3011 | 100 | Plus |
| AkhR-PD | 443 | CG11325-PD | 40..398 | 120..513 | 432 | 28.6 | Plus |
| AkhR-PB | 443 | CG11325-PB | 40..398 | 120..513 | 432 | 28.6 | Plus |
| AkhR-PA | 443 | CG11325-PA | 40..398 | 120..513 | 432 | 28.6 | Plus |
